iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099239

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000347

Gene Name

POPTRDRAFT_235193; POPTR_0011s06840g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0011s06840	POPTR_0011s06840.1	POPTR_0011s06840.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.90e-32	111.7	290	362

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpIsl+lMrdPv++++G+tydrs I +w+++g+ tcP+t+q l ++ lvPn +lr+li +wc ++++
   Q: 290  IPKDFCCPISLDLMRDPVIISTGQTYDRSLISRWMEEGHCTCPKTGQMLMNTRLVPNRALRNLIVQWCTAHGI 362
           8********************************************************************9986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MATAAIFSSL RRRRSPSLEA FLAPVDLTDV ALVQTLVSVS TELVSCFSGK SLFFQRKNSR 60
SLIRKIEVFV VLLEYLRDSG AGSALSPPTI VCFKELYLLL YRSKILLDCC VQSSKLWLLL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATATTCTCTT CTTTCTTTAA ATAAAAGAGG GACTAGTAGT TTTCTTCATG GCCACCGCTG 60
CTATATTTTC TTCTCTAAGG CGGCGAAGAT CGCCGTCTTT AGAAGCTTTC TTGGCGCCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0011s06840g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001129	Aegilops tauschii	49.82	5.00e-139	487.00
IUUC-Aly-006027	Arabidopsis lyrata	71.95	0.00e+00	930.00
IUUC-Ath-007054	Arabidopsis thaliana	71.25	0.00e+00	923.00
IUUC-Bdi-014675	Brachypodium distachyon	46.93	3.00e-145	508.00
IUUC-Bol-015901	Brassica oleracea	69.13	0.00e+00	837.00
IUUC-Bra-017296	Brassica rapa	68.41	0.00e+00	820.00
IUUC-Gma-043020	Glycine max	77.34	0.00e+00	1023.00
IUUC-Hvu-047822	Hordeum vulgare	46.97	5.00e-153	534.00
IUUC-Lch-050386	Latimeria chalumnae	38.81	2.00e-10	59.70
IUUC-Lpe-051105	Leersia perrieri	47.81	5.00e-144	504.00
IUUC-Mtr-057764	Medicago truncatula	78.84	0.00e+00	1006.00
IUUC-Mac-065609	Musa acuminata	51.57	8.00e-172	596.00
IUUC-Oba-075480	Oryza barthii	49.91	1.00e-137	482.00
IUUC-Ogl-077156	Oryza glaberrima	46.97	2.00e-148	519.00
IUUC-Ogu-078640	Oryza glumaepatula	46.97	5.00e-149	521.00
IUUC-Oin-079253	Oryza indica	45.10	7.00e-138	484.00
IUUC-Olo-080903	Oryza longistaminata	50.09	2.00e-137	482.00
IUUC-Ome-081982	Oryza meridionalis	46.97	1.00e-148	520.00
IUUC-Oni-082824	Oryza nivara	46.97	5.00e-149	521.00
IUUC-Opu-083758	Oryza punctata	46.80	3.00e-146	511.00
IUUC-Oru-084718	Oryza rufipogon	46.97	5.00e-149	521.00
IUUC-Osa-085662	Oryza sativa	48.32	1.00e-143	503.00
IUUC-Ppe-101890	Prunus persica	81.22	0.00e+00	994.00
IUUC-Sit-110022	Setaria italica	48.84	9.00e-152	530.00
IUUC-Sly-111463	Solanum lycopersicum	74.86	0.00e+00	959.00
IUUC-Stu-111976	Solanum tuberosum	74.59	0.00e+00	955.00
IUUC-Sbi-114100	Sorghum bicolor	48.68	2.00e-154	538.00
IUUC-Tca-121221	Theobroma cacao	82.75	0.00e+00	1079.00
IUUC-Tae-124437	Triticum aestivum	47.28	1.00e-153	536.00
IUUC-Tur-126627	Triticum urartu	50.87	8.00e-133	466.00
IUUC-Vvi-131159	Vitis vinifera	75.24	0.00e+00	938.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence