iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.1__1125__AT1G10560.1	fgenesh2_kg.1__1125__AT1G10560.1	fgenesh2_kg.1__1125__AT1G10560.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.40e-27	95.0	290	360

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           e++lCpIsle+M dPvv+++G+tydrssI kw+ sg+ tcP+t++ l++++lv+n ++r++i ++c++n++
   Q: 290  EDLLCPISLEIMADPVVIETGHTYDRSSITKWFGSGNITCPKTGKILASTELVDNVSVRQVIRKHCKTNGI 360
           789*****************************************************************986 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MIHTKTGSGR RILTFPAVQP CESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRDTLR 60
RIRNLVLVFE EIRIRVGNFR RYFHNSAAVS SLKEIHVSFQ KLKFLFEDCT RDGARLCMMM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAACAAACT TTGATCTATA AGTCTTAGCA GCATGATCCA TACGAAAACC GGGTCTGGTC 60
GTCGGATCTT GACCTTTCCG GCTGTGCAAC CATGCGAATC AATCTCCATA GTCACCTTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010029--P:regulation of seed germination

KEGG

aly:ARALYDRAFT_471171

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006754	Arabidopsis thaliana	91.10	0.00e+00	1209.00
IUUC-Bol-015964	Brassica oleracea	77.86	0.00e+00	1081.00
IUUC-Bra-017789	Brassica rapa	77.18	0.00e+00	1031.00
IUUC-Loc-051960	Lepisosteus oculatus	28.48	1.00e-12	67.40
IUUC-Ppe-102097	Prunus persica	41.67	3.00e-136	478.00
IUUC-Sly-111130	Solanum lycopersicum	41.80	2.00e-151	528.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence