iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000031174.6	ENSRNOT00000064442.3	ENSRNOP00000060764.1
ENSRNOG00000031174.6	ENSRNOT00000044738.4	ENSRNOP00000048259.3
ENSRNOG00000031174.6	ENSRNOT00000091681.1	ENSRNOP00000074418.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
miRTarBase	microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/Other	90.76	0.00e+00	1319.00	IUUC-Hsa-046946

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAATTANPEM TSDVPSLGPT IASGNPGPGI QGGGAVVQRA IKRRSGLDFD DEGEVNSKFL 60
RCDDEQMCND KERFARSDDE QSSADKERLA RENHSEIERR RRNKMTAYIT ELSDMVPTCS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCGACCATG GCGGCGACTA CAGCTAACCC AGGTGAGACT GAAAGGACTG ACAAGTACGG 60
AGAGCCAAGC AGAGCTGGAG GGCCGTGGCG TTCGGGTGTT GGGGGAGGGG TGTCGAGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR011598--bHLH_dom
IPR001067--Nuc_translocat
IPR001610--PAC
IPR000014--PAS
IPR013767--PAS_fold

PROSITE

PS50888--BHLH
PS50112--PAS

Pfam

PF00010--HLH
PF00989--PAS

PRINTS

PR00785--NCTRNSLOCATR

SMART

SM00353--HLH
SM00086--PAC
SM00091--PAS

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016604--C:nuclear body
GO:0090575--C:RNA polymerase II transcription factor complex
GO:0004874--F:aryl hydrocarbon receptor activity
GO:0035326--F:enhancer binding
GO:0043565--F:sequence-specific DNA binding
GO:0003713--F:transcription coactivator activity
GO:0003705--F:transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
GO:0030154--P:cell differentiation
GO:0001892--P:embryonic placenta development
GO:0046886--P:positive regulation of hormone biosynthetic process
GO:0033235--P:positive regulation of protein sumoylation
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0010575--P:positive regulation of vascular endothelial growth factor production
GO:0043619--P:regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0001666--P:response to hypoxia
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001940	Ailuropoda melanoleuca	89.51	0.00e+00	1297.00
IUUC-Apl-003615	Anas platyrhynchos	78.62	0.00e+00	1218.00
IUUC-Aca-005047	Anolis carolinensis	75.84	0.00e+00	1172.00
IUUC-Bta-012420	Bos taurus	90.67	0.00e+00	1357.00
IUUC-Cja-019740	Callithrix jacchus	89.89	0.00e+00	1292.00
IUUC-Cfa-020981	Canis familiaris	89.90	0.00e+00	1290.00
IUUC-Cpo-021428	Cavia porcellus	89.71	0.00e+00	1280.00
IUUC-Csa-023451	Chlorocebus sabaeus	91.01	0.00e+00	1348.00
IUUC-Cho-024979	Choloepus hoffmanni	71.12	3.00e-149	522.00
IUUC-Cne-027059	Cryptococcus neoformans	31.76	3.00e-08	54.70
IUUC-Dno-029839	Dasypus novemcinctus	84.98	0.00e+00	1318.00
IUUC-Eca-034359	Equus caballus	86.38	0.00e+00	1279.00
IUUC-Fca-035413	Felis catus	86.31	0.00e+00	1317.00
IUUC-Gga-041165	Gallus gallus	76.46	0.00e+00	1174.00
IUUC-Ggo-045192	Gorilla gorilla	90.91	0.00e+00	1286.00
IUUC-Hsa-046946	Homo sapiens	90.76	0.00e+00	1283.00
IUUC-Itr-048123	Ictidomys tridecemlineatus	90.70	0.00e+00	1376.00
IUUC-Lch-050137	Latimeria chalumnae	63.79	0.00e+00	898.00
IUUC-Laf-053433	Loxodonta africana	89.53	0.00e+00	1324.00
IUUC-Mcc-055174	Macaca mulatta	90.51	0.00e+00	1337.00
IUUC-Mga-059606	Meleagris gallopavo	75.68	0.00e+00	1120.00
IUUC-Mmr-060626	Microcebus murinus	87.28	0.00e+00	1290.00
IUUC-Mdo-062779	Monodelphis domestica	84.04	0.00e+00	1268.00
IUUC-Mmu-064192	Mus musculus	94.88	0.00e+00	1463.00
IUUC-Mpu-066471	Mustela putorius furo	89.93	0.00e+00	1228.00
IUUC-Mlu-066968	Myotis lucifugus	89.53	0.00e+00	1393.00
IUUC-Nle-069762	Nomascus leucogenys	90.44	0.00e+00	1302.00
IUUC-Oan-073371	Ornithorhynchus anatinus	71.73	0.00e+00	1026.00
IUUC-Ocu-074390	Oryctolagus cuniculus	80.90	0.00e+00	1192.00
IUUC-Oga-088408	Otolemur garnettii	89.81	0.00e+00	1347.00
IUUC-Oar-089959	Ovis aries	90.26	0.00e+00	1368.00
IUUC-Ptr-091057	Pan troglodytes	90.89	0.00e+00	1301.00
IUUC-Pan-092602	Papio anubis	90.02	0.00e+00	1329.00
IUUC-Psi-093661	Pelodiscus sinensis	76.81	0.00e+00	1231.00
IUUC-Pab-098708	Pongo abelii	90.89	0.00e+00	1308.00
IUUC-Sha-107369	Sarcophilus harrisii	83.88	0.00e+00	1253.00
IUUC-Smo-108833	Selaginella moellendorffii	34.78	6.00e-05	43.10
IUUC-Sar-113492	Sorex araneus	82.16	0.00e+00	664.00
IUUC-Ssc-115814	Sus scrofa	91.01	0.00e+00	1353.00
IUUC-Tgu-116662	Taeniopygia guttata	73.82	0.00e+00	1129.00
IUUC-Tni-120034	Tetraodon nigroviridis	55.99	0.00e+00	707.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence