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Tag Content
UUCD2 ID IUUC-Cho-024549
UUCD1 version UUC-ChH-00200
Ensembl Protein ID ENSCHOP00000010344.1
UniProt Accession Q6X874; Q6X874_CHOHO
Genbank Protein ID AAQ57548.1
Protein Name Recombination activating protein 1
Genbank Nucleotide ID AY249885
Gene Name RAG1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCHOG00000011701.1 ENSCHOT00000011741.1 ENSCHOP00000010344.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/U-box 4.10e-07 29.3 212 259
E3 activity/RING/RING 8.50e-07 28.8 216 254
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box
   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplte 52
           ++f C++ + l+ +Pv++p+G+++ ++++e++l++    cP+++++l+e
   Q: 212  SDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHTPY-CPLCKESLKE 259
           68***********************************9.*******986 PP
   

   E3 activity/RING/RING
   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C+  f++ p+++pCgH f+++Cl++          + +CPlC+
   Q: 216  CSLCMRLFFE-PVTTPCGHSFCKNCLERC------LDHTPYCPLCK 254
           **********.9**************999......9*********7 PP
   
Organism Choloepus hoffmanni
Protein Sequence
(Fasta)
PSDLTLKIYR AESYAGLQEF KAAIEDLNAV LAQLPNWPET VSSCLALDED FAPAKLEVEK 60
ILCDLLSPEN LKEGLKESSW TSLPCVKNKA LGFPSVMEES HSPSELSPEQ FKVEVTSEPV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cho-024549|E3,U-box;E3,RING|Choloepus hoffmanni
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCCAGCGACT TGACCCTAAA AATTTACAGA GCTGAATCGT ATGCTGGTCT CCAAGAGTTT 60
AAAGCAGCCA TAGAAGATTT AAATGCAGTT CTTGCTCAAC TTCCAAATTG GCCTGAGGTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cho-024549|E3,U-box;E3,RING|Choloepus hoffmanni
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0539--Nucleus
Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR013087--Znf_C2H2_type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF12940--RAG1
PF10426--zf-RAG1
SMART

SM00184--RING
Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0033151--P:V(D)J recombination
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001989 Ailuropoda melanoleuca 83.27 0.00e+00 856.00
IUUC-Atr-002972 Amborella trichopoda 41.26 2.00e-43 169.00
IUUC-Apl-003309 Anas platyrhynchos 73.01 1.00e-165 574.00
IUUC-Aca-004288 Anolis carolinensis 64.41 0.00e+00 654.00
IUUC-Aly-005476 Arabidopsis lyrata 36.47 5.00e-40 158.00
IUUC-Ath-006654 Arabidopsis thaliana 36.47 3.00e-40 159.00
IUUC-Acl-008224 Aspergillus clavatus 31.97 2.00e-36 146.00
IUUC-Afu-008802 Aspergillus fumigatus 29.58 7.00e-33 134.00
IUUC-Ani-009473 Aspergillus nidulans 35.71 2.00e-39 156.00
IUUC-Ang-009643 Aspergillus niger 31.89 2.00e-37 150.00
IUUC-Ate-010489 Aspergillus terreus 34.30 2.00e-35 143.00
IUUC-Ame-010716 Astyanax mexicanus 49.17 2.00e-135 475.00
IUUC-Bta-012903 Bos taurus 83.27 0.00e+00 882.00
IUUC-Bdi-014333 Brachypodium distachyon 42.51 2.00e-42 166.00
IUUC-Bol-016150 Brassica oleracea 37.39 1.00e-40 160.00
IUUC-Bra-016716 Brassica rapa 35.66 7.00e-38 150.00
IUUC-Cel-018356 Caenorhabditis elegans 33.33 4.00e-09 53.50
IUUC-Cja-019312 Callithrix jacchus 83.65 0.00e+00 877.00
IUUC-Cfa-020159 Canis familiaris 84.02 0.00e+00 883.00
IUUC-Cpo-022528 Cavia porcellus 81.17 0.00e+00 822.00
IUUC-Cre-022730 Chlamydomonas reinhardtii 72.00 3.00e-08 51.60
IUUC-Csa-023361 Chlorocebus sabaeus 83.65 0.00e+00 828.00
IUUC-Cin-025668 Ciona intestinalis 45.20 1.00e-63 236.00
IUUC-Csv-026364 Ciona savignyi 45.60 3.00e-64 238.00
IUUC-Cgl-026514 Colletotrichum gloeosporioides 37.91 6.00e-43 167.00
IUUC-Cme-027153 Cyanidioschyzon merolae 29.71 4.00e-29 121.00
IUUC-Dre-028195 Danio rerio 48.99 2.00e-136 479.00
IUUC-Dno-029284 Dasypus novemcinctus 83.83 0.00e+00 883.00
IUUC-Dor-031123 Dipodomys ordii 73.05 0.00e+00 641.00
IUUC-Dse-031331 Dothistroma septosporum 35.29 5.00e-34 138.00
IUUC-Dme-031919 Drosophila melanogaster 37.07 6.00e-54 205.00
IUUC-Ete-032455 Echinops telfairi 84.63 0.00e+00 678.00
IUUC-Eca-033248 Equus caballus 88.66 0.00e+00 691.00
IUUC-Eeu-034441 Erinaceus europaeus 85.82 0.00e+00 717.00
IUUC-Fca-035551 Felis catus 83.65 0.00e+00 883.00
IUUC-Fal-036731 Ficedula albicollis 68.25 0.00e+00 699.00
IUUC-Fso-038334 Fusarium solani 36.54 8.00e-40 157.00
IUUC-Gmo-039315 Gadus morhua 46.65 6.00e-123 434.00
IUUC-Gga-040888 Gallus gallus 73.80 3.00e-175 607.00
IUUC-Gac-042121 Gasterosteus aculeatus 51.43 7.00e-135 473.00
IUUC-Gma-042919 Glycine max 39.18 1.00e-35 143.00
IUUC-Ggo-044985 Gorilla gorilla 83.65 0.00e+00 880.00
IUUC-Hsa-046592 Homo sapiens 83.46 0.00e+00 875.00
IUUC-Hvu-047145 Hordeum vulgare 41.32 2.00e-24 105.00
IUUC-Itr-048573 Ictidomys tridecemlineatus 83.83 0.00e+00 884.00
IUUC-Lch-050404 Latimeria chalumnae 58.36 9.00e-160 556.00
IUUC-Loc-051922 Lepisosteus oculatus 42.01 2.00e-112 399.00
IUUC-Lma-053145 Leptosphaeria maculans 38.71 1.00e-39 157.00
IUUC-Laf-053431 Loxodonta africana 82.33 0.00e+00 863.00
IUUC-Mcc-055751 Macaca mulatta 81.20 0.00e+00 793.00
IUUC-Meu-055901 Macropus eugenii 38.33 3.00e-79 288.00
IUUC-Mor-056963 Magnaporthe oryzae 41.71 1.00e-41 163.00
IUUC-Mtr-058075 Medicago truncatula 36.96 2.00e-40 159.00
IUUC-Mla-058946 Melampsora laricipopulina 36.86 2.00e-42 166.00
IUUC-Mga-059472 Meleagris gallopavo 84.23 2.00e-137 480.00
IUUC-Mvi-060228 Microbotryum violaceum 38.32 2.00e-44 174.00
IUUC-Mmr-061283 Microcebus murinus 84.59 0.00e+00 890.00
IUUC-Mdo-062203 Monodelphis domestica 45.95 1.00e-112 400.00
IUUC-Mmu-063169 Mus musculus 80.11 0.00e+00 835.00
IUUC-Mac-065566 Musa acuminata 38.10 5.00e-44 171.00
IUUC-Mpu-066537 Mustela putorius furo 83.65 0.00e+00 858.00
IUUC-Mlu-067497 Myotis lucifugus 82.89 0.00e+00 870.00
IUUC-Nfi-068337 Neosartorya fischeri 30.52 1.00e-34 140.00
IUUC-Nle-068971 Nomascus leucogenys 83.65 0.00e+00 848.00
IUUC-Opr-070791 Ochotona princeps 85.29 0.00e+00 800.00
IUUC-Ont-071548 Oreochromis niloticus 52.15 5.00e-142 497.00
IUUC-Oan-072747 Ornithorhynchus anatinus 78.09 9.00e-180 622.00
IUUC-Ocu-074928 Oryctolagus cuniculus 87.88 0.00e+00 701.00
IUUC-Oba-075239 Oryza barthii 41.55 5.00e-42 164.00
IUUC-Obr-076158 Oryza brachyantha 41.18 2.00e-44 172.00
IUUC-Ogu-078154 Oryza glumaepatula 42.03 2.00e-42 166.00
IUUC-Oin-079067 Oryza indica 38.70 3.00e-42 166.00
IUUC-Olo-080663 Oryza longistaminata 41.55 6.00e-42 164.00
IUUC-Oni-082119 Oryza nivara 38.70 2.00e-42 165.00
IUUC-Opu-083266 Oryza punctata 36.23 3.00e-31 129.00
IUUC-Oru-085190 Oryza rufipogon 41.55 7.00e-42 164.00
IUUC-Ola-086977 Oryzias latipes 51.89 9.00e-142 496.00
IUUC-Oga-088719 Otolemur garnettii 83.65 0.00e+00 856.00
IUUC-Oar-089577 Ovis aries 83.27 0.00e+00 883.00
IUUC-Ptr-090711 Pan troglodytes 83.65 0.00e+00 879.00
IUUC-Pan-092587 Papio anubis 83.27 0.00e+00 857.00
IUUC-Psi-093128 Pelodiscus sinensis 69.36 0.00e+00 713.00
IUUC-Pma-094231 Petromyzon marinus 64.56 6.00e-93 332.00
IUUC-Pno-094889 Phaeosphaeria nodorum 36.67 3.00e-40 158.00
IUUC-Ppa-095462 Physcomitrella patens 33.75 8.00e-09 54.30
IUUC-Pfo-096474 Poecilia formosa 50.47 2.00e-139 489.00
IUUC-Pab-097800 Pongo abelii 81.95 0.00e+00 853.00
IUUC-Pop-100044 Populus trichocarpa 37.55 5.00e-42 164.00
IUUC-Pca-100905 Procavia capensis 63.32 4.00e-79 288.00
IUUC-Ppe-101621 Prunus persica 38.46 3.00e-36 145.00
IUUC-Pva-102242 Pteropus vampyrus 56.21 6.00e-88 318.00
IUUC-Pgr-103289 Puccinia graminis 28.89 5.00e-24 105.00
IUUC-Ptt-103898 Puccinia triticina 30.26 1.00e-25 110.00
IUUC-Pte-104214 Pyrenophora teres 36.32 3.00e-38 152.00
IUUC-Pyt-104565 Pyrenophora triticirepentis 36.32 3.00e-38 152.00
IUUC-Rno-105718 Rattus norvegicus 80.64 0.00e+00 836.00
IUUC-Sha-107565 Sarcophilus harrisii 59.77 5.00e-91 328.00
IUUC-Sja-107742 Schizosaccharomyces japonicus 33.66 5.00e-28 118.00
IUUC-Spo-108344 Schizosaccharomyces pombe 31.11 1.00e-21 97.40
IUUC-Sit-110495 Setaria italica 38.05 3.00e-41 162.00
IUUC-Sly-111396 Solanum lycopersicum 35.77 8.00e-40 157.00
IUUC-Sar-113220 Sorex araneus 82.78 0.00e+00 651.00
IUUC-Sbi-114779 Sorghum bicolor 37.71 7.00e-29 120.00
IUUC-Sre-114977 Sporisorium reilianum 32.20 3.00e-35 143.00
IUUC-Ssc-115733 Sus scrofa 83.27 0.00e+00 879.00
IUUC-Tgu-117431 Taeniopygia guttata 64.65 0.00e+00 654.00
IUUC-Tru-118274 Takifugu rubripes 51.21 1.00e-137 483.00
IUUC-Tsy-119043 Tarsius syrichta 83.27 0.00e+00 845.00
IUUC-Tni-120766 Tetraodon nigroviridis 47.13 7.00e-124 437.00
IUUC-Tca-121632 Theobroma cacao 35.84 3.00e-42 165.00
IUUC-Tae-124676 Triticum aestivum 41.06 7.00e-42 164.00
IUUC-Tur-126297 Triticum urartu 40.74 4.00e-32 132.00
IUUC-Tme-127112 Tuber melanosporum 40.65 5.00e-45 174.00
IUUC-Tbe-127284 Tupaia belangeri 83.65 0.00e+00 689.00
IUUC-Ttr-128666 Tursiops truncatus 47.02 7.00e-101 360.00
IUUC-Uma-129541 Ustilago maydis 44.80 4.00e-28 120.00
IUUC-Vda-129721 Verticillium dahliae 34.01 2.00e-35 142.00
IUUC-Vpa-130408 Vicugna pacos 79.51 0.00e+00 805.00
IUUC-Vvi-130910 Vitis vinifera 34.80 1.00e-36 146.00
IUUC-Xtr-132417 Xenopus tropicalis 58.61 5.00e-163 567.00
IUUC-Xma-134099 Xiphophorus maculatus 50.09 4.00e-140 491.00
IUUC-Zma-135914 Zea mays 39.84 1.00e-24 107.00
Created Date 25-Jun-2017

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