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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105979
Ensembl Protein ID ENSRNOP00000071536.1
UniProt Accession A0A0G2K0P9; A0A0G2K0P9_RAT
Genbank Protein ID ENSRNOP00000071536
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID AABR07071243
Gene Name Copb2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000060723.1 ENSRNOT00000080434.1 ENSRNOP00000071536.1
Annotation
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.80e-15 56.8 182 223
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l+sG+dD  +k+WD+   +++++
   Q: 182  GHEKGVNCIDYysgGDkPYLISGADDRLVKIWDYQNKTCVQT 223
           8*********9999778****************999988875 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
PLRLDIKRKL TARSDRVKSV DLHPTEPWML ASLYNGSVCV WNHETQVSNK SYKIPALIMK 60
GARFVLFSPS VTSGKEAAAI HVYWLLCRVR SIRMVLHSDK LTFLALCPTM PLMWYSVINV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105979|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCTCTTCGAC TTGACATCAA GAGAAAGCTA ACTGCTAGGT CTGATCGGGT TAAGAGTGTG 60
GATTTGCATC CGACTGAGCC ATGGATGCTG GCTAGTCTTT ACAATGGCAG TGTGTGTGTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105979|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR011044--Quino_amine_DH_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005198--F:structural molecule activity
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:1901998--P:toxin transport
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000222 Aegilops tauschii 51.40 4.00e-178 618.00
IUUC-Aml-002154 Ailuropoda melanoleuca 84.40 0.00e+00 1263.00
IUUC-Atr-003090 Amborella trichopoda 53.98 0.00e+00 829.00
IUUC-Apl-003976 Anas platyrhynchos 83.45 0.00e+00 1251.00
IUUC-Aca-004301 Anolis carolinensis 83.72 0.00e+00 1254.00
IUUC-Aly-006508 Arabidopsis lyrata 53.04 0.00e+00 798.00
IUUC-Ath-007630 Arabidopsis thaliana 52.92 0.00e+00 815.00
IUUC-Ago-007914 Ashbya gossypii 40.05 2.00e-161 562.00
IUUC-Acl-008237 Aspergillus clavatus 49.11 0.00e+00 734.00
IUUC-Afl-008535 Aspergillus flavus 47.93 0.00e+00 682.00
IUUC-Afu-008845 Aspergillus fumigatus 48.98 0.00e+00 712.00
IUUC-Ani-009135 Aspergillus nidulans 48.70 0.00e+00 692.00
IUUC-Ang-009654 Aspergillus niger 48.21 0.00e+00 704.00
IUUC-Aor-009939 Aspergillus oryzae 48.70 0.00e+00 735.00
IUUC-Ate-010355 Aspergillus terreus 48.29 0.00e+00 687.00
IUUC-Ame-010922 Astyanax mexicanus 72.18 0.00e+00 1047.00
IUUC-Bgr-012249 Blumeria graminis 48.16 0.00e+00 693.00
IUUC-Bta-013579 Bos taurus 83.90 0.00e+00 1200.00
IUUC-Bci-013866 Botrytis cinerea 50.97 0.00e+00 704.00
IUUC-Bdi-015046 Brachypodium distachyon 53.12 0.00e+00 805.00
IUUC-Bol-016271 Brassica oleracea 53.31 0.00e+00 813.00
IUUC-Bra-016617 Brassica rapa 53.29 0.00e+00 782.00
IUUC-Cel-018387 Caenorhabditis elegans 57.92 0.00e+00 872.00
IUUC-Cja-019145 Callithrix jacchus 84.53 0.00e+00 1263.00
IUUC-Cfa-020564 Canis familiaris 84.53 0.00e+00 1264.00
IUUC-Cpo-022201 Cavia porcellus 84.53 0.00e+00 1265.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 50.92 0.00e+00 753.00
IUUC-Csa-023383 Chlorocebus sabaeus 81.27 0.00e+00 954.00
IUUC-Cho-024454 Choloepus hoffmanni 79.08 0.00e+00 1164.00
IUUC-Cin-025681 Ciona intestinalis 68.16 0.00e+00 999.00
IUUC-Csv-026012 Ciona savignyi 67.75 0.00e+00 991.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 46.38 0.00e+00 644.00
IUUC-Cne-026986 Cryptococcus neoformans 44.91 0.00e+00 709.00
IUUC-Cme-027219 Cyanidioschyzon merolae 41.33 5.00e-176 611.00
IUUC-Dre-027846 Danio rerio 81.28 0.00e+00 1229.00
IUUC-Dor-030462 Dipodomys ordii 78.31 0.00e+00 1046.00
IUUC-Dse-031268 Dothistroma septosporum 47.63 0.00e+00 714.00
IUUC-Dme-031791 Drosophila melanogaster 65.65 0.00e+00 960.00
IUUC-Ete-033166 Echinops telfairi 77.74 0.00e+00 869.00
IUUC-Eca-034180 Equus caballus 83.63 0.00e+00 1240.00
IUUC-Eeu-035086 Erinaceus europaeus 81.77 1.00e-165 577.00
IUUC-Fca-036265 Felis catus 84.53 0.00e+00 1264.00
IUUC-Fal-037202 Ficedula albicollis 83.22 0.00e+00 1196.00
IUUC-Fox-037711 Fusarium oxysporum 50.74 0.00e+00 665.00
IUUC-Fso-038268 Fusarium solani 48.51 0.00e+00 651.00
IUUC-Gmo-039046 Gadus morhua 80.60 0.00e+00 1216.00
IUUC-Ggr-039863 Gaeumannomyces graminis 49.04 0.00e+00 669.00
IUUC-Gga-041112 Gallus gallus 83.58 0.00e+00 1252.00
IUUC-Gac-041733 Gasterosteus aculeatus 80.84 0.00e+00 1176.00
IUUC-Gma-044333 Glycine max 53.98 0.00e+00 818.00
IUUC-Ggo-044984 Gorilla gorilla 84.26 0.00e+00 1261.00
IUUC-Hsa-046698 Homo sapiens 84.12 0.00e+00 1261.00
IUUC-Hvu-047669 Hordeum vulgare 53.67 8.00e-119 419.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 84.40 0.00e+00 1260.00
IUUC-Kpa-049265 Komagataella pastoris 42.51 0.00e+00 650.00
IUUC-Lch-050473 Latimeria chalumnae 82.90 0.00e+00 1248.00
IUUC-Lpe-051579 Leersia perrieri 53.35 0.00e+00 799.00
IUUC-Loc-052675 Lepisosteus oculatus 81.82 0.00e+00 1237.00
IUUC-Lma-053218 Leptosphaeria maculans 47.35 0.00e+00 698.00
IUUC-Laf-053757 Loxodonta africana 84.03 0.00e+00 1254.00
IUUC-Mcc-054859 Macaca mulatta 84.40 0.00e+00 1262.00
IUUC-Meu-056174 Macropus eugenii 93.73 2.00e-141 496.00
IUUC-Mor-057264 Magnaporthe oryzae 49.93 0.00e+00 675.00
IUUC-Mpo-057538 Magnaporthe poae 48.63 0.00e+00 679.00
IUUC-Mtr-058310 Medicago truncatula 53.58 0.00e+00 827.00
IUUC-Mla-058937 Melampsora laricipopulina 46.19 0.00e+00 670.00
IUUC-Mga-059875 Meleagris gallopavo 83.22 0.00e+00 1246.00
IUUC-Mvi-060240 Microbotryum violaceum 44.23 0.00e+00 679.00
IUUC-Mmr-061261 Microcebus murinus 84.53 0.00e+00 1263.00
IUUC-Mdo-062076 Monodelphis domestica 84.40 0.00e+00 1263.00
IUUC-Mmu-063324 Mus musculus 84.80 0.00e+00 1269.00
IUUC-Mac-064636 Musa acuminata 52.34 0.00e+00 807.00
IUUC-Mpu-065961 Mustela putorius furo 84.40 0.00e+00 1261.00
IUUC-Mlu-067059 Myotis lucifugus 82.86 0.00e+00 1227.00
IUUC-Nfi-068277 Neosartorya fischeri 48.63 0.00e+00 701.00
IUUC-Ncr-068659 Neurospora crassa 45.85 0.00e+00 681.00
IUUC-Nle-069034 Nomascus leucogenys 84.26 0.00e+00 1261.00
IUUC-Opr-070334 Ochotona princeps 84.10 0.00e+00 1251.00
IUUC-Ont-071563 Oreochromis niloticus 81.55 0.00e+00 1229.00
IUUC-Oan-073416 Ornithorhynchus anatinus 83.64 0.00e+00 1200.00
IUUC-Ocu-074522 Oryctolagus cuniculus 83.99 0.00e+00 1255.00
IUUC-Oba-075760 Oryza barthii 51.42 0.00e+00 776.00
IUUC-Obr-076163 Oryza brachyantha 53.52 0.00e+00 809.00
IUUC-Ogl-077450 Oryza glaberrima 52.77 0.00e+00 804.00
IUUC-Ogu-078994 Oryza glumaepatula 51.42 0.00e+00 775.00
IUUC-Oin-079856 Oryza indica 52.45 0.00e+00 784.00
IUUC-Olo-080731 Oryza longistaminata 50.67 0.00e+00 759.00
IUUC-Ome-081554 Oryza meridionalis 48.99 0.00e+00 710.00
IUUC-Oni-082324 Oryza nivara 51.42 0.00e+00 775.00
IUUC-Opu-083125 Oryza punctata 53.21 0.00e+00 773.00
IUUC-Oru-084829 Oryza rufipogon 51.42 0.00e+00 775.00
IUUC-Osa-086026 Oryza sativa 52.77 0.00e+00 807.00
IUUC-Ola-087245 Oryzias latipes 80.87 0.00e+00 1220.00
IUUC-Olu-087655 Ostreococcus lucimarinus 50.82 0.00e+00 778.00
IUUC-Oga-088163 Otolemur garnettii 80.51 0.00e+00 1189.00
IUUC-Oar-089842 Ovis aries 84.40 0.00e+00 1264.00
IUUC-Ptr-090501 Pan troglodytes 84.26 0.00e+00 1261.00
IUUC-Pan-092011 Papio anubis 84.40 0.00e+00 1263.00
IUUC-Psi-093308 Pelodiscus sinensis 83.45 0.00e+00 1249.00
IUUC-Pma-094695 Petromyzon marinus 73.10 0.00e+00 1083.00
IUUC-Pno-094785 Phaeosphaeria nodorum 58.28 8.00e-103 367.00
IUUC-Ppa-095911 Physcomitrella patens 53.59 0.00e+00 820.00
IUUC-Pfo-096587 Poecilia formosa 80.73 0.00e+00 1224.00
IUUC-Pab-097926 Pongo abelii 82.16 0.00e+00 1202.00
IUUC-Pop-099634 Populus trichocarpa 54.39 0.00e+00 817.00
IUUC-Pca-100965 Procavia capensis 83.15 0.00e+00 1236.00
IUUC-Ppe-101470 Prunus persica 53.98 0.00e+00 822.00
IUUC-Pva-102451 Pteropus vampyrus 83.13 0.00e+00 1120.00
IUUC-Pgr-103590 Puccinia graminis 48.03 0.00e+00 697.00
IUUC-Ptt-103868 Puccinia triticina 48.17 0.00e+00 697.00
IUUC-Pte-104274 Pyrenophora teres 48.43 0.00e+00 728.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 47.50 0.00e+00 677.00
IUUC-Sce-106269 Saccharomyces cerevisiae 40.08 4.00e-171 595.00
IUUC-Sha-106905 Sarcophilus harrisii 84.53 0.00e+00 1264.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 40.47 3.00e-180 625.00
IUUC-Spo-108299 Schizosaccharomyces pombe 41.10 0.00e+00 629.00
IUUC-Smo-108695 Selaginella moellendorffii 52.16 0.00e+00 787.00
IUUC-Sit-110239 Setaria italica 53.04 0.00e+00 808.00
IUUC-Sly-111775 Solanum lycopersicum 53.31 0.00e+00 810.00
IUUC-Stu-112906 Solanum tuberosum 52.31 0.00e+00 712.00
IUUC-Sar-113472 Sorex araneus 81.79 0.00e+00 1016.00
IUUC-Sbi-114052 Sorghum bicolor 54.07 0.00e+00 825.00
IUUC-Sre-115040 Sporisorium reilianum 45.86 0.00e+00 682.00
IUUC-Ssc-115593 Sus scrofa 84.40 0.00e+00 1261.00
IUUC-Tgu-117239 Taeniopygia guttata 83.99 0.00e+00 1257.00
IUUC-Tru-118025 Takifugu rubripes 80.89 0.00e+00 1220.00
IUUC-Tsy-118824 Tarsius syrichta 78.95 0.00e+00 987.00
IUUC-Tni-120142 Tetraodon nigroviridis 81.28 0.00e+00 1226.00
IUUC-Tca-121613 Theobroma cacao 53.71 0.00e+00 816.00
IUUC-Tre-122072 Trichoderma reesei 47.75 0.00e+00 702.00
IUUC-Tvi-122546 Trichoderma virens 47.34 0.00e+00 685.00
IUUC-Tae-125292 Triticum aestivum 53.58 0.00e+00 815.00
IUUC-Tur-126283 Triticum urartu 45.89 0.00e+00 656.00
IUUC-Tme-127041 Tuber melanosporum 49.16 0.00e+00 726.00
IUUC-Tbe-127770 Tupaia belangeri 77.86 0.00e+00 1050.00
IUUC-Ttr-129294 Tursiops truncatus 84.12 0.00e+00 1259.00
IUUC-Uma-129351 Ustilago maydis 44.37 0.00e+00 667.00
IUUC-Vda-129716 Verticillium dahliae 47.89 0.00e+00 706.00
IUUC-Vpa-130037 Vicugna pacos 83.24 1.00e-174 607.00
IUUC-Vvi-131689 Vitis vinifera 53.78 0.00e+00 815.00
IUUC-Xtr-132633 Xenopus tropicalis 82.63 0.00e+00 1242.00
IUUC-Xma-133347 Xiphophorus maculatus 81.00 0.00e+00 1226.00
IUUC-Yli-134455 Yarrowia lipolytica 44.29 0.00e+00 650.00
IUUC-Zma-135867 Zea mays 53.98 0.00e+00 816.00
Created Date 25-Jun-2017

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