iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tae-125307

Ensembl Protein ID

TRIAE_CS42_2AL_TGACv1_094768_AA0302880.1

UniProt Accession

A0A1D5TCX5; A0A1D5TCX5_WHEAT

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIAE_CS42_2AL_TGACv1_094768_AA0302880	TRIAE_CS42_2AL_TGACv1_094768_AA0302880.1	TRIAE_CS42_2AL_TGACv1_094768_AA0302880.1
TRIAE_CS42_2AL_TGACv1_094768_AA0302880	TRIAE_CS42_2AL_TGACv1_094768_AA0302880.3	TRIAE_CS42_2AL_TGACv1_094768_AA0302880.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-36	124.4	143	181
UBD/Beta-Prp	9.80e-57	195.0	15	278

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D  +k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDSAVKIWDLTAGKLLH 181
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDr 74
            +h+s ++c+k+  + +++l+tg++d+++ +w + +++ ++sl gh+++v +v f++++ + + g+  +
   Q: 15   VAHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSISSLPGHTSAVESVAFDSTEVFVAAGAASG 83
           57999999****999********************************************9999****** PP
   S: 75   tikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncv 143
           t+k+wdl+  k+v+tl+gh ++ +s++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +
   Q: 84   TVKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAI 151
           ********************************************************.************ PP
   S: 144  vvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtg 212
           ++ pdg+ +vsG+ D++v++Wdl  gkll+++++ h++++++++f++  + l++gs d+tvk+wdl+t 
   Q: 152  RFTPDGRWVVSGGEDSAVKIWDLTAGKLLHEFKS-HEGQIQCIDFHPHEFLLATGSADKTVKFWDLETF 219
           *********************************9.********************************** PP
   S: 213  ecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
           e + +     + v+s+ f p++  l++g  ++s++++  +   +  t+    s+++   v
   Q: 220  ELIGSTGPEMTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDLNV 278
           *******************999999999.5888888766666666666666655555555 PP

Organism

Triticum aestivum

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSISSLPGH 60
TSAVESVAFD STEVFVAAGA ASGTVKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGGTGGGGA CCCAGCCCGA CGACAGCTCC ATTTCCCCCT CCCCTCCCTC CCTCCCTCCC 60
TCCCCACCAA ACTCGAATTC TCGCCACCGC ATTCCCCGCA CCCCCCGCAC ACCCACCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003305	Anas platyrhynchos	50.00	3.00e-100	360.00
IUUC-Ath-007606	Arabidopsis thaliana	60.80	3.00e-180	626.00
IUUC-Bdi-014652	Brachypodium distachyon	88.42	0.00e+00	1635.00
IUUC-Bol-016374	Brassica oleracea	59.96	7.00e-178	618.00
IUUC-Cin-025156	Ciona intestinalis	46.18	9.00e-87	315.00
IUUC-Csv-025962	Ciona savignyi	48.99	5.00e-87	314.00
IUUC-Dre-028215	Danio rerio	51.10	4.00e-103	369.00
IUUC-Fal-037387	Ficedula albicollis	52.15	5.00e-103	369.00
IUUC-Gmo-038692	Gadus morhua	52.33	1.00e-102	367.00
IUUC-Gga-040597	Gallus gallus	50.63	5.00e-103	369.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.97	2.00e-98	353.00
IUUC-Hvu-047649	Hordeum vulgare	96.65	0.00e+00	1819.00
IUUC-Lch-049674	Latimeria chalumnae	51.44	1.00e-105	378.00
IUUC-Lpe-051554	Leersia perrieri	79.60	0.00e+00	1495.00
IUUC-Mpo-057381	Magnaporthe poae	33.33	1.00e-26	115.00
IUUC-Mga-059608	Meleagris gallopavo	49.51	1.00e-99	358.00
IUUC-Mac-065100	Musa acuminata	49.57	0.00e+00	810.00
IUUC-Obr-076385	Oryza brachyantha	80.79	0.00e+00	1471.00
IUUC-Ogl-077427	Oryza glaberrima	80.59	0.00e+00	1483.00
IUUC-Ogu-078428	Oryza glumaepatula	68.09	0.00e+00	1070.00
IUUC-Oin-079811	Oryza indica	79.48	0.00e+00	1472.00
IUUC-Ome-081239	Oryza meridionalis	77.68	0.00e+00	1373.00
IUUC-Opu-083748	Oryza punctata	71.30	0.00e+00	1317.00
IUUC-Osa-085988	Oryza sativa	75.61	0.00e+00	1358.00
IUUC-Psi-093830	Pelodiscus sinensis	51.61	4.00e-99	356.00
IUUC-Pfo-096755	Poecilia formosa	51.32	1.00e-98	355.00
IUUC-Sit-110360	Setaria italica	82.18	0.00e+00	1487.00
IUUC-Tgu-117461	Taeniopygia guttata	52.15	1.00e-103	371.00
IUUC-Tru-117865	Takifugu rubripes	48.40	5.00e-92	332.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.50	4.00e-92	332.00
IUUC-Tur-126411	Triticum urartu	86.03	0.00e+00	1569.00
IUUC-Xtr-132915	Xenopus tropicalis	52.98	1.00e-100	361.00
IUUC-Xma-134133	Xiphophorus maculatus	50.66	3.00e-96	346.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence