iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007476

Ensembl Protein ID

AT4G00090.1

UniProt Accession

Q93ZN5; Q93ZN5_ARATH

Genbank Protein ID

AAL08292.1; AAN28910.1; AEE81822.1

Protein Name

AT4g00090/F6N15_8; At4g00090/F6N15_8; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

AY056436; AY143971; CP002687

Gene Name

At4g00090; F6N15.8; F6N15_8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G00090	AT4G00090.1	AT4G00090.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.90e-18	65.4	84	117

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           gH d vt+l+f sd + l++++ Dg+i+v+ l++
   Q: 84   GHGDAVTGLCFsSDgKSLATACADGVIRVFKLDD 117
           8***********999***************9977 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDSVLVVGIA SVILGALIAV LFFGSYFRKR TSEVQSMAKA EPQDPIRNPK SNHPAPKKNH 60
PKSQASDKNQ NKRHHPLDLN TLKGHGDAVT GLCFSSDGKS LATACADGVI RVFKLDDASS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGGAGAT CACTCTCCTC TCCATAAGCT AAGCTCTAGA AACACCGCCT TTAACGTCTC 60
GCTGCACCAT TTTTCATCGT TGATCAGTCG TCGATCCTCT TGAGTGATTT GATTTTAGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0016021--C:integral component of membrane

KEGG

ath:AT4G00090

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000109	Aegilops tauschii	65.02	2.00e-72	263.00
IUUC-Aml-002212	Ailuropoda melanoleuca	30.35	8.00e-39	154.00
IUUC-Atr-002903	Amborella trichopoda	68.22	7.00e-177	612.00
IUUC-Apl-003635	Anas platyrhynchos	32.99	1.00e-37	149.00
IUUC-Aca-004472	Anolis carolinensis	34.42	2.00e-37	149.00
IUUC-Aly-005761	Arabidopsis lyrata	97.12	0.00e+00	845.00
IUUC-Ame-011221	Astyanax mexicanus	32.15	2.00e-43	169.00
IUUC-Bta-013186	Bos taurus	30.89	6.00e-38	150.00
IUUC-Bdi-014298	Brachypodium distachyon	68.72	4.00e-145	506.00
IUUC-Bol-015192	Brassica oleracea	87.67	0.00e+00	770.00
IUUC-Bra-017078	Brassica rapa	88.14	0.00e+00	776.00
IUUC-Cel-018602	Caenorhabditis elegans	26.65	7.00e-28	117.00
IUUC-Cja-018909	Callithrix jacchus	32.37	1.00e-36	146.00
IUUC-Cfa-020970	Canis familiaris	31.55	2.00e-39	155.00
IUUC-Cpo-022215	Cavia porcellus	31.15	9.00e-38	150.00
IUUC-Cre-022949	Chlamydomonas reinhardtii	40.11	1.00e-34	138.00
IUUC-Csa-023530	Chlorocebus sabaeus	31.44	1.00e-39	156.00
IUUC-Cho-024598	Choloepus hoffmanni	31.85	6.00e-27	114.00
IUUC-Cin-025486	Ciona intestinalis	27.27	8.00e-31	127.00
IUUC-Csv-025930	Ciona savignyi	24.86	3.00e-22	99.00
IUUC-Dre-027507	Danio rerio	33.75	7.00e-43	167.00
IUUC-Dno-029726	Dasypus novemcinctus	30.46	3.00e-37	148.00
IUUC-Dor-030501	Dipodomys ordii	34.05	7.00e-28	117.00
IUUC-Ete-032794	Echinops telfairi	34.90	1.00e-28	119.00
IUUC-Eca-033982	Equus caballus	32.00	5.00e-37	148.00
IUUC-Eeu-035090	Erinaceus europaeus	35.52	3.00e-29	122.00
IUUC-Fca-035944	Felis catus	30.30	2.00e-40	159.00
IUUC-Fal-036992	Ficedula albicollis	31.29	1.00e-34	139.00
IUUC-Gmo-038710	Gadus morhua	31.37	6.00e-42	164.00
IUUC-Gga-040885	Gallus gallus	36.36	1.00e-27	116.00
IUUC-Gac-041922	Gasterosteus aculeatus	33.13	7.00e-43	167.00
IUUC-Gma-044233	Glycine max	74.81	1.00e-178	618.00
IUUC-Ggo-045172	Gorilla gorilla	32.42	7.00e-39	154.00
IUUC-Hsa-045711	Homo sapiens	32.42	7.00e-39	154.00
IUUC-Itr-048196	Ictidomys tridecemlineatus	30.89	1.00e-37	149.00
IUUC-Lch-049739	Latimeria chalumnae	30.68	3.00e-40	158.00
IUUC-Lpe-050795	Leersia perrieri	56.26	4.00e-121	427.00
IUUC-Loc-052113	Lepisosteus oculatus	32.65	7.00e-38	150.00
IUUC-Laf-053751	Loxodonta africana	31.27	1.00e-40	160.00
IUUC-Mcc-055022	Macaca mulatta	32.11	2.00e-39	155.00
IUUC-Meu-056003	Macropus eugenii	30.06	3.00e-35	142.00
IUUC-Mtr-058500	Medicago truncatula	73.46	9.00e-175	605.00
IUUC-Mga-059278	Meleagris gallopavo	33.33	3.00e-28	118.00
IUUC-Mmr-061148	Microcebus murinus	32.14	6.00e-40	157.00
IUUC-Mdo-063002	Monodelphis domestica	30.16	2.00e-31	129.00
IUUC-Mmu-063607	Mus musculus	29.38	7.00e-37	147.00
IUUC-Mac-065359	Musa acuminata	64.99	1.00e-166	578.00
IUUC-Mpu-066323	Mustela putorius furo	31.66	6.00e-38	150.00
IUUC-Mlu-067946	Myotis lucifugus	31.80	8.00e-40	157.00
IUUC-Nle-069019	Nomascus leucogenys	32.42	8.00e-39	154.00
IUUC-Opr-071047	Ochotona princeps	29.51	1.00e-38	153.00
IUUC-Ont-071694	Oreochromis niloticus	34.16	7.00e-42	164.00
IUUC-Ocu-074493	Oryctolagus cuniculus	31.56	7.00e-37	147.00
IUUC-Oba-075468	Oryza barthii	63.77	2.00e-143	501.00
IUUC-Obr-076681	Oryza brachyantha	68.72	2.00e-136	478.00
IUUC-Ogl-077870	Oryza glaberrima	63.77	2.00e-143	501.00
IUUC-Ogu-078536	Oryza glumaepatula	63.77	3.00e-143	501.00
IUUC-Oin-080175	Oryza indica	63.77	2.00e-143	501.00
IUUC-Olo-080796	Oryza longistaminata	66.84	3.00e-138	484.00
IUUC-Oni-082076	Oryza nivara	63.77	2.00e-143	501.00
IUUC-Opu-083267	Oryza punctata	67.27	7.00e-143	499.00
IUUC-Oru-084553	Oryza rufipogon	63.77	2.00e-143	501.00
IUUC-Osa-085389	Oryza sativa	63.77	2.00e-143	501.00
IUUC-Ola-086414	Oryzias latipes	35.02	1.00e-44	173.00
IUUC-Oga-088656	Otolemur garnettii	31.55	6.00e-38	150.00
IUUC-Oar-089719	Ovis aries	30.98	3.00e-37	148.00
IUUC-Ptr-091087	Pan troglodytes	32.42	8.00e-39	154.00
IUUC-Pan-091709	Papio anubis	32.11	2.00e-39	155.00
IUUC-Psi-093265	Pelodiscus sinensis	30.00	2.00e-36	145.00
IUUC-Ppa-095365	Physcomitrella patens	56.92	2.00e-128	451.00
IUUC-Pfo-097494	Poecilia formosa	33.85	7.00e-43	167.00
IUUC-Pab-098362	Pongo abelii	32.72	2.00e-39	156.00
IUUC-Pop-099474	Populus trichocarpa	70.45	3.00e-170	590.00
IUUC-Pca-101019	Procavia capensis	36.27	1.00e-30	126.00
IUUC-Ppe-102101	Prunus persica	73.21	0.00e+00	664.00
IUUC-Pva-102849	Pteropus vampyrus	32.71	2.00e-39	155.00
IUUC-Rno-105511	Rattus norvegicus	30.19	1.00e-36	146.00
IUUC-Sha-107265	Sarcophilus harrisii	29.67	6.00e-35	141.00
IUUC-Smo-108866	Selaginella moellendorffii	56.82	2.00e-119	421.00
IUUC-Sit-110806	Setaria italica	61.87	5.00e-149	520.00
IUUC-Sly-110994	Solanum lycopersicum	68.12	4.00e-174	603.00
IUUC-Stu-112493	Solanum tuberosum	71.64	8.00e-119	419.00
IUUC-Sar-113628	Sorex araneus	32.89	2.00e-37	149.00
IUUC-Sbi-114397	Sorghum bicolor	60.52	9.00e-147	512.00
IUUC-Ssc-116418	Sus scrofa	30.58	1.00e-39	157.00
IUUC-Tgu-117054	Taeniopygia guttata	31.60	2.00e-37	149.00
IUUC-Tru-118504	Takifugu rubripes	31.42	1.00e-44	172.00
IUUC-Tni-120254	Tetraodon nigroviridis	31.97	3.00e-45	175.00
IUUC-Tca-121085	Theobroma cacao	73.98	0.00e+00	625.00
IUUC-Tae-124351	Triticum aestivum	67.04	3.00e-142	497.00
IUUC-Tur-126756	Triticum urartu	60.86	2.00e-125	441.00
IUUC-Tbe-127903	Tupaia belangeri	31.78	1.00e-37	149.00
IUUC-Ttr-129118	Tursiops truncatus	30.35	5.00e-41	161.00
IUUC-Vvi-131125	Vitis vinifera	69.59	0.00e+00	625.00
IUUC-Xtr-132287	Xenopus tropicalis	32.91	5.00e-39	154.00
IUUC-Xma-134246	Xiphophorus maculatus	34.16	2.00e-43	169.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence