iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026497

Ensembl Protein ID

ELA24221

UniProt Accession

L2FDT4; L2FDT4_COLGN

Genbank Protein ID

ELA24221.1

Protein Name

U5 snrnp complex

Genbank Nucleotide ID

KB021287

Gene Name

CGGC5_14248

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_14248	ELA24221	ELA24221

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-38	128.1	146	181
UBD/Beta-Prp	6.90e-56	189.2	56	262

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           gH++ v++++    +  llvsGsdDg+i +WD+rt 
   Q: 146  GHEEIVNAMDIskRGeELLVSGSDDGSIGLWDPRTK 181
           89999******996669***************9986 PP

UBD/Beta-Prp

   S: 45   lrslsgheaevtavkfspdgkilvtgseDrtikvw.dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvv 144
           + +l gh++e+ + kf+p+g+++++gs Dr i +w  + +++   +l+gh   +l+l++s++++ + s+s+d  +  wdle+g+ ++    gh+++vn + 
   Q: 56   VMELTGHSGEIFSAKFDPTGNFIASGSMDRSILLWrTYGDCENYGILNGHRGAILDLQWSRDSKIVYSASADTHLASWDLENGSRIR-RYVGHEEIVNAMD 155
           56899******************************9999**********************999999********************.9************ PP
   S: 145  vhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDg 244
           +++ g  llvsGs+D+ + lWd +t++ +++ +   + +++ +++++ g+e+ sg+ d+++k+wdl+++++++++ gh+d+v+s+r+sp+++ l+s ++D 
   Q: 156  ISKRGeELLVSGSDDGSIGLWDPRTKTAVDHIQT--EFPITAIAMSEAGNEVYSGGIDNDIKVWDLRKKSVIYSMLGHQDTVTSLRVSPDSQSLLSFAMDS 254
           ********************************86..9**************************************************************** PP
   S: 245  siriWdlr 252
           ++r Wd+r
   Q: 255  TVRTWDIR 262
           ******97 PP

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MSEKRPASDE PGSGQMIVKR QNVGSSTGAL ARLNGSGKSN ALVQTAPRTS NLQAPVMELT 60
GHSGEIFSAK FDPTGNFIAS GSMDRSILLW RTYGDCENYG ILNGHRGAIL DLQWSRDSKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCGAAA AAAGACCGGC ATCTGACGAG CCAGGCTCGG GCCAGATGAT CGTGAAGCGT 60
CAAAACGTGG GATCATCCAC GGGAGCACTG GCGAGGCTCA ATGGTTCCGG GAAGAGCAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071014--C:post-mRNA release spliceosomal complex
GO:0005682--C:U5 snRNP

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000138	Aegilops tauschii	46.58	9.00e-88	315.00
IUUC-Aml-001428	Ailuropoda melanoleuca	47.78	2.00e-85	306.00
IUUC-Atr-003164	Amborella trichopoda	46.25	1.00e-87	314.00
IUUC-Apl-003447	Anas platyrhynchos	47.92	2.00e-81	293.00
IUUC-Aca-004270	Anolis carolinensis	45.16	2.00e-85	306.00
IUUC-Aly-005659	Arabidopsis lyrata	46.91	2.00e-90	323.00
IUUC-Ath-006764	Arabidopsis thaliana	46.25	5.00e-89	319.00
IUUC-Acl-008324	Aspergillus clavatus	67.51	2.00e-146	509.00
IUUC-Afl-008607	Aspergillus flavus	71.48	7.00e-134	468.00
IUUC-Afu-008998	Aspergillus fumigatus	68.93	8.00e-149	518.00
IUUC-Ani-009363	Aspergillus nidulans	68.08	6.00e-149	518.00
IUUC-Ang-009513	Aspergillus niger	63.81	8.00e-131	457.00
IUUC-Aor-010237	Aspergillus oryzae	66.76	2.00e-145	506.00
IUUC-Ate-010374	Aspergillus terreus	63.66	3.00e-131	459.00
IUUC-Ame-010728	Astyanax mexicanus	48.22	1.00e-90	324.00
IUUC-Bgr-012297	Blumeria graminis	71.06	4.00e-116	408.00
IUUC-Bta-012433	Bos taurus	48.05	2.00e-90	323.00
IUUC-Bci-013763	Botrytis cinerea	76.27	7.00e-170	587.00
IUUC-Bdi-014490	Brachypodium distachyon	46.58	3.00e-88	316.00
IUUC-Bol-016479	Brassica oleracea	44.92	1.00e-91	327.00
IUUC-Bra-017219	Brassica rapa	41.87	1.00e-90	325.00
IUUC-Cel-018512	Caenorhabditis elegans	42.77	7.00e-82	295.00
IUUC-Cja-019308	Callithrix jacchus	47.90	8.00e-91	325.00
IUUC-Cfa-020998	Canis familiaris	48.22	3.00e-91	326.00
IUUC-Cpo-021580	Cavia porcellus	48.05	2.00e-90	323.00
IUUC-Cre-022859	Chlamydomonas reinhardtii	49.68	3.00e-90	323.00
IUUC-Csa-023456	Chlorocebus sabaeus	47.90	7.00e-91	325.00
IUUC-Cho-024644	Choloepus hoffmanni	48.22	3.00e-91	326.00
IUUC-Cin-025463	Ciona intestinalis	47.10	6.00e-86	308.00
IUUC-Cne-026780	Cryptococcus neoformans	46.18	4.00e-80	290.00
IUUC-Dre-027671	Danio rerio	48.54	9.00e-94	335.00
IUUC-Dno-029769	Dasypus novemcinctus	48.22	4.00e-91	326.00
IUUC-Dor-030776	Dipodomys ordii	48.03	3.00e-37	146.00
IUUC-Dse-031316	Dothistroma septosporum	61.02	2.00e-129	453.00
IUUC-Dme-031756	Drosophila melanogaster	42.54	7.00e-91	325.00
IUUC-Ete-032753	Echinops telfairi	44.48	6.00e-75	272.00
IUUC-Eca-033979	Equus caballus	48.05	2.00e-90	323.00
IUUC-Eeu-034862	Erinaceus europaeus	50.71	8.00e-37	145.00
IUUC-Fca-036110	Felis catus	48.64	5.00e-76	275.00
IUUC-Fal-037648	Ficedula albicollis	48.72	2.00e-91	327.00
IUUC-Fox-037861	Fusarium oxysporum	79.66	6.00e-170	588.00
IUUC-Fso-038405	Fusarium solani	80.51	1.00e-172	597.00
IUUC-Gmo-039383	Gadus morhua	45.37	6.00e-89	318.00
IUUC-Ggr-040082	Gaeumannomyces graminis	70.06	6.00e-152	528.00
IUUC-Gga-040785	Gallus gallus	48.57	6.00e-91	325.00
IUUC-Gac-041645	Gasterosteus aculeatus	46.93	3.00e-88	316.00
IUUC-Gma-043672	Glycine max	44.63	3.00e-86	310.00
IUUC-Ggo-044800	Gorilla gorilla	42.86	4.00e-69	253.00
IUUC-Hsa-045918	Homo sapiens	47.90	7.00e-91	325.00
IUUC-Hvu-047342	Hordeum vulgare	46.25	3.00e-87	313.00
IUUC-Itr-048047	Ictidomys tridecemlineatus	46.15	4.00e-49	185.00
IUUC-Kpa-049149	Komagataella pastoris	35.67	4.00e-44	169.00
IUUC-Lch-050395	Latimeria chalumnae	46.78	1.00e-95	341.00
IUUC-Lpe-051275	Leersia perrieri	46.58	4.00e-88	316.00
IUUC-Loc-052666	Lepisosteus oculatus	45.38	4.00e-88	316.00
IUUC-Lma-053129	Leptosphaeria maculans	62.82	5.00e-137	478.00
IUUC-Laf-054512	Loxodonta africana	48.05	2.00e-90	323.00
IUUC-Mcc-055819	Macaca mulatta	47.90	1.00e-90	325.00
IUUC-Meu-056350	Macropus eugenii	43.51	2.00e-73	267.00
IUUC-Mor-057063	Magnaporthe oryzae	74.86	8.00e-166	574.00
IUUC-Mpo-057369	Magnaporthe poae	69.77	1.00e-149	520.00
IUUC-Mtr-058228	Medicago truncatula	44.95	1.00e-86	311.00
IUUC-Mla-059093	Melampsora laricipopulina	43.17	6.00e-77	279.00
IUUC-Mga-059719	Meleagris gallopavo	48.73	7.00e-92	328.00
IUUC-Mvi-060285	Microbotryum violaceum	40.21	4.00e-71	259.00
IUUC-Mmr-061685	Microcebus murinus	45.95	7.00e-82	295.00
IUUC-Mdo-062121	Monodelphis domestica	48.70	4.00e-90	322.00
IUUC-Mmu-063216	Mus musculus	48.54	4.00e-91	326.00
IUUC-Mac-065463	Musa acuminata	43.65	9.00e-80	288.00
IUUC-Mpu-066390	Mustela putorius furo	48.22	4.00e-91	326.00
IUUC-Mlu-067686	Myotis lucifugus	45.95	5.00e-86	309.00
IUUC-Nfi-068509	Neosartorya fischeri	69.21	5.00e-149	518.00
IUUC-Ncr-068870	Neurospora crassa	77.68	2.00e-172	595.00
IUUC-Nle-069539	Nomascus leucogenys	47.90	9.00e-91	325.00
IUUC-Opr-070555	Ochotona princeps	41.23	2.00e-76	277.00
IUUC-Ont-071490	Oreochromis niloticus	47.80	4.00e-89	319.00
IUUC-Oan-073044	Ornithorhynchus anatinus	42.99	1.00e-69	254.00
IUUC-Ocu-073764	Oryctolagus cuniculus	48.22	4.00e-91	326.00
IUUC-Oba-075704	Oryza barthii	45.60	3.00e-87	313.00
IUUC-Obr-076455	Oryza brachyantha	45.93	3.00e-87	313.00
IUUC-Ogl-077382	Oryza glaberrima	45.28	7.00e-87	311.00
IUUC-Ogu-078739	Oryza glumaepatula	45.60	3.00e-87	313.00
IUUC-Oin-079072	Oryza indica	45.60	3.00e-87	313.00
IUUC-Olo-080809	Oryza longistaminata	45.60	3.00e-87	313.00
IUUC-Ome-081677	Oryza meridionalis	45.60	3.00e-87	313.00
IUUC-Oni-082937	Oryza nivara	45.60	3.00e-87	313.00
IUUC-Opu-083510	Oryza punctata	45.60	3.00e-87	313.00
IUUC-Oru-084360	Oryza rufipogon	45.60	4.00e-87	313.00
IUUC-Osa-085640	Oryza sativa	45.60	3.00e-87	313.00
IUUC-Ola-086504	Oryzias latipes	47.57	2.00e-89	320.00
IUUC-Olu-087869	Ostreococcus lucimarinus	36.72	4.00e-52	196.00
IUUC-Oga-088773	Otolemur garnettii	48.22	3.00e-91	326.00
IUUC-Oar-089677	Ovis aries	47.59	1.00e-88	318.00
IUUC-Ptr-090724	Pan troglodytes	47.96	2.00e-85	307.00
IUUC-Pan-092683	Papio anubis	47.90	7.00e-91	325.00
IUUC-Psi-093415	Pelodiscus sinensis	48.70	6.00e-90	322.00
IUUC-Pma-094562	Petromyzon marinus	47.90	9.00e-93	331.00
IUUC-Pno-095014	Phaeosphaeria nodorum	66.08	2.00e-140	490.00
IUUC-Ppa-095822	Physcomitrella patens	43.86	2.00e-88	317.00
IUUC-Pfo-096579	Poecilia formosa	47.57	3.00e-89	319.00
IUUC-Pab-098313	Pongo abelii	47.90	7.00e-91	325.00
IUUC-Pop-099747	Populus trichocarpa	45.93	7.00e-88	315.00
IUUC-Pca-100871	Procavia capensis	41.28	2.00e-62	230.00
IUUC-Ppe-101389	Prunus persica	43.97	4.00e-85	306.00
IUUC-Pva-102468	Pteropus vampyrus	39.29	1.00e-65	241.00
IUUC-Pgr-103523	Puccinia graminis	42.58	6.00e-83	299.00
IUUC-Ptt-103930	Puccinia triticina	42.31	7.00e-82	295.00
IUUC-Pte-104299	Pyrenophora teres	64.69	3.00e-141	493.00
IUUC-Pyt-104564	Pyrenophora triticirepentis	64.69	1.00e-141	494.00
IUUC-Rno-105796	Rattus norvegicus	48.22	8.00e-91	325.00
IUUC-Sha-107191	Sarcophilus harrisii	48.70	4.00e-90	322.00
IUUC-Sja-107952	Schizosaccharomyces japonicus	41.81	2.00e-73	267.00
IUUC-Spo-108249	Schizosaccharomyces pombe	49.84	1.00e-93	334.00
IUUC-Ssl-108448	Sclerotinia sclerotiorum	75.42	4.00e-169	585.00
IUUC-Sit-110805	Setaria italica	45.93	8.00e-87	311.00
IUUC-Sly-111567	Solanum lycopersicum	45.45	6.00e-89	318.00
IUUC-Stu-112562	Solanum tuberosum	45.45	2.00e-89	320.00
IUUC-Sar-112991	Sorex araneus	46.82	6.00e-59	218.00
IUUC-Sbi-114010	Sorghum bicolor	45.93	8.00e-87	311.00
IUUC-Sre-114947	Sporisorium reilianum	41.44	4.00e-76	276.00
IUUC-Ssc-115371	Sus scrofa	48.05	2.00e-90	323.00
IUUC-Tgu-117429	Taeniopygia guttata	47.08	1.00e-86	311.00
IUUC-Tru-118081	Takifugu rubripes	48.22	2.00e-90	324.00
IUUC-Tsy-119101	Tarsius syrichta	42.72	3.00e-74	270.00
IUUC-Tni-120532	Tetraodon nigroviridis	47.57	9.00e-90	321.00
IUUC-Tca-121373	Theobroma cacao	45.93	4.00e-87	312.00
IUUC-Tre-122050	Trichoderma reesei	77.59	2.00e-169	586.00
IUUC-Tvi-122394	Trichoderma virens	78.11	3.00e-163	565.00
IUUC-Tae-124661	Triticum aestivum	46.10	9.00e-86	308.00
IUUC-Tme-126998	Tuber melanosporum	65.18	2.00e-130	456.00
IUUC-Tbe-128032	Tupaia belangeri	48.22	3.00e-91	326.00
IUUC-Ttr-129102	Tursiops truncatus	48.44	1.00e-74	271.00
IUUC-Uma-129363	Ustilago maydis	42.06	4.00e-82	296.00
IUUC-Vda-129891	Verticillium dahliae	83.90	0.00e+00	641.00
IUUC-Vpa-130827	Vicugna pacos	47.73	5.00e-90	322.00
IUUC-Vvi-131202	Vitis vinifera	45.93	5.00e-88	315.00
IUUC-Xtr-132769	Xenopus tropicalis	47.21	8.00e-87	311.00
IUUC-Xma-133147	Xiphophorus maculatus	47.25	6.00e-89	318.00
IUUC-Yli-134352	Yarrowia lipolytica	34.75	5.00e-40	156.00
IUUC-Zma-135164	Zea mays	46.25	3.00e-87	313.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence