iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006873

UUCD1 version

UUC-ArT-00898

Ensembl Protein ID

AT5G43920.1

UniProt Accession

Q9FND4; Q9FND4_ARATH

Genbank Protein ID

ABQ85545.1; AED95028.1; BAB09052.1; BAE99272.1

Protein Name

Transducin family protein / WD-40 repeat family protein; WD-repeat protein-like; Will die slowly

Genbank Nucleotide ID

EF601122; CP002688; AB006703; AK227235

Gene Name

WDS; MRH10.1; MRH10_1; At5g43920

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G43920	AT5G43920.1	AT5G43920.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-33	114.6	483	514
UBD/Beta-Prp	1.90e-45	156.2	355	513

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWD 29
           gH+  v+c+++   + ++l+s+sdD ti++W 
   Q: 483  GHSMTVNCVSWnpKNpRMLASASDDQTIRIWG 514
           79999*******84459**************7 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlslsfsp 104
           +++  + +++++pd++ ++t + d+ i++ +++t  +++++ + e+++t++++s dgk+++   + + i++wdl    k+  +++gh +s + ++++ 
   Q: 355  TRIPKVVDLAVTPDGESMITVFSDKEIRILNLET--KVERVISEEQPITSLSISGDGKFFIVNLSCQEIHLWDLAgEWKQPLKFSGHRQSKYVIRSCF 450
           55556667899***********************..6789999999****************************97779999*****99988888777 PP
   S: 105  ...sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlW 164
              ++++++sGs+d+ + +w+l++ + le +lsgh+ +vncv+++p++ ++l+s+s+D+t+r+W
   Q: 451  gglDSSFIASGSEDSQVYIWNLKNTKPLE-VLSGHSMTVNCVSWNPKNpRMLASASDDQTIRIW 513
           77688************************.********************************** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MENGLWEVLG SKGLLKKHEF IRILVQCLYS LGFKNSASCL EFESKILYKT ADSEFLEKQV 60
LSGNWDSCVQ VLDRIFDNSM DDTRNTALYL VFKQCLLEYL KRGDVSLALN VLRKQAPLLR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAATTCT AATATATGAC TAACCGTATA ACCTTAACGA TAGGGATTAG CGATAGGACT 60
TAACGATATA AACACATATG TATATGGTTT TCGACCTCTC TTCTCCAAAA CCATCACAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00668--CTLH
SM00320--WD40

KEGG

ath:AT5G43920

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003020	Amborella trichopoda	54.60	1.00e-160	558.00
IUUC-Aly-005958	Arabidopsis lyrata	94.65	0.00e+00	980.00
IUUC-Afu-008972	Aspergillus fumigatus	38.33	4.00e-63	234.00
IUUC-Bdi-014476	Brachypodium distachyon	51.18	4.00e-139	487.00
IUUC-Bol-015916	Brassica oleracea	85.74	0.00e+00	887.00
IUUC-Bra-017911	Brassica rapa	84.87	0.00e+00	892.00
IUUC-Cho-024572	Choloepus hoffmanni	39.68	3.00e-57	215.00
IUUC-Cin-025474	Ciona intestinalis	42.66	5.00e-54	203.00
IUUC-Cne-026805	Cryptococcus neoformans	28.24	1.00e-32	134.00
IUUC-Eeu-034468	Erinaceus europaeus	51.22	1.00e-33	137.00
IUUC-Fca-036556	Felis catus	40.61	2.00e-75	275.00
IUUC-Gmo-039395	Gadus morhua	40.38	2.00e-77	282.00
IUUC-Gma-043704	Glycine max	65.90	0.00e+00	675.00
IUUC-Lch-049848	Latimeria chalumnae	38.17	5.00e-70	257.00
IUUC-Mtr-058724	Medicago truncatula	64.85	0.00e+00	702.00
IUUC-Obr-076019	Oryza brachyantha	49.71	2.00e-129	454.00
IUUC-Pma-094254	Petromyzon marinus	42.78	6.00e-81	293.00
IUUC-Pop-098968	Populus trichocarpa	74.19	9.00e-158	548.00
IUUC-Pca-100574	Procavia capensis	42.01	7.00e-44	171.00
IUUC-Ppe-101881	Prunus persica	68.16	0.00e+00	715.00
IUUC-Stu-112587	Solanum tuberosum	60.18	5.00e-154	536.00
IUUC-Sar-113539	Sorex araneus	44.57	6.00e-40	157.00
IUUC-Sre-115051	Sporisorium reilianum	26.12	3.00e-47	182.00
IUUC-Tsy-119284	Tarsius syrichta	36.85	3.00e-63	235.00
IUUC-Tvi-122376	Trichoderma virens	36.68	2.00e-53	201.00
IUUC-Tae-124685	Triticum aestivum	49.71	2.00e-137	482.00
IUUC-Tbe-128063	Tupaia belangeri	26.95	1.00e-23	103.00
IUUC-Ttr-129184	Tursiops truncatus	44.64	2.00e-75	275.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence