iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017807

Ensembl Protein ID

Bra039002.1-P

UniProt Accession

M4FD32; M4FD32_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra039002	Bra039002.1	Bra039002.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-17	64.1	190	228
UBD/Beta-Prp	1.60e-44	153.3	84	333

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+d  +cl    s+   +++Gs Dgt ++WD +tg+++k
   Q: 190  GHSDYLHCL-VsrSSaSQILTGSEDGTARIWDCKTGKCIK 228
           8*******8.55877789********************87 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf..spdksllatgsrdgtikvwdvttgkl.......lrslsgheae.....................vtavkfspdgkilvtgse 72
            +h+++ ++vkf   +++ ll++ ++dg+++ w++++  +       ++       +                     ++a++ +p++    t++ 
   Q: 84   RAHEGPAYDVKFygEDEDALLLSCGDDGRVRGWKWRD--FadstenlVK-------PlleltnpqhkgpwgalspmpeINAISVDPQSASVYTAAG 170
           57999*******9999999*****************9..3234455522.......1444444466678999999999****************** PP
   S: 73   DrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdgnllvsGslDrtvrlWd 165
           D  ++ wd+++gk+ +t+kgh+d++ +l +  s + +++Gs+d t+r+wd +tg+c++     +++ +  ++++++++ +    +++  + + +W+
   Q: 171  DSCAYCWDMESGKIKMTFKGHSDYLHCLVSRSSASQILTGSEDGTARIWDCKTGKCIKVigsQEKKSRFRISSIALDE-SESWLACGQGKNIAVWN 265
           ******************************9999***********************995544444444678888888.67778889999****** PP
   S: 166  lktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvs 239
           l+  +++ t ++     v+ + fd+  k+++s++    ++ +dl +g  + + ++  +   sv ++p    +++
   Q: 266  LPASECVSTISS--PAHVQDVMFDE--KQILSVGAEPLLRRFDL-NGALLSQIHCAPSSAFSVSLHPA-GVIAV 333
           **********87..9**********..78***************.88889999999888888888844.34444 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MYGDATNWNE DEYRESILKE REIQTRTVFR TAWAPNPNPD AFVVASSDGT LAFHSMSSLV 60
SQSAAFGYSK GEDFMVAAPE GVVRAHEGPA YDVKFYGEDE DALLLSCGDD GRVRGWKWRD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTACGGAG ACGCCACGAA TTGGAACGAG GATGAGTATA GAGAATCAAT CCTGAAGGAA 60
CGAGAGATTC AGACTCGTAC CGTCTTTCGA ACCGCCTGGG CTCCAAACCC CAATCCGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0000347--C:THO complex
GO:0009788--P:negative regulation of abscisic acid-activated signaling pathway
GO:0010267--P:production of ta-siRNAs involved in RNA interference
GO:0016567--P:protein ubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001101	Aegilops tauschii	50.14	2.00e-100	358.00
IUUC-Aml-001693	Ailuropoda melanoleuca	32.78	6.00e-28	117.00
IUUC-Atr-002699	Amborella trichopoda	51.98	6.00e-96	343.00
IUUC-Aca-004231	Anolis carolinensis	31.50	3.00e-33	135.00
IUUC-Aly-006385	Arabidopsis lyrata	86.92	0.00e+00	627.00
IUUC-Ath-006723	Arabidopsis thaliana	86.38	2.00e-180	624.00
IUUC-Ame-010813	Astyanax mexicanus	28.51	1.00e-21	96.30
IUUC-Bta-013458	Bos taurus	32.37	2.00e-27	116.00
IUUC-Bdi-014935	Brachypodium distachyon	50.96	2.00e-102	365.00
IUUC-Bol-015442	Brassica oleracea	96.93	0.00e+00	689.00
IUUC-Cja-019061	Callithrix jacchus	31.95	2.00e-27	115.00
IUUC-Cfa-021146	Canis familiaris	31.32	3.00e-28	118.00
IUUC-Cpo-022512	Cavia porcellus	32.37	3.00e-27	115.00
IUUC-Csa-023055	Chlorocebus sabaeus	32.78	2.00e-28	119.00
IUUC-Cho-024693	Choloepus hoffmanni	35.53	4.00e-21	94.00
IUUC-Cin-025181	Ciona intestinalis	29.32	7.00e-28	117.00
IUUC-Csv-025852	Ciona savignyi	28.46	5.00e-29	121.00
IUUC-Dre-028221	Danio rerio	28.32	1.00e-31	129.00
IUUC-Dno-029200	Dasypus novemcinctus	36.17	1.00e-18	85.90
IUUC-Dor-030863	Dipodomys ordii	31.49	4.00e-27	114.00
IUUC-Dme-032016	Drosophila melanogaster	23.64	5.00e-22	98.20
IUUC-Eca-034363	Equus caballus	32.78	3.00e-28	118.00
IUUC-Fca-036546	Felis catus	32.37	1.00e-27	116.00
IUUC-Gmo-038513	Gadus morhua	28.16	3.00e-27	115.00
IUUC-Gac-042606	Gasterosteus aculeatus	29.15	5.00e-32	130.00
IUUC-Gma-043171	Glycine max	63.78	2.00e-132	465.00
IUUC-Ggo-044877	Gorilla gorilla	32.78	3.00e-28	119.00
IUUC-Hsa-045813	Homo sapiens	32.78	3.00e-28	118.00
IUUC-Hvu-047782	Hordeum vulgare	58.99	2.00e-58	217.00
IUUC-Itr-047876	Ictidomys tridecemlineatus	32.03	7.00e-28	117.00
IUUC-Lch-049506	Latimeria chalumnae	31.18	7.00e-35	140.00
IUUC-Lpe-051203	Leersia perrieri	50.27	2.00e-93	335.00
IUUC-Loc-052451	Lepisosteus oculatus	32.20	2.00e-30	125.00
IUUC-Laf-053864	Loxodonta africana	32.37	3.00e-28	118.00
IUUC-Mcc-055705	Macaca mulatta	29.34	1.00e-23	103.00
IUUC-Meu-055926	Macropus eugenii	31.91	1.00e-27	116.00
IUUC-Mtr-058556	Medicago truncatula	62.87	3.00e-139	487.00
IUUC-Mmr-060836	Microcebus murinus	32.37	9.00e-28	117.00
IUUC-Mdo-062534	Monodelphis domestica	29.82	2.00e-26	112.00
IUUC-Mmu-063560	Mus musculus	33.20	3.00e-28	118.00
IUUC-Mac-065134	Musa acuminata	56.63	1.00e-115	409.00
IUUC-Mpu-066031	Mustela putorius furo	32.78	4.00e-28	118.00
IUUC-Mlu-068051	Myotis lucifugus	32.64	3.00e-27	115.00
IUUC-Nle-069080	Nomascus leucogenys	33.20	1.00e-28	119.00
IUUC-Opr-070787	Ochotona princeps	30.25	6.00e-28	117.00
IUUC-Ont-071952	Oreochromis niloticus	28.27	1.00e-30	127.00
IUUC-Oan-073334	Ornithorhynchus anatinus	31.91	2.00e-20	92.40
IUUC-Oba-075175	Oryza barthii	51.78	8.00e-95	340.00
IUUC-Obr-076393	Oryza brachyantha	52.19	1.00e-94	339.00
IUUC-Ogl-077603	Oryza glaberrima	46.42	1.00e-53	202.00
IUUC-Ogu-078211	Oryza glumaepatula	51.51	1.00e-94	339.00
IUUC-Oin-079554	Oryza indica	59.51	9.00e-92	329.00
IUUC-Olo-080922	Oryza longistaminata	46.69	4.00e-60	224.00
IUUC-Ome-081127	Oryza meridionalis	47.21	5.00e-78	284.00
IUUC-Oni-082376	Oryza nivara	51.51	2.00e-94	338.00
IUUC-Opu-083163	Oryza punctata	50.82	5.00e-94	337.00
IUUC-Oru-084311	Oryza rufipogon	51.51	5.00e-94	337.00
IUUC-Osa-085762	Oryza sativa	45.83	6.00e-53	200.00
IUUC-Oga-088804	Otolemur garnettii	31.32	2.00e-28	119.00
IUUC-Oar-090095	Ovis aries	31.95	3.00e-27	115.00
IUUC-Ptr-090731	Pan troglodytes	32.78	3.00e-28	118.00
IUUC-Pan-092595	Papio anubis	31.95	7.00e-28	117.00
IUUC-Psi-093866	Pelodiscus sinensis	33.06	3.00e-33	135.00
IUUC-Pma-094236	Petromyzon marinus	27.84	7.00e-31	127.00
IUUC-Pfo-096095	Poecilia formosa	30.94	5.00e-34	137.00
IUUC-Pab-098385	Pongo abelii	32.78	3.00e-28	118.00
IUUC-Pop-099433	Populus trichocarpa	61.68	2.00e-135	474.00
IUUC-Pca-101119	Procavia capensis	32.94	3.00e-24	105.00
IUUC-Ppe-101677	Prunus persica	64.75	9.00e-142	496.00
IUUC-Pva-102726	Pteropus vampyrus	32.78	7.00e-30	124.00
IUUC-Rno-105576	Rattus norvegicus	32.78	6.00e-28	117.00
IUUC-Sha-106774	Sarcophilus harrisii	31.06	1.00e-26	113.00
IUUC-Sit-109988	Setaria italica	49.32	8.00e-104	370.00
IUUC-Sly-110864	Solanum lycopersicum	58.00	1.00e-100	359.00
IUUC-Sar-113060	Sorex araneus	31.22	2.00e-26	112.00
IUUC-Sbi-114699	Sorghum bicolor	49.59	3.00e-103	368.00
IUUC-Ssc-116445	Sus scrofa	32.37	1.00e-27	117.00
IUUC-Tru-117834	Takifugu rubripes	26.39	2.00e-28	119.00
IUUC-Tni-119651	Tetraodon nigroviridis	26.57	1.00e-28	120.00
IUUC-Tca-121318	Theobroma cacao	65.85	2.00e-139	488.00
IUUC-Tae-124184	Triticum aestivum	50.27	3.00e-101	361.00
IUUC-Tur-126226	Triticum urartu	59.83	1.00e-81	295.00
IUUC-Tbe-128079	Tupaia belangeri	26.10	2.00e-13	69.30
IUUC-Ttr-128391	Tursiops truncatus	31.40	6.00e-24	104.00
IUUC-Vvi-131148	Vitis vinifera	63.78	4.00e-127	447.00
IUUC-Xtr-132743	Xenopus tropicalis	28.57	4.00e-29	121.00
IUUC-Xma-133722	Xiphophorus maculatus	29.17	2.00e-35	142.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence