iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pte-104274

Ensembl Protein ID

EFQ90375

UniProt Accession

E3RV67; E3RV67_PYRTT

Genbank Protein ID

EFQ90375.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

GL535240

Gene Name

PTT_13046

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTT_13046	EFQ90375	EFQ90375

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.80e-29	98.8	187	218
UBD/Beta-Prp	2.70e-67	226.3	13	296

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf...sd.tllvsGsdDgtikvWDlrtg 33
           v+ +++   sd ++l++ sdD t+kvWD++t 
   Q: 187  VNFIDYypqSDkPYLLTTSDDRTVKVWDYTTK 218
           455555899999****************9986 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           +++++ ++f+p +++++t+ ++g + +w++ t++ +++++  + +v+a +f+ +++++v gs+D +++v++++t++ v ++++h d++++++++p++ +++
   Q: 13   SERVKGIDFHPTEPWILTTLYSGHVHIWSYITQSIVKTFELTDVPVRAGRFIARKNWIVAGSDDFHLRVYNYNTSEKVTSFEAHPDYIRAIAVHPTQPFVL 113
           678999*********************************************************************************************** PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvklwd 208
           ++s+d ti++wd+++ ++  + ++gh++ v++++++p++ n ++s++lDrtv++W+l + +  +tl+    + v+ +++ +++  ++l++ s+d+tvk+wd
   Q: 114  TASDDMTIKLWDWDKSWKCVQEFAGHQHYVMGIAINPKDpNTFASACLDRTVKIWSLGSSTPNYTLEAHEAKGVNFIDYYPQSdkPYLLTTSDDRTVKVWD 214
           **************9998888**********************************************988999*****9988888**************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvni 291
           + t+  + tl+ght+nv+    +p+   ++sgs+Dg+i+iW + +  l ++l++  ++ ++va+ + g+n ++lg +d+ v i
   Q: 215  YTTKALIATLEGHTSNVSFAVYHPELPVIISGSEDGTIKIWHSSTYRLEQSLNYGLERAWCVAY-QKGKNGVALGFDDGAVVI 296
           ****************************************************************.888999988888887766 PP

Organism

Pyrenophora teres

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MRLDVKRQLF ARSERVKGID FHPTEPWILT TLYSGHVHIW SYITQSIVKT FELTDVPVRA 60
GRFIARKNWI VAGSDDFHLR VYNYNTSEKV TSFEAHPDYI RAIAVHPTQP FVLTASDDMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGTTTGG ACGTCAAGGT ACGAAACAAT GCGCAATTGG ACGCCGGCGC GGTACTCGGA 60
CATAGCTAAC CTGTCTGTGA CTATAGAGGC AGCTTTTTGC GCGGTCTGAG CGTGTCAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0000139--C:Golgi membrane
GO:0005634--C:nucleus
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0032511--P:late endosome to vacuole transport via multivesicular body sorting pathway
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

pte:PTT_13046

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	46.00	0.00e+00	773.00
IUUC-Aml-002154	Ailuropoda melanoleuca	55.45	0.00e+00	985.00
IUUC-Atr-003090	Amborella trichopoda	56.21	0.00e+00	900.00
IUUC-Apl-003976	Anas platyrhynchos	55.64	0.00e+00	979.00
IUUC-Aca-004301	Anolis carolinensis	55.89	0.00e+00	984.00
IUUC-Aly-005643	Arabidopsis lyrata	53.56	0.00e+00	889.00
IUUC-Ath-007630	Arabidopsis thaliana	53.54	0.00e+00	907.00
IUUC-Ago-007914	Ashbya gossypii	51.93	0.00e+00	852.00
IUUC-Acl-008237	Aspergillus clavatus	77.16	0.00e+00	1330.00
IUUC-Afl-008535	Aspergillus flavus	76.02	0.00e+00	1265.00
IUUC-Afu-008845	Aspergillus fumigatus	77.05	0.00e+00	1290.00
IUUC-Ani-009135	Aspergillus nidulans	75.79	0.00e+00	1264.00
IUUC-Ang-009654	Aspergillus niger	80.58	0.00e+00	1127.00
IUUC-Aor-009939	Aspergillus oryzae	77.02	0.00e+00	1346.00
IUUC-Ate-010355	Aspergillus terreus	77.41	0.00e+00	1284.00
IUUC-Ame-010922	Astyanax mexicanus	49.57	0.00e+00	843.00
IUUC-Bgr-012249	Blumeria graminis	74.69	0.00e+00	1253.00
IUUC-Bta-013579	Bos taurus	56.49	0.00e+00	897.00
IUUC-Bci-013866	Botrytis cinerea	76.62	0.00e+00	1234.00
IUUC-Bdi-015046	Brachypodium distachyon	53.04	0.00e+00	907.00
IUUC-Bol-015466	Brassica oleracea	51.82	0.00e+00	879.00
IUUC-Bra-016617	Brassica rapa	51.58	0.00e+00	875.00
IUUC-Cel-018387	Caenorhabditis elegans	50.12	0.00e+00	898.00
IUUC-Cja-019145	Callithrix jacchus	55.57	0.00e+00	987.00
IUUC-Cfa-020564	Canis familiaris	55.45	0.00e+00	985.00
IUUC-Cpo-022201	Cavia porcellus	55.45	0.00e+00	987.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	53.12	0.00e+00	871.00
IUUC-Csa-023383	Chlorocebus sabaeus	60.46	0.00e+00	760.00
IUUC-Cho-024454	Choloepus hoffmanni	53.25	0.00e+00	850.00
IUUC-Cin-025681	Ciona intestinalis	53.09	0.00e+00	908.00
IUUC-Csv-026012	Ciona savignyi	54.94	0.00e+00	902.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	71.32	0.00e+00	1146.00
IUUC-Cne-026986	Cryptococcus neoformans	58.27	0.00e+00	995.00
IUUC-Cme-027219	Cyanidioschyzon merolae	46.48	0.00e+00	780.00
IUUC-Dre-027846	Danio rerio	55.51	0.00e+00	980.00
IUUC-Dor-030462	Dipodomys ordii	54.72	0.00e+00	796.00
IUUC-Dse-031268	Dothistroma septosporum	77.54	0.00e+00	1318.00
IUUC-Dme-031791	Drosophila melanogaster	52.01	0.00e+00	905.00
IUUC-Ete-033166	Echinops telfairi	53.93	0.00e+00	640.00
IUUC-Eca-034180	Equus caballus	54.18	0.00e+00	941.00
IUUC-Eeu-035086	Erinaceus europaeus	43.49	1.00e-104	372.00
IUUC-Fca-036265	Felis catus	55.45	0.00e+00	985.00
IUUC-Fal-037202	Ficedula albicollis	55.00	0.00e+00	934.00
IUUC-Fox-037711	Fusarium oxysporum	75.67	0.00e+00	1189.00
IUUC-Fso-038268	Fusarium solani	74.67	0.00e+00	1179.00
IUUC-Gmo-039046	Gadus morhua	55.02	0.00e+00	972.00
IUUC-Ggr-039863	Gaeumannomyces graminis	77.07	0.00e+00	1226.00
IUUC-Gga-041112	Gallus gallus	55.20	0.00e+00	983.00
IUUC-Gac-041733	Gasterosteus aculeatus	55.51	0.00e+00	952.00
IUUC-Gma-044333	Glycine max	53.77	0.00e+00	919.00
IUUC-Ggo-044984	Gorilla gorilla	55.57	0.00e+00	985.00
IUUC-Hsa-046698	Homo sapiens	55.45	0.00e+00	985.00
IUUC-Hvu-047669	Hordeum vulgare	61.58	8.00e-140	488.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	55.45	0.00e+00	984.00
IUUC-Kpa-049265	Komagataella pastoris	58.45	0.00e+00	988.00
IUUC-Lch-050473	Latimeria chalumnae	55.39	0.00e+00	974.00
IUUC-Lpe-051579	Leersia perrieri	52.75	0.00e+00	892.00
IUUC-Loc-052675	Lepisosteus oculatus	54.96	0.00e+00	979.00
IUUC-Lma-053218	Leptosphaeria maculans	93.33	0.00e+00	1540.00
IUUC-Laf-053757	Loxodonta africana	55.19	0.00e+00	976.00
IUUC-Mcc-054859	Macaca mulatta	55.57	0.00e+00	986.00
IUUC-Meu-056174	Macropus eugenii	45.98	7.00e-92	330.00
IUUC-Mor-057264	Magnaporthe oryzae	76.18	0.00e+00	1203.00
IUUC-Mpo-057538	Magnaporthe poae	77.32	0.00e+00	1254.00
IUUC-Mtr-058310	Medicago truncatula	53.11	0.00e+00	911.00
IUUC-Mla-058937	Melampsora laricipopulina	55.82	0.00e+00	953.00
IUUC-Mga-059875	Meleagris gallopavo	54.95	0.00e+00	976.00
IUUC-Mvi-060240	Microbotryum violaceum	57.81	0.00e+00	1014.00
IUUC-Mmr-061261	Microcebus murinus	55.45	0.00e+00	985.00
IUUC-Mdo-062076	Monodelphis domestica	55.32	0.00e+00	987.00
IUUC-Mmu-063324	Mus musculus	55.32	0.00e+00	984.00
IUUC-Mac-064636	Musa acuminata	52.78	0.00e+00	896.00
IUUC-Mpu-065961	Mustela putorius furo	55.45	0.00e+00	984.00
IUUC-Mlu-067059	Myotis lucifugus	54.83	0.00e+00	959.00
IUUC-Nfi-068277	Neosartorya fischeri	76.96	0.00e+00	1279.00
IUUC-Ncr-068659	Neurospora crassa	74.33	0.00e+00	1260.00
IUUC-Nle-069034	Nomascus leucogenys	55.57	0.00e+00	986.00
IUUC-Opr-070334	Ochotona princeps	57.45	0.00e+00	927.00
IUUC-Ont-071563	Oreochromis niloticus	55.27	0.00e+00	973.00
IUUC-Oan-073416	Ornithorhynchus anatinus	55.26	0.00e+00	939.00
IUUC-Ocu-074522	Oryctolagus cuniculus	55.32	0.00e+00	981.00
IUUC-Oba-075760	Oryza barthii	52.20	0.00e+00	884.00
IUUC-Obr-076163	Oryza brachyantha	53.50	0.00e+00	892.00
IUUC-Ogl-077450	Oryza glaberrima	52.93	0.00e+00	909.00
IUUC-Ogu-078994	Oryza glumaepatula	52.20	0.00e+00	884.00
IUUC-Oin-079856	Oryza indica	52.45	0.00e+00	883.00
IUUC-Olo-080731	Oryza longistaminata	52.72	0.00e+00	870.00
IUUC-Ome-081554	Oryza meridionalis	49.51	0.00e+00	818.00
IUUC-Oni-082324	Oryza nivara	52.20	0.00e+00	884.00
IUUC-Opu-083400	Oryza punctata	50.30	0.00e+00	864.00
IUUC-Oru-084829	Oryza rufipogon	52.20	0.00e+00	884.00
IUUC-Osa-086026	Oryza sativa	53.06	0.00e+00	912.00
IUUC-Ola-087245	Oryzias latipes	55.04	0.00e+00	978.00
IUUC-Olu-087655	Ostreococcus lucimarinus	52.95	0.00e+00	904.00
IUUC-Oga-088163	Otolemur garnettii	53.36	0.00e+00	936.00
IUUC-Oar-089842	Ovis aries	55.20	0.00e+00	981.00
IUUC-Ptr-090501	Pan troglodytes	55.57	0.00e+00	986.00
IUUC-Pan-092011	Papio anubis	55.57	0.00e+00	987.00
IUUC-Psi-093308	Pelodiscus sinensis	55.33	0.00e+00	982.00
IUUC-Pma-094695	Petromyzon marinus	54.38	0.00e+00	910.00
IUUC-Pno-094785	Phaeosphaeria nodorum	95.82	9.00e-167	578.00
IUUC-Ppa-095911	Physcomitrella patens	54.10	0.00e+00	918.00
IUUC-Pfo-096587	Poecilia formosa	55.76	0.00e+00	982.00
IUUC-Pab-097926	Pongo abelii	54.14	0.00e+00	911.00
IUUC-Pop-099634	Populus trichocarpa	53.22	0.00e+00	911.00
IUUC-Pca-100965	Procavia capensis	54.35	0.00e+00	949.00
IUUC-Ppe-101470	Prunus persica	53.47	0.00e+00	915.00
IUUC-Pva-102451	Pteropus vampyrus	53.82	0.00e+00	784.00
IUUC-Pgr-103590	Puccinia graminis	56.33	0.00e+00	981.00
IUUC-Ptt-103868	Puccinia triticina	55.84	0.00e+00	976.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	94.27	0.00e+00	1575.00
IUUC-Rno-105979	Rattus norvegicus	48.43	0.00e+00	749.00
IUUC-Sce-106269	Saccharomyces cerevisiae	51.87	0.00e+00	886.00
IUUC-Sha-106905	Sarcophilus harrisii	55.32	0.00e+00	987.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	52.84	0.00e+00	882.00
IUUC-Spo-108299	Schizosaccharomyces pombe	53.03	0.00e+00	914.00
IUUC-Smo-108695	Selaginella moellendorffii	51.77	0.00e+00	894.00
IUUC-Sit-110239	Setaria italica	53.30	0.00e+00	914.00
IUUC-Sly-111775	Solanum lycopersicum	53.46	0.00e+00	904.00
IUUC-Stu-112906	Solanum tuberosum	52.87	0.00e+00	804.00
IUUC-Sar-113472	Sorex araneus	53.38	0.00e+00	717.00
IUUC-Sbi-114052	Sorghum bicolor	53.86	0.00e+00	920.00
IUUC-Sre-115040	Sporisorium reilianum	55.91	0.00e+00	956.00
IUUC-Ssc-115593	Sus scrofa	55.32	0.00e+00	984.00
IUUC-Tgu-117239	Taeniopygia guttata	55.51	0.00e+00	981.00
IUUC-Tru-118025	Takifugu rubripes	55.08	0.00e+00	974.00
IUUC-Tsy-118824	Tarsius syrichta	52.78	0.00e+00	719.00
IUUC-Tni-120142	Tetraodon nigroviridis	55.27	0.00e+00	971.00
IUUC-Tca-121613	Theobroma cacao	53.24	0.00e+00	911.00
IUUC-Tre-122072	Trichoderma reesei	73.84	0.00e+00	1249.00
IUUC-Tvi-122546	Trichoderma virens	74.42	0.00e+00	1259.00
IUUC-Tae-125488	Triticum aestivum	52.93	0.00e+00	908.00
IUUC-Tur-126283	Triticum urartu	46.42	0.00e+00	764.00
IUUC-Tme-127041	Tuber melanosporum	73.02	0.00e+00	1256.00
IUUC-Tbe-127770	Tupaia belangeri	55.92	0.00e+00	812.00
IUUC-Ttr-129294	Tursiops truncatus	55.45	0.00e+00	983.00
IUUC-Uma-129351	Ustilago maydis	55.39	0.00e+00	966.00
IUUC-Vda-129716	Verticillium dahliae	76.53	0.00e+00	1296.00
IUUC-Vpa-130037	Vicugna pacos	44.95	2.00e-114	405.00
IUUC-Vvi-131689	Vitis vinifera	53.72	0.00e+00	909.00
IUUC-Xtr-132633	Xenopus tropicalis	56.05	0.00e+00	978.00
IUUC-Xma-133347	Xiphophorus maculatus	55.64	0.00e+00	981.00
IUUC-Yli-134455	Yarrowia lipolytica	57.05	0.00e+00	942.00
IUUC-Zma-135867	Zea mays	53.36	0.00e+00	914.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence