iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022979

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

DS496138

Gene Name

CHLREDRAFT_119935

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_119935	EDP00677	EDP00677

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-46	153.0	365	402
UBD/Beta-Prp	2.20e-67	226.8	323	531

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHtd+v+++++ ++ + l+s+sdD t kvW+l+++++ 
   Q: 365  GHTDEVNAIRWdPSgRWLASCSDDRTAKVWSLSSDKPA 402
           8***********66699***************999875 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp... 104
           + h+++  +v++ ++++ +a+ s+d+ i v ++ +  +++++ gh++ev+a++++p+g +l+++s+Drt+kvw+ls+ k+ h +++he++++++++sp   
   Q: 323  AMHTAPTLDVDW-RNNTSFASCSTDKLIHVCKLGEHGAVKTFTGHTDEVNAIRWDPSGRWLASCSDDRTAKVWSLSSDKPAHDFREHEREIYTIRWSPtgt 422
           568888889999.66666********************************************************************************765 PP
   S: 105  .....sg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
                +    l+s+s d+t+r+wd+e g cl+  l++h++ v +v+++p+g+l+++Gs Dr + +W+   g+l++ ++g     +y + +d++g +++++ 
   Q: 423  gtanpNLpLLLASASFDKTVRLWDVEVGRCLH-KLAKHSEPVYSVAFSPNGKLVATGSFDRWMYIWSAVDGSLIKSFKG--SAGIYEVCWDHEGDRVAACF 520
           55444343479*********************.********************************************99..99****************** PP
   S: 200  ldgtvklwdlq 210
            ++tv ++d++
   Q: 521  ANKTVCVVDIR 531
           *********97 PP

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

MSSFTLTSDV VNYLIYRYLQ EAGFTHSAFT FASESLVSRT NIDPNNVPPG SLVTFIQKGL 60
QYLEIEANLD APVRPLGTAS ALELLSNDAA QAQAAAQAQT AALPAAAAAA AAAAAAAAQP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGCTCCT TTACGCTCAC GAGCGACGTT GTCAACTATC TCATATATCG CTACTTACAA 60
GAGGCTGGTG AGTATGCTGC TAAAGCACCG GGCGCAATTT TGGCGGGCTC TGGAGTCTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0009409--P:response to cold

KEGG

cre:CHLREDRAFT_119935

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	58.87	2.00e-52	196.00
IUUC-Aml-001450	Ailuropoda melanoleuca	61.43	6.00e-138	482.00
IUUC-Atr-002514	Amborella trichopoda	63.41	2.00e-139	487.00
IUUC-Apl-003232	Anas platyrhynchos	60.88	3.00e-137	480.00
IUUC-Aca-005035	Anolis carolinensis	52.99	3.00e-155	540.00
IUUC-Aly-005622	Arabidopsis lyrata	57.38	4.00e-116	410.00
IUUC-Ath-007137	Arabidopsis thaliana	57.92	3.00e-117	414.00
IUUC-Ago-007869	Ashbya gossypii	29.32	4.00e-33	134.00
IUUC-Ame-011601	Astyanax mexicanus	60.93	1.00e-131	461.00
IUUC-Bta-013202	Bos taurus	55.81	2.00e-157	547.00
IUUC-Bdi-014315	Brachypodium distachyon	60.33	7.00e-131	458.00
IUUC-Bol-016277	Brassica oleracea	57.18	2.00e-119	421.00
IUUC-Bra-016944	Brassica rapa	57.18	1.00e-119	421.00
IUUC-Cja-019281	Callithrix jacchus	60.61	6.00e-138	482.00
IUUC-Cfa-020929	Canis familiaris	53.67	3.00e-155	539.00
IUUC-Cpo-021682	Cavia porcellus	61.71	5.00e-138	482.00
IUUC-Csa-024075	Chlorocebus sabaeus	60.38	9.00e-131	458.00
IUUC-Cin-025704	Ciona intestinalis	59.09	4.00e-133	466.00
IUUC-Csv-026257	Ciona savignyi	59.23	1.00e-130	458.00
IUUC-Cne-026946	Cryptococcus neoformans	34.39	3.00e-29	122.00
IUUC-Cme-027258	Cyanidioschyzon merolae	40.38	8.00e-81	292.00
IUUC-Dre-027906	Danio rerio	61.31	4.00e-132	462.00
IUUC-Dno-029196	Dasypus novemcinctus	60.38	6.00e-131	459.00
IUUC-Dor-030732	Dipodomys ordii	60.17	3.00e-126	443.00
IUUC-Dme-031939	Drosophila melanogaster	60.38	1.00e-126	445.00
IUUC-Ete-033150	Echinops telfairi	60.06	3.00e-112	396.00
IUUC-Eca-033897	Equus caballus	53.48	3.00e-155	540.00
IUUC-Eeu-034952	Erinaceus europaeus	53.20	4.00e-109	386.00
IUUC-Fca-036462	Felis catus	61.43	8.00e-138	481.00
IUUC-Fal-037388	Ficedula albicollis	61.16	5.00e-138	482.00
IUUC-Gmo-038870	Gadus morhua	60.49	4.00e-134	469.00
IUUC-Gga-040671	Gallus gallus	61.16	5.00e-138	482.00
IUUC-Gac-041844	Gasterosteus aculeatus	60.38	8.00e-137	478.00
IUUC-Gma-044208	Glycine max	61.92	5.00e-138	482.00
IUUC-Ggo-044882	Gorilla gorilla	60.38	9.00e-131	458.00
IUUC-Hsa-046488	Homo sapiens	60.38	9.00e-131	458.00
IUUC-Itr-048236	Ictidomys tridecemlineatus	61.43	7.00e-137	478.00
IUUC-Kpa-049338	Komagataella pastoris	28.21	4.00e-31	127.00
IUUC-Lch-050535	Latimeria chalumnae	60.93	2.00e-137	480.00
IUUC-Lpe-051084	Leersia perrieri	59.56	1.00e-129	454.00
IUUC-Loc-052722	Lepisosteus oculatus	61.75	1.00e-138	485.00
IUUC-Laf-054071	Loxodonta africana	60.88	6.00e-137	479.00
IUUC-Mcc-055203	Macaca mulatta	60.38	1.00e-130	458.00
IUUC-Meu-056563	Macropus eugenii	66.81	1.00e-91	328.00
IUUC-Mtr-058624	Medicago truncatula	59.28	2.00e-127	447.00
IUUC-Mga-059895	Meleagris gallopavo	61.16	5.00e-138	482.00
IUUC-Mvi-060557	Microbotryum violaceum	39.58	5.00e-71	260.00
IUUC-Mmr-061286	Microcebus murinus	61.43	4.00e-138	483.00
IUUC-Mdo-062078	Monodelphis domestica	60.11	2.00e-130	457.00
IUUC-Mmu-063447	Mus musculus	61.71	3.00e-138	483.00
IUUC-Mac-065508	Musa acuminata	62.31	3.00e-91	327.00
IUUC-Mpu-066741	Mustela putorius furo	60.38	9.00e-131	458.00
IUUC-Mlu-067852	Myotis lucifugus	62.09	8.00e-138	481.00
IUUC-Nle-069229	Nomascus leucogenys	60.38	9.00e-131	458.00
IUUC-Opr-070277	Ochotona princeps	49.03	3.00e-95	340.00
IUUC-Ont-071569	Oreochromis niloticus	61.31	1.00e-137	481.00
IUUC-Oan-073562	Ornithorhynchus anatinus	61.43	2.00e-138	483.00
IUUC-Ocu-074280	Oryctolagus cuniculus	60.38	6.00e-131	459.00
IUUC-Oba-075618	Oryza barthii	57.65	5.00e-120	422.00
IUUC-Obr-076718	Oryza brachyantha	60.11	2.00e-130	457.00
IUUC-Ogl-077302	Oryza glaberrima	59.84	7.00e-130	455.00
IUUC-Ogu-078718	Oryza glumaepatula	59.84	6.00e-130	455.00
IUUC-Oin-079515	Oryza indica	52.49	1.00e-71	263.00
IUUC-Olo-080427	Oryza longistaminata	60.40	9.00e-125	439.00
IUUC-Ome-081696	Oryza meridionalis	58.47	7.00e-125	439.00
IUUC-Oni-082137	Oryza nivara	59.84	6.00e-130	455.00
IUUC-Opu-083505	Oryza punctata	57.92	9.00e-121	425.00
IUUC-Oru-085276	Oryza rufipogon	59.84	4.00e-130	456.00
IUUC-Osa-085791	Oryza sativa	59.84	6.00e-130	455.00
IUUC-Ola-087365	Oryzias latipes	60.11	2.00e-136	476.00
IUUC-Olu-087589	Ostreococcus lucimarinus	60.58	1.00e-136	478.00
IUUC-Oga-088357	Otolemur garnettii	58.20	4.00e-121	426.00
IUUC-Oar-089506	Ovis aries	61.71	2.00e-138	484.00
IUUC-Ptr-091532	Pan troglodytes	60.38	9.00e-131	458.00
IUUC-Pan-091927	Papio anubis	60.38	9.00e-131	458.00
IUUC-Psi-093358	Pelodiscus sinensis	61.43	5.00e-138	482.00
IUUC-Pma-094105	Petromyzon marinus	59.12	2.00e-39	154.00
IUUC-Ppa-095868	Physcomitrella patens	64.75	2.00e-137	481.00
IUUC-Pfo-096158	Poecilia formosa	59.84	8.00e-136	475.00
IUUC-Pab-098705	Pongo abelii	60.38	9.00e-131	458.00
IUUC-Pop-098989	Populus trichocarpa	60.11	3.00e-128	449.00
IUUC-Pca-100256	Procavia capensis	59.83	3.00e-127	446.00
IUUC-Ppe-101572	Prunus persica	63.23	2.00e-122	431.00
IUUC-Pva-102616	Pteropus vampyrus	60.17	4.00e-127	446.00
IUUC-Rno-105857	Rattus norvegicus	61.71	3.00e-138	483.00
IUUC-Sha-107326	Sarcophilus harrisii	52.06	4.00e-156	542.00
IUUC-Smo-109301	Selaginella moellendorffii	64.13	7.00e-140	488.00
IUUC-Sit-110710	Setaria italica	60.93	3.00e-136	476.00
IUUC-Sly-111336	Solanum lycopersicum	57.97	9.00e-129	452.00
IUUC-Stu-112786	Solanum tuberosum	47.18	2.00e-136	477.00
IUUC-Sar-112971	Sorex araneus	53.87	7.00e-117	412.00
IUUC-Sbi-114420	Sorghum bicolor	61.48	2.00e-136	478.00
IUUC-Sre-115175	Sporisorium reilianum	45.56	3.00e-60	225.00
IUUC-Ssc-115646	Sus scrofa	61.43	3.00e-138	483.00
IUUC-Tgu-116898	Taeniopygia guttata	61.16	5.00e-138	482.00
IUUC-Tru-117862	Takifugu rubripes	52.51	3.00e-156	543.00
IUUC-Tsy-118853	Tarsius syrichta	48.63	4.00e-98	350.00
IUUC-Tni-119986	Tetraodon nigroviridis	60.38	3.00e-136	476.00
IUUC-Tca-121739	Theobroma cacao	56.10	1.00e-122	431.00
IUUC-Tae-125368	Triticum aestivum	60.27	4.00e-130	456.00
IUUC-Tur-126856	Triticum urartu	59.00	8.00e-61	226.00
IUUC-Tme-127126	Tuber melanosporum	35.57	4.00e-52	196.00
IUUC-Tbe-127767	Tupaia belangeri	65.45	1.00e-112	397.00
IUUC-Ttr-128826	Tursiops truncatus	63.32	8.00e-123	432.00
IUUC-Uma-129469	Ustilago maydis	45.60	1.00e-60	226.00
IUUC-Vpa-130768	Vicugna pacos	59.83	3.00e-127	446.00
IUUC-Vvi-131193	Vitis vinifera	60.99	4.00e-130	456.00
IUUC-Xtr-132842	Xenopus tropicalis	57.38	3.00e-122	430.00
IUUC-Xma-134168	Xiphophorus maculatus	61.31	4.00e-137	479.00
IUUC-Yli-134648	Yarrowia lipolytica	27.10	5.00e-38	150.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence