iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-027894

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ring finger protein, LIM domain-interacting

Genbank Nucleotide ID

CR383680

Gene Name

rlim

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000079306.3	ENSDART00000113567.3	ENSDARP00000100039.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	6.00e-07	30.8	584	625

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C +++ +g  ++ lpC H +h +C+ +w       s + +CP+Cr
   Q: 584  CSVCITEYAEGnkLRKLPCSHEYHVHCIDRW------LSENSTCPICR 625
           9*******5554599****************......**********8 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MEGQDNADQG SSDQSEIQRR RQLDRLDREE AFYQFVNNLS EEDYRLMRDN NLLGTPGEIT 60
ADELLNRLRQ VKDGPESPSS NITEERREAP GATEVEGTEE NPSGETLLDW LNTVRQTGNT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGTACTATTA CGCACACCGG AAGTACATTC GATGCCGAAG AGACGCCTGA GAAAATGAAC 60
TCCTGAATAG CTGTCAAGAT TAAAACTTAC AAACATCTAC AGGTCACTAA CAGTAACTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0017015--P:regulation of transforming growth factor beta receptor signaling pathway

KEGG

dre:562487

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001407	Ailuropoda melanoleuca	87.16	2.00e-57	217.00
IUUC-Atr-002539	Amborella trichopoda	43.08	1.00e-14	74.30
IUUC-Apl-003969	Anas platyrhynchos	64.10	1.00e-115	410.00
IUUC-Aca-005377	Anolis carolinensis	61.41	2.00e-117	416.00
IUUC-Ame-011097	Astyanax mexicanus	75.76	2.00e-153	536.00
IUUC-Bdi-014392	Brachypodium distachyon	48.53	4.00e-14	71.60
IUUC-Bra-018013	Brassica rapa	45.71	5.00e-15	75.10
IUUC-Cpo-021533	Cavia porcellus	69.74	5.00e-48	185.00
IUUC-Cre-022755	Chlamydomonas reinhardtii	44.68	1.00e-13	67.40
IUUC-Csa-023242	Chlorocebus sabaeus	86.49	5.00e-58	219.00
IUUC-Cho-024536	Choloepus hoffmanni	59.34	2.00e-49	190.00
IUUC-Dno-029606	Dasypus novemcinctus	55.60	7.00e-101	361.00
IUUC-Dor-031042	Dipodomys ordii	63.54	6.00e-54	205.00
IUUC-Ete-033099	Echinops telfairi	50.96	1.00e-94	340.00
IUUC-Eca-033976	Equus caballus	54.12	7.00e-101	361.00
IUUC-Eeu-034964	Erinaceus europaeus	85.84	5.00e-59	222.00
IUUC-Fca-035662	Felis catus	87.16	2.00e-57	217.00
IUUC-Fal-036996	Ficedula albicollis	58.78	2.00e-107	383.00
IUUC-Gga-040816	Gallus gallus	61.56	3.00e-114	405.00
IUUC-Gac-041767	Gasterosteus aculeatus	59.62	4.00e-156	545.00
IUUC-Gma-044353	Glycine max	46.58	7.00e-15	75.10
IUUC-Ggo-044754	Gorilla gorilla	86.49	2.00e-58	220.00
IUUC-Hsa-045776	Homo sapiens	86.49	2.00e-58	220.00
IUUC-Hvu-047210	Hordeum vulgare	38.27	5.00e-14	72.40
IUUC-Itr-048044	Ictidomys tridecemlineatus	87.16	1.00e-57	217.00
IUUC-Lch-050178	Latimeria chalumnae	63.84	3.00e-121	429.00
IUUC-Loc-052124	Lepisosteus oculatus	63.37	1.00e-172	599.00
IUUC-Laf-054328	Loxodonta africana	88.07	5.00e-58	219.00
IUUC-Mcc-054739	Macaca mulatta	86.49	3.00e-58	219.00
IUUC-Meu-056359	Macropus eugenii	50.74	1.00e-142	500.00
IUUC-Mga-059838	Meleagris gallopavo	61.56	1.00e-114	407.00
IUUC-Mmr-060608	Microcebus murinus	86.49	2.00e-58	220.00
IUUC-Mdo-061961	Monodelphis domestica	88.79	1.00e-56	214.00
IUUC-Mac-065396	Musa acuminata	45.33	1.00e-14	73.60
IUUC-Mpu-066258	Mustela putorius furo	87.16	1.00e-57	218.00
IUUC-Mlu-066930	Myotis lucifugus	51.91	3.00e-100	359.00
IUUC-Nle-069311	Nomascus leucogenys	86.49	1.00e-58	221.00
IUUC-Opr-071124	Ochotona princeps	66.87	3.00e-46	179.00
IUUC-Ont-071511	Oreochromis niloticus	66.58	3.00e-116	412.00
IUUC-Oan-073036	Ornithorhynchus anatinus	87.85	2.00e-56	213.00
IUUC-Ocu-073795	Oryctolagus cuniculus	86.73	3.00e-59	223.00
IUUC-Obr-076503	Oryza brachyantha	44.74	2.00e-14	73.90
IUUC-Ome-081627	Oryza meridionalis	44.74	1.00e-14	74.70
IUUC-Opu-083578	Oryza punctata	44.74	1.00e-14	74.30
IUUC-Ola-087461	Oryzias latipes	63.92	3.00e-108	386.00
IUUC-Olu-087781	Ostreococcus lucimarinus	51.11	4.00e-13	67.80
IUUC-Oga-088022	Otolemur garnettii	55.41	3.00e-100	359.00
IUUC-Ptr-090604	Pan troglodytes	86.49	2.00e-58	220.00
IUUC-Pan-092322	Papio anubis	86.49	3.00e-58	219.00
IUUC-Psi-093936	Pelodiscus sinensis	61.54	3.00e-103	369.00
IUUC-Pno-095077	Phaeosphaeria nodorum	44.68	4.00e-11	60.80
IUUC-Ppa-095197	Physcomitrella patens	45.21	1.00e-15	78.60
IUUC-Pfo-096616	Poecilia formosa	69.05	4.00e-107	382.00
IUUC-Pab-098671	Pongo abelii	86.49	3.00e-58	219.00
IUUC-Pop-099808	Populus trichocarpa	45.21	9.00e-15	74.70
IUUC-Pca-100263	Procavia capensis	86.24	5.00e-56	212.00
IUUC-Ppe-101995	Prunus persica	47.83	1.00e-14	73.90
IUUC-Pva-102709	Pteropus vampyrus	85.59	3.00e-57	216.00
IUUC-Rno-105759	Rattus norvegicus	85.59	5.00e-57	216.00
IUUC-Sha-106792	Sarcophilus harrisii	85.47	2.00e-59	223.00
IUUC-Sly-111747	Solanum lycopersicum	62.86	4.00e-12	66.20
IUUC-Stu-112633	Solanum tuberosum	62.86	6.00e-12	65.90
IUUC-Sar-113271	Sorex araneus	60.75	5.00e-53	202.00
IUUC-Ssc-115738	Sus scrofa	55.99	3.00e-100	359.00
IUUC-Tgu-117205	Taeniopygia guttata	64.67	1.00e-114	407.00
IUUC-Tru-118123	Takifugu rubripes	65.08	2.00e-99	357.00
IUUC-Tsy-119421	Tarsius syrichta	55.41	6.00e-101	361.00
IUUC-Tni-120299	Tetraodon nigroviridis	64.57	9.00e-97	347.00
IUUC-Tca-121654	Theobroma cacao	37.78	1.00e-14	73.90
IUUC-Tae-125871	Triticum aestivum	33.70	2.00e-15	75.90
IUUC-Tur-126084	Triticum urartu	48.89	5.00e-13	71.20
IUUC-Tbe-127543	Tupaia belangeri	56.48	4.00e-160	558.00
IUUC-Vpa-130058	Vicugna pacos	86.24	7.00e-57	215.00
IUUC-Vvi-131093	Vitis vinifera	45.21	3.00e-14	73.20
IUUC-Xtr-132663	Xenopus tropicalis	63.52	1.00e-106	380.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence