iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000025735.6	ENSRNOT00000079770.1	ENSRNOP00000074405.1
ENSRNOG00000025735.6	ENSRNOT00000040373.4	ENSRNOP00000044634.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
RAID2
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-36	121.8	55	91
UBD/Beta-Prp	2.40e-66	224.3	162	344

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsdtllvsGsdDgtikvWDlrtgvllk 37
           gH++ vt +++ d +  ++s D+ti+ WD+rtg +l+
   Q: 55   GHESYVTFCQLEDETAFTCSADCTIRSWDVRTGQCLQ 91
           89*********44889*******************98 PP

UBD/Beta-Prp

   S: 63   dgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnl 151
            g +lvtgs+D+t+kvw + +g+c +tl+gh+  vl+l ++ s+++  +Gs d t+r wd+ +g+ l+ ++++h+g+v c+++ +  +l
   Q: 162  GGGLLVTGSSDDTAKVWQVASGCCHQTLRGHTGAVLCLVLDVSSHTAFTGSTDATVRAWDILSGEQLR-VFREHQGSVICLELTD--RL 247
           56689999999999999999999999999999999999999999999999999999999999999999.9999999999999988..99 PP
   S: 152  lvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsg 240
           l sGs+Drtv+ W   tg+ + t++  h +sv  l+++     l +gs d   + +d q+g   r ++ght  +++++++  ++ l+++
   Q: 248  LYSGSADRTVKCWLADTGERVCTFSA-HRHSVSALKYHA--GTLFTGSGDACARAFDAQSGVLQRVFRGHTFVINCLQVH--GQVLYTA 331
           99999999999999999999999997.999999999999..579999999999999999999999999999999999999..9999999 PP
   S: 241  ssDgsiriWdlrs 253
           s+Dg +r+Wd+r 
   Q: 332  SHDGALRFWDVRG 344
           9999999999875 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MGSSGSALRV CAGHRGGINW LSLSPDGQRL LTGSEDGTAR LWSTVDGQCC ALLQGHESYV 60
TFCQLEDETA FTCSADCTIR SWDVRTGQCL QVYRGHTSIV NRILVANDQL FSSSYDRTAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTGTTCCGC GCTCCGCTTC CCGGGTTATT CTGCCGGCTT CAGACCTGGT GGGCGCACCC 60
CGAGGCAGAG GCGCCCACCC CTCCTGAGCC CCGAGAAAGT TCTGAGTAGG GGAGGTCTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001210	Ailuropoda melanoleuca	87.69	9.00e-96	342.00
IUUC-Apl-004074	Anas platyrhynchos	64.29	3.00e-99	354.00
IUUC-Aca-004913	Anolis carolinensis	67.80	1.00e-147	515.00
IUUC-Bta-013331	Bos taurus	83.46	1.00e-180	625.00
IUUC-Cja-019968	Callithrix jacchus	86.32	0.00e+00	659.00
IUUC-Cfa-020996	Canis familiaris	90.08	8.00e-126	443.00
IUUC-Cpo-021901	Cavia porcellus	81.96	2.00e-153	535.00
IUUC-Csa-023634	Chlorocebus sabaeus	88.84	4.00e-126	444.00
IUUC-Cho-024618	Choloepus hoffmanni	65.02	1.00e-82	299.00
IUUC-Dno-029991	Dasypus novemcinctus	79.59	5.00e-172	597.00
IUUC-Dor-031111	Dipodomys ordii	83.44	6.00e-149	520.00
IUUC-Ete-032821	Echinops telfairi	76.52	5.00e-45	173.00
IUUC-Eca-034385	Equus caballus	86.81	4.00e-119	421.00
IUUC-Fca-035672	Felis catus	85.50	3.00e-132	463.00
IUUC-Fal-036601	Ficedula albicollis	67.62	1.00e-148	519.00
IUUC-Gga-040454	Gallus gallus	68.80	2.00e-153	534.00
IUUC-Ggo-045560	Gorilla gorilla	87.82	1.00e-139	489.00
IUUC-Hsa-046859	Homo sapiens	90.08	3.00e-126	444.00
IUUC-Itr-048107	Ictidomys tridecemlineatus	73.16	9.00e-140	489.00
IUUC-Lch-049458	Latimeria chalumnae	59.47	2.00e-130	458.00
IUUC-Loc-052940	Lepisosteus oculatus	58.16	6.00e-128	450.00
IUUC-Laf-053931	Loxodonta africana	84.68	7.00e-169	586.00
IUUC-Mcc-055629	Macaca mulatta	87.13	2.00e-177	615.00
IUUC-Meu-056313	Macropus eugenii	73.14	4.00e-161	560.00
IUUC-Mga-059418	Meleagris gallopavo	66.67	1.00e-79	290.00
IUUC-Mmr-060958	Microcebus murinus	87.60	6.00e-123	433.00
IUUC-Mdo-061978	Monodelphis domestica	69.88	2.00e-134	473.00
IUUC-Mmu-063108	Mus musculus	96.32	0.00e+00	746.00
IUUC-Mpu-066501	Mustela putorius furo	88.15	4.00e-146	510.00
IUUC-Mlu-067322	Myotis lucifugus	83.95	0.00e+00	630.00
IUUC-Nle-069571	Nomascus leucogenys	85.98	1.00e-154	539.00
IUUC-Opr-070837	Ochotona princeps	77.50	8.00e-48	183.00
IUUC-Oan-072939	Ornithorhynchus anatinus	65.35	6.00e-120	423.00
IUUC-Ocu-074607	Oryctolagus cuniculus	84.03	2.00e-172	598.00
IUUC-Oga-088689	Otolemur garnettii	90.35	0.00e+00	631.00
IUUC-Oar-089291	Ovis aries	75.61	7.00e-120	422.00
IUUC-Ptr-090482	Pan troglodytes	86.58	0.00e+00	639.00
IUUC-Pan-092460	Papio anubis	86.05	0.00e+00	631.00
IUUC-Psi-093758	Pelodiscus sinensis	66.84	3.00e-154	537.00
IUUC-Pma-094422	Petromyzon marinus	49.69	6.00e-82	297.00
IUUC-Pca-100969	Procavia capensis	63.57	2.00e-41	162.00
IUUC-Pva-102148	Pteropus vampyrus	79.69	4.00e-137	480.00
IUUC-Sha-107050	Sarcophilus harrisii	68.18	7.00e-102	363.00
IUUC-Ssc-116247	Sus scrofa	82.98	2.00e-136	478.00
IUUC-Tgu-116656	Taeniopygia guttata	65.09	4.00e-98	350.00
IUUC-Tsy-118911	Tarsius syrichta	74.79	3.00e-100	357.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence