iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114207

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G119700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g009980	Sb04g009980.1	Sb04g009980.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.20e-26	89.6	280	311
E3 adaptor/Cullin RING/APC_C/CDC20	8.70e-125	416.8	145	454

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDl 30
           gH+ +v++l++  s+  l+sG++D+ +++WD+
   Q: 280  GHSQEVCGLKWsgSGQQLASGGNDNLLHIWDV 311
           8**********976699**************8 PP

E3 adaptor/Cullin RING/APC_C/CDC20

   S: 2    ekvldapelrddfylnLldWssknvlavaLgssvylwsaktgdvskladl.eekdlvtsvswieegtllavGtkkgeveiyDveekkkvrtl.tgh 95
           e+ ldapel dd+ylnLldW+s+nvl++aLg +vylw+a+tg+ s+l  + e++  +tsvsw ++g+++avG +++ v+++D+++++ +rtl   h
   Q: 145  ERTLDAPELVDDYYLNLLDWGSNNVLSIALGDTVYLWDASTGSTSELVTIdEDSGPITSVSWAPDGKHIAVGLNSSDVQLWDTSSNRLLRTLrGVH 240
           689***********************************************777889************************************5559 PP
   S: 96   sarvgaLsWnaevlssGsrdgeilhrdvrvkelklstlqahaqevCGlkwnedaklLasGGnDnsvsvwdassse.........Plkkfkehkaav 182
            arvg+L+Wn+ +l++G+ dg+i+ +dvr++++ ++t+++h+qevCGlkw+ ++++LasGGnDn +++wd s  +          l++ ++h+aav
   Q: 241  EARVGSLAWNNSILTTGGMDGKIVNNDVRIRNHVVQTYEGHSQEVCGLKWSGSGQQLASGGNDNLLHIWDVSMASsmpsagrnqWLHRLEDHTAAV 336
           9*********************************************************************98777676666666688999****** PP
   S: 183  kaiawsPwqkslLasGGGtaDrcikfwntltgalleeidtgsqvcsllwskkskelvsthGfaenkitlwkypslskvaelkgheaRvlslalspd 278
           ka+aw+P+q++lLa+GGG +Drcikfwnt tga+l+++dtgsqvc llw k+++el+s+hGf++n++tlwkyps+ k+ael+gh++Rvl +a spd
   Q: 337  KALAWCPFQSNLLATGGGGSDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLFMAQSPD 432
           ************************************************************************************************ PP
   S: 279  geaivtaagDetlrfwklfdkk 300
           g ++++aa+Detlrfw++f   
   Q: 433  GCTVASAAADETLRFWNVFGAP 454
           *******************765 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDAGTYSISS EKSHKAAKAA AAPRPPLQEA GSQPYMPSLS TGSRNPSAKC YGDRFIPDRS 60
AMDMDVAQYL LTEPRKDKEN AAAAASPSKE MYRRLLAEKL LNNRTRILAF RNKPPEPENV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCACGCCG ATCTCGATCG AGCACCTGGG GAGACCACGA GACGCGCGCC CTGCTTCGCT 60
TCCCGCATCA CAGCTCTCAA GTTCTCTGCC TCTCTTTTTT TTTTCAGTTT TTCAAGTAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR033010--Cdc20/Fizzy
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0097027--F:ubiquitin-protein transferase activator activity
GO:1904668--P:positive regulation of ubiquitin protein ligase activity

KEGG

sbi:SORBI_04g009980

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002628	Amborella trichopoda	70.57	2.00e-175	607.00
IUUC-Cho-024920	Choloepus hoffmanni	65.77	7.00e-43	167.00
IUUC-Cin-025675	Ciona intestinalis	47.32	2.00e-108	385.00
IUUC-Csv-026019	Ciona savignyi	45.89	1.00e-100	359.00
IUUC-Cne-026872	Cryptococcus neoformans	40.05	3.00e-88	318.00
IUUC-Cme-027234	Cyanidioschyzon merolae	49.61	4.00e-103	367.00
IUUC-Dre-028026	Danio rerio	42.49	3.00e-101	361.00
IUUC-Gmo-039284	Gadus morhua	43.66	3.00e-100	357.00
IUUC-Loc-052638	Lepisosteus oculatus	43.41	7.00e-91	327.00
IUUC-Mlu-067277	Myotis lucifugus	48.19	3.00e-104	371.00
IUUC-Pma-094187	Petromyzon marinus	45.77	3.00e-101	361.00
IUUC-Ppa-095687	Physcomitrella patens	66.06	1.00e-156	545.00
IUUC-Sja-107919	Schizosaccharomyces japonicus	44.50	9.00e-93	333.00
IUUC-Spo-108075	Schizosaccharomyces pombe	42.28	5.00e-91	327.00
IUUC-Tni-120474	Tetraodon nigroviridis	45.26	2.00e-93	335.00
IUUC-Tme-126905	Tuber melanosporum	49.60	3.00e-96	345.00
IUUC-Xtr-131993	Xenopus tropicalis	49.27	6.00e-110	390.00
IUUC-Xma-133332	Xiphophorus maculatus	45.69	1.00e-98	352.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence