iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mvi-060362

Ensembl Protein ID

MVLG_02810T0

UniProt Accession

U5H6A7; U5H6A7_USTV1

Genbank Protein ID

KDE06923.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

AEIJ01000268

Gene Name

YTM1; MVLG_02810

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MVLG_02810	MVLG_02810T0	MVLG_02810T0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-30	103.1	407	443

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgv 34
           gHt++v+++     +  l++sGs D t+k+WD+r+ +
   Q: 407  GHTGPVSSVVGhpKEsLLIASGSFDSTVKIWDVRSPK 443
           8********7786335889**************9876 PP

Organism

Microbotryum violaceum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSLTETTYPS VLESPVNGDA PTTASTTATG EERQIAIRLT TQDAPYEIPA TKFLVPASWR 60
RFHLSQLINK VLNKDESTPF DFLINQTLLR SSLGAYCAQS GVSEEVTLEI EYLPSTLPPQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTGAGTGGT CGACTGTCGC TCGTCGACGT CAGCCCGCTA CTCTAGGAAC GCCTCAATCC 60
GCGGCTCGCA CTTTTTCGAC CATGTCCTTG ACTGAGACGA CCTACCCGAG TGTGCTGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	27.33	2.00e-35	141.00
IUUC-Aml-001997	Ailuropoda melanoleuca	30.04	1.00e-37	149.00
IUUC-Atr-002544	Amborella trichopoda	25.49	8.00e-34	136.00
IUUC-Apl-003981	Anas platyrhynchos	30.90	6.00e-36	143.00
IUUC-Aca-004370	Anolis carolinensis	28.79	8.00e-39	152.00
IUUC-Aly-006455	Arabidopsis lyrata	25.70	6.00e-37	146.00
IUUC-Ath-006669	Arabidopsis thaliana	25.05	2.00e-32	131.00
IUUC-Ago-007864	Ashbya gossypii	30.56	1.00e-45	175.00
IUUC-Acl-008177	Aspergillus clavatus	29.76	9.00e-44	169.00
IUUC-Afl-008617	Aspergillus flavus	30.56	6.00e-45	173.00
IUUC-Afu-008752	Aspergillus fumigatus	29.34	2.00e-42	164.00
IUUC-Ani-009136	Aspergillus nidulans	31.09	2.00e-43	168.00
IUUC-Ang-009701	Aspergillus niger	28.54	1.00e-37	149.00
IUUC-Aor-009884	Aspergillus oryzae	30.56	3.00e-45	174.00
IUUC-Ate-010472	Aspergillus terreus	28.84	2.00e-20	90.90
IUUC-Ame-011432	Astyanax mexicanus	28.12	2.00e-38	151.00
IUUC-Bgr-012218	Blumeria graminis	30.08	7.00e-41	159.00
IUUC-Bta-012829	Bos taurus	30.65	3.00e-40	157.00
IUUC-Bci-013953	Botrytis cinerea	29.56	2.00e-40	158.00
IUUC-Bdi-014351	Brachypodium distachyon	27.67	4.00e-37	147.00
IUUC-Bol-015618	Brassica oleracea	26.12	1.00e-30	125.00
IUUC-Bra-017876	Brassica rapa	25.99	2.00e-35	141.00
IUUC-Cel-018569	Caenorhabditis elegans	32.75	4.00e-15	73.90
IUUC-Cja-019468	Callithrix jacchus	30.43	7.00e-38	149.00
IUUC-Cfa-020471	Canis familiaris	30.00	1.00e-36	145.00
IUUC-Cpo-022260	Cavia porcellus	31.30	2.00e-40	157.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	28.61	2.00e-34	138.00
IUUC-Csa-023989	Chlorocebus sabaeus	30.59	3.00e-38	150.00
IUUC-Cho-024426	Choloepus hoffmanni	29.43	2.00e-29	121.00
IUUC-Cin-025789	Ciona intestinalis	29.03	8.00e-46	176.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	33.06	3.00e-08	50.10
IUUC-Cne-027063	Cryptococcus neoformans	33.33	2.00e-55	207.00
IUUC-Dre-027907	Danio rerio	27.68	3.00e-39	154.00
IUUC-Dno-029225	Dasypus novemcinctus	30.87	5.00e-41	160.00
IUUC-Dse-031308	Dothistroma septosporum	30.60	1.00e-46	179.00
IUUC-Dme-032189	Drosophila melanogaster	25.61	2.00e-34	138.00
IUUC-Ete-032247	Echinops telfairi	27.90	1.00e-32	132.00
IUUC-Eca-034285	Equus caballus	30.65	2.00e-40	158.00
IUUC-Eeu-035322	Erinaceus europaeus	28.47	5.00e-34	136.00
IUUC-Fca-036114	Felis catus	30.43	1.00e-39	155.00
IUUC-Fal-036891	Ficedula albicollis	28.57	5.00e-31	126.00
IUUC-Fox-037965	Fusarium oxysporum	29.13	2.00e-36	145.00
IUUC-Fso-038244	Fusarium solani	28.98	8.00e-38	149.00
IUUC-Gmo-039040	Gadus morhua	27.90	4.00e-42	163.00
IUUC-Ggr-040093	Gaeumannomyces graminis	27.64	8.00e-28	116.00
IUUC-Gga-040610	Gallus gallus	29.69	1.00e-39	155.00
IUUC-Gac-042117	Gasterosteus aculeatus	27.55	3.00e-41	160.00
IUUC-Gma-043425	Glycine max	27.77	1.00e-38	152.00
IUUC-Ggo-045179	Gorilla gorilla	30.65	8.00e-40	155.00
IUUC-Hsa-046114	Homo sapiens	30.65	6.00e-39	153.00
IUUC-Hvu-047331	Hordeum vulgare	25.97	7.00e-28	116.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	30.43	3.00e-39	154.00
IUUC-Kpa-049304	Komagataella pastoris	30.59	4.00e-50	190.00
IUUC-Lch-050655	Latimeria chalumnae	26.76	1.00e-23	102.00
IUUC-Lpe-051675	Leersia perrieri	25.98	7.00e-36	143.00
IUUC-Loc-052868	Lepisosteus oculatus	29.18	5.00e-38	150.00
IUUC-Lma-053258	Leptosphaeria maculans	26.65	5.00e-35	142.00
IUUC-Laf-053993	Loxodonta africana	30.22	4.00e-40	157.00
IUUC-Mcc-055128	Macaca mulatta	24.78	7.00e-21	92.80
IUUC-Meu-056501	Macropus eugenii	29.09	2.00e-29	121.00
IUUC-Mor-057114	Magnaporthe oryzae	30.34	8.00e-37	146.00
IUUC-Mpo-057463	Magnaporthe poae	37.27	7.00e-18	82.00
IUUC-Mtr-058367	Medicago truncatula	26.52	5.00e-33	133.00
IUUC-Mla-059107	Melampsora laricipopulina	36.76	4.00e-82	296.00
IUUC-Mga-059745	Meleagris gallopavo	30.00	1.00e-36	145.00
IUUC-Mdo-062257	Monodelphis domestica	30.00	3.00e-40	157.00
IUUC-Mmu-063546	Mus musculus	30.13	7.00e-39	153.00
IUUC-Mac-065540	Musa acuminata	26.09	2.00e-34	138.00
IUUC-Mpu-066284	Mustela putorius furo	30.43	8.00e-40	156.00
IUUC-Mlu-067241	Myotis lucifugus	30.43	5.00e-39	153.00
IUUC-Nfi-068260	Neosartorya fischeri	30.68	2.00e-43	168.00
IUUC-Ncr-068719	Neurospora crassa	28.01	8.00e-35	139.00
IUUC-Nle-068981	Nomascus leucogenys	30.43	1.00e-36	145.00
IUUC-Opr-071218	Ochotona princeps	29.16	1.00e-34	138.00
IUUC-Ont-071646	Oreochromis niloticus	28.45	1.00e-37	149.00
IUUC-Oan-073453	Ornithorhynchus anatinus	29.22	7.00e-43	166.00
IUUC-Ocu-074008	Oryctolagus cuniculus	30.22	2.00e-40	158.00
IUUC-Oba-075712	Oryza barthii	23.97	8.00e-26	109.00
IUUC-Obr-076721	Oryza brachyantha	26.78	1.00e-35	142.00
IUUC-Ogl-077229	Oryza glaberrima	26.03	4.00e-36	144.00
IUUC-Ogu-078977	Oryza glumaepatula	23.97	6.00e-26	110.00
IUUC-Oin-079683	Oryza indica	26.14	8.00e-37	145.00
IUUC-Ome-081834	Oryza meridionalis	26.36	1.00e-36	146.00
IUUC-Oni-082507	Oryza nivara	25.71	1.00e-33	135.00
IUUC-Opu-083396	Oryza punctata	26.25	1.00e-36	145.00
IUUC-Oru-085220	Oryza rufipogon	25.71	2.00e-33	134.00
IUUC-Osa-085767	Oryza sativa	26.14	8.00e-37	145.00
IUUC-Ola-087420	Oryzias latipes	28.35	8.00e-41	159.00
IUUC-Olu-087740	Ostreococcus lucimarinus	35.90	4.00e-16	77.40
IUUC-Oga-088264	Otolemur garnettii	30.80	1.00e-37	149.00
IUUC-Oar-089335	Ovis aries	30.22	9.00e-39	152.00
IUUC-Ptr-091320	Pan troglodytes	30.65	6.00e-39	153.00
IUUC-Pan-092833	Papio anubis	30.37	1.00e-38	152.00
IUUC-Psi-093504	Pelodiscus sinensis	29.44	2.00e-38	151.00
IUUC-Pma-094189	Petromyzon marinus	27.90	4.00e-40	157.00
IUUC-Pno-094929	Phaeosphaeria nodorum	26.85	6.00e-36	143.00
IUUC-Ppa-095429	Physcomitrella patens	30.15	2.00e-44	171.00
IUUC-Pfo-096337	Poecilia formosa	27.65	2.00e-42	164.00
IUUC-Pab-097571	Pongo abelii	31.09	3.00e-39	154.00
IUUC-Pop-099977	Populus trichocarpa	24.78	1.00e-33	135.00
IUUC-Pca-100394	Procavia capensis	27.68	5.00e-28	116.00
IUUC-Ppe-101848	Prunus persica	28.38	4.00e-41	160.00
IUUC-Pgr-103637	Puccinia graminis	38.41	5.00e-82	296.00
IUUC-Ptt-103781	Puccinia triticina	37.89	9.00e-85	305.00
IUUC-Pte-104135	Pyrenophora teres	27.86	1.00e-32	134.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	28.34	2.00e-36	145.00
IUUC-Rno-105114	Rattus norvegicus	30.43	4.00e-39	153.00
IUUC-Sce-106401	Saccharomyces cerevisiae	31.67	3.00e-55	207.00
IUUC-Sha-107122	Sarcophilus harrisii	30.58	4.00e-40	157.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	32.89	1.00e-56	212.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.75	1.00e-42	165.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	29.34	2.00e-43	168.00
IUUC-Smo-108761	Selaginella moellendorffii	28.38	3.00e-40	157.00
IUUC-Sit-110311	Setaria italica	26.05	2.00e-32	131.00
IUUC-Sly-111178	Solanum lycopersicum	26.33	4.00e-37	147.00
IUUC-Stu-112778	Solanum tuberosum	27.51	1.00e-38	152.00
IUUC-Sar-113596	Sorex araneus	29.93	8.00e-26	109.00
IUUC-Sbi-114193	Sorghum bicolor	26.04	9.00e-33	132.00
IUUC-Sre-115002	Sporisorium reilianum	31.78	5.00e-53	200.00
IUUC-Ssc-116066	Sus scrofa	30.13	5.00e-38	150.00
IUUC-Tgu-117048	Taeniopygia guttata	29.66	1.00e-34	138.00
IUUC-Tni-119820	Tetraodon nigroviridis	28.42	1.00e-39	155.00
IUUC-Tca-121605	Theobroma cacao	27.07	2.00e-39	154.00
IUUC-Tre-121947	Trichoderma reesei	28.18	7.00e-37	146.00
IUUC-Tvi-122481	Trichoderma virens	27.89	5.00e-36	143.00
IUUC-Tae-123504	Triticum aestivum	26.75	6.00e-36	143.00
IUUC-Tur-126586	Triticum urartu	25.74	3.00e-30	124.00
IUUC-Tme-126900	Tuber melanosporum	30.77	9.00e-48	182.00
IUUC-Ttr-129041	Tursiops truncatus	36.22	4.00e-23	100.00
IUUC-Uma-129628	Ustilago maydis	31.61	2.00e-44	171.00
IUUC-Vpa-130260	Vicugna pacos	30.65	3.00e-40	157.00
IUUC-Vvi-131009	Vitis vinifera	27.29	7.00e-39	153.00
IUUC-Xtr-132083	Xenopus tropicalis	29.65	7.00e-38	149.00
IUUC-Xma-133094	Xiphophorus maculatus	28.51	4.00e-43	167.00
IUUC-Yli-134531	Yarrowia lipolytica	25.24	7.00e-30	123.00
IUUC-Zma-135509	Zea mays	26.36	2.00e-36	144.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence