iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cja-019071

Ensembl Protein ID

ENSCJAP00000010011.1

UniProt Accession

F7CR49; F7CR49_CALJA

Genbank Protein ID

JAB06570.1; JAB17074.1; JAB32728.1; JAB40778.1; JAB49856.1

Protein Name

Pre-mRNA-processing factor 17

Genbank Nucleotide ID

ACFV01004901; GAMS01006062; GAMR01001204; GAMQ01001073; GAMP01002899

Gene Name

CDC40

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCJAG00000005410.1	ENSCJAT00000010506.1	ENSCJAP00000009944.1
ENSCJAG00000005410.1	ENSCJAT00000010576.1	ENSCJAP00000010011.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-30	104.6	330	367
UBD/Beta-Prp	7.10e-46	157.7	279	448

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd..tllvsGsdDgtikvWDlrtgvll 36
           gH+  v++++f++  t ++s+++D  +k+WD+ tg ++
   Q: 330  GHSKAVRDICFNTagTQFLSAAYDRYLKLWDTETGQCI 367
           8**********444699******************996 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdlet.gqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkl 171
           k++h+++gh++ v +++++p sg+ l+s s d  i++w++   + cl+ t+ gh+++v+ ++++  g  + s+++Dr ++lWd +tg++
   Q: 279  KQIHVWSGHTKGVSAVRLFPlSGHLLLSCSMDCKIKLWEVYGdRRCLR-TFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQC 366
           899*****************999****************975156776.**************************************** PP
   S: 172  lrtltgghtdsvyslsfdsng...kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..d 250
           + ++t  + +  y+++f+++    + +v+g  d+++  wd+++ge+v+++  h   v+ + f +++ r+vs+s+D+s+r+W  d
   Q: 367  ISRFT--NRKVPYCVKFNPDEdkqNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWewD 448
           ****8..588889***999988889*******************************************************9444 PP

Organism

Callithrix jacchus

Protein Sequence
(Fasta)

MSAAIAALAA SYGSGSGSES DSDSESSRCP LPGGDSLMHL TKSPSAKPSL AVAVDSAPEV 60
AVKEDLETGV HLDPAVKEVQ YNPTYETMFA PEFGPENPFR TQQMAAPRNM LSGYAEPAHI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCGCAGAGG ATTTGTTGCC GTCATGTCGG CTGCGATTGC GGCTCTGGCC GCTTCCTATG 60
GTTCGGGTTC AGGGTCCGAA TCGGACTCGG ACAGTGAGAG CAGTCGGTGT CCGCTGCCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0003723--F:RNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

cjc:100404742

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000473	Aegilops tauschii	50.00	5.00e-144	504.00
IUUC-Aml-002243	Ailuropoda melanoleuca	98.10	0.00e+00	808.00
IUUC-Atr-002502	Amborella trichopoda	51.13	2.00e-153	535.00
IUUC-Apl-003885	Anas platyrhynchos	94.26	0.00e+00	1020.00
IUUC-Aca-004854	Anolis carolinensis	69.47	0.00e+00	748.00
IUUC-Aly-006158	Arabidopsis lyrata	49.21	4.00e-155	541.00
IUUC-Ath-007474	Arabidopsis thaliana	52.25	3.00e-155	541.00
IUUC-Ago-007726	Ashbya gossypii	37.08	3.00e-70	259.00
IUUC-Acl-008220	Aspergillus clavatus	43.57	2.00e-132	466.00
IUUC-Afl-008473	Aspergillus flavus	42.88	3.00e-129	455.00
IUUC-Afu-008773	Aspergillus fumigatus	43.32	2.00e-130	459.00
IUUC-Ani-009323	Aspergillus nidulans	43.21	3.00e-117	415.00
IUUC-Ang-009851	Aspergillus niger	43.08	8.00e-131	460.00
IUUC-Aor-009950	Aspergillus oryzae	42.88	3.00e-129	455.00
IUUC-Ate-010372	Aspergillus terreus	44.61	3.00e-132	465.00
IUUC-Ame-011660	Astyanax mexicanus	85.74	0.00e+00	981.00
IUUC-Bgr-012230	Blumeria graminis	44.44	1.00e-125	442.00
IUUC-Bta-012568	Bos taurus	98.55	0.00e+00	1088.00
IUUC-Bci-013646	Botrytis cinerea	45.26	2.00e-122	432.00
IUUC-Bdi-014199	Brachypodium distachyon	50.48	3.00e-145	508.00
IUUC-Bol-015695	Brassica oleracea	50.54	1.00e-161	562.00
IUUC-Bra-017923	Brassica rapa	50.26	8.00e-163	566.00
IUUC-Cel-018535	Caenorhabditis elegans	51.27	1.00e-177	616.00
IUUC-Cfa-020559	Canis familiaris	98.55	0.00e+00	1087.00
IUUC-Cpo-022356	Cavia porcellus	98.73	0.00e+00	1093.00
IUUC-Cre-022594	Chlamydomonas reinhardtii	44.02	3.00e-77	281.00
IUUC-Csa-023125	Chlorocebus sabaeus	99.46	0.00e+00	1097.00
IUUC-Cho-024676	Choloepus hoffmanni	90.31	0.00e+00	951.00
IUUC-Cin-025229	Ciona intestinalis	71.23	0.00e+00	771.00
IUUC-Csv-025868	Ciona savignyi	71.58	6.00e-41	157.00
IUUC-Cgl-026739	Colletotrichum gloeosporioides	41.07	2.00e-107	382.00
IUUC-Cne-026885	Cryptococcus neoformans	51.93	3.00e-152	532.00
IUUC-Dre-027631	Danio rerio	85.16	0.00e+00	985.00
IUUC-Dno-029815	Dasypus novemcinctus	87.97	0.00e+00	1003.00
IUUC-Dor-031143	Dipodomys ordii	83.70	0.00e+00	915.00
IUUC-Dse-031520	Dothistroma septosporum	46.09	2.00e-96	346.00
IUUC-Dme-032050	Drosophila melanogaster	62.25	0.00e+00	745.00
IUUC-Ete-032866	Echinops telfairi	95.65	0.00e+00	1055.00
IUUC-Eca-033384	Equus caballus	98.91	0.00e+00	1090.00
IUUC-Eeu-034471	Erinaceus europaeus	84.24	0.00e+00	853.00
IUUC-Fca-035727	Felis catus	98.73	0.00e+00	1091.00
IUUC-Fal-036774	Ficedula albicollis	94.83	0.00e+00	1031.00
IUUC-Fox-037951	Fusarium oxysporum	42.14	8.00e-127	447.00
IUUC-Fso-038287	Fusarium solani	43.14	2.00e-124	439.00
IUUC-Gmo-039670	Gadus morhua	82.08	0.00e+00	949.00
IUUC-Ggr-039764	Gaeumannomyces graminis	40.22	1.00e-116	413.00
IUUC-Gga-040293	Gallus gallus	95.55	0.00e+00	1034.00
IUUC-Gac-042159	Gasterosteus aculeatus	85.25	0.00e+00	986.00
IUUC-Gma-044299	Glycine max	50.38	3.00e-145	508.00
IUUC-Ggo-044864	Gorilla gorilla	99.28	0.00e+00	1097.00
IUUC-Hsa-046602	Homo sapiens	99.28	0.00e+00	1097.00
IUUC-Itr-047985	Ictidomys tridecemlineatus	99.52	0.00e+00	818.00
IUUC-Kpa-049318	Komagataella pastoris	45.85	4.00e-96	345.00
IUUC-Lch-049796	Latimeria chalumnae	76.37	0.00e+00	850.00
IUUC-Lpe-051153	Leersia perrieri	50.09	1.00e-146	513.00
IUUC-Loc-052467	Lepisosteus oculatus	87.36	0.00e+00	995.00
IUUC-Lma-053107	Leptosphaeria maculans	48.16	7.00e-113	400.00
IUUC-Laf-053787	Loxodonta africana	98.01	0.00e+00	1115.00
IUUC-Mcc-055706	Macaca mulatta	99.64	0.00e+00	1100.00
IUUC-Meu-056757	Macropus eugenii	80.92	0.00e+00	637.00
IUUC-Mor-057079	Magnaporthe oryzae	38.86	3.00e-115	409.00
IUUC-Mpo-057533	Magnaporthe poae	50.71	3.00e-112	398.00
IUUC-Mtr-057950	Medicago truncatula	62.39	2.00e-135	476.00
IUUC-Mla-058910	Melampsora laricipopulina	47.22	2.00e-148	519.00
IUUC-Mga-059366	Meleagris gallopavo	94.47	0.00e+00	1032.00
IUUC-Mvi-060349	Microbotryum violaceum	58.69	1.00e-136	480.00
IUUC-Mmr-061209	Microcebus murinus	99.09	0.00e+00	1131.00
IUUC-Mdo-062118	Monodelphis domestica	95.47	0.00e+00	1099.00
IUUC-Mmu-063173	Mus musculus	98.91	0.00e+00	1092.00
IUUC-Mac-065080	Musa acuminata	49.82	4.00e-153	534.00
IUUC-Mpu-066659	Mustela putorius furo	98.37	0.00e+00	1088.00
IUUC-Mlu-067029	Myotis lucifugus	98.19	0.00e+00	1062.00
IUUC-Nfi-068334	Neosartorya fischeri	44.86	7.00e-132	464.00
IUUC-Ncr-068675	Neurospora crassa	38.61	3.00e-103	368.00
IUUC-Nle-070113	Nomascus leucogenys	98.55	0.00e+00	1092.00
IUUC-Opr-070685	Ochotona princeps	90.40	0.00e+00	1038.00
IUUC-Ont-071680	Oreochromis niloticus	84.83	0.00e+00	979.00
IUUC-Oan-073573	Ornithorhynchus anatinus	96.67	0.00e+00	961.00
IUUC-Ocu-074074	Oryctolagus cuniculus	98.55	0.00e+00	1125.00
IUUC-Oba-075625	Oryza barthii	50.36	1.00e-147	516.00
IUUC-Obr-076510	Oryza brachyantha	49.73	2.00e-147	516.00
IUUC-Ogl-077275	Oryza glaberrima	50.36	1.00e-147	516.00
IUUC-Ogu-078563	Oryza glumaepatula	50.36	2.00e-147	516.00
IUUC-Oin-079898	Oryza indica	63.45	2.00e-134	471.00
IUUC-Olo-081080	Oryza longistaminata	52.02	3.00e-141	494.00
IUUC-Oni-083121	Oryza nivara	50.36	1.00e-147	516.00
IUUC-Opu-083329	Oryza punctata	50.27	1.00e-146	513.00
IUUC-Oru-084807	Oryza rufipogon	49.80	4.00e-129	454.00
IUUC-Osa-086039	Oryza sativa	50.45	3.00e-148	518.00
IUUC-Ola-087149	Oryzias latipes	84.07	0.00e+00	969.00
IUUC-Olu-087627	Ostreococcus lucimarinus	43.55	3.00e-121	428.00
IUUC-Oga-088359	Otolemur garnettii	98.91	0.00e+00	1092.00
IUUC-Oar-089390	Ovis aries	98.55	0.00e+00	1085.00
IUUC-Ptr-090894	Pan troglodytes	99.28	0.00e+00	1097.00
IUUC-Pan-092476	Papio anubis	99.64	0.00e+00	1100.00
IUUC-Psi-093527	Pelodiscus sinensis	92.93	0.00e+00	984.00
IUUC-Pno-094771	Phaeosphaeria nodorum	48.19	1.00e-112	399.00
IUUC-Ppa-095386	Physcomitrella patens	50.47	2.00e-155	542.00
IUUC-Pfo-096139	Poecilia formosa	86.11	0.00e+00	989.00
IUUC-Pab-097838	Pongo abelii	99.39	0.00e+00	974.00
IUUC-Pop-098945	Populus trichocarpa	51.50	1.00e-152	533.00
IUUC-Pca-100876	Procavia capensis	82.79	0.00e+00	932.00
IUUC-Ppe-101777	Prunus persica	50.85	4.00e-151	528.00
IUUC-Pva-102418	Pteropus vampyrus	97.83	0.00e+00	1082.00
IUUC-Pgr-103456	Puccinia graminis	50.55	3.00e-159	555.00
IUUC-Ptt-103731	Puccinia triticina	46.57	1.00e-145	509.00
IUUC-Pte-104386	Pyrenophora teres	49.51	3.00e-114	405.00
IUUC-Pyt-104560	Pyrenophora triticirepentis	50.49	3.00e-114	405.00
IUUC-Rno-105694	Rattus norvegicus	94.38	0.00e+00	1022.00
IUUC-Sce-106339	Saccharomyces cerevisiae	37.89	1.00e-75	276.00
IUUC-Sha-106709	Sarcophilus harrisii	95.65	0.00e+00	1097.00
IUUC-Sja-107817	Schizosaccharomyces japonicus	40.54	1.00e-124	439.00
IUUC-Spo-108331	Schizosaccharomyces pombe	42.34	8.00e-123	434.00
IUUC-Ssl-108530	Sclerotinia sclerotiorum	47.31	9.00e-117	413.00
IUUC-Smo-108778	Selaginella moellendorffii	45.30	8.00e-127	447.00
IUUC-Sit-110446	Setaria italica	48.62	4.00e-145	508.00
IUUC-Sly-111330	Solanum lycopersicum	50.56	9.00e-151	526.00
IUUC-Stu-112610	Solanum tuberosum	50.18	7.00e-151	527.00
IUUC-Sar-113065	Sorex araneus	78.33	2.00e-126	445.00
IUUC-Sbi-114005	Sorghum bicolor	49.71	9.00e-143	500.00
IUUC-Sre-114988	Sporisorium reilianum	50.19	6.00e-158	550.00
IUUC-Ssc-115760	Sus scrofa	98.91	0.00e+00	1093.00
IUUC-Tgu-116493	Taeniopygia guttata	95.36	0.00e+00	1037.00
IUUC-Tru-118489	Takifugu rubripes	81.68	0.00e+00	949.00
IUUC-Tsy-119332	Tarsius syrichta	98.55	0.00e+00	1127.00
IUUC-Tni-120202	Tetraodon nigroviridis	78.61	0.00e+00	880.00
IUUC-Tca-121429	Theobroma cacao	49.72	2.00e-150	525.00
IUUC-Tre-122162	Trichoderma reesei	43.20	8.00e-125	440.00
IUUC-Tvi-122500	Trichoderma virens	42.75	9.00e-122	430.00
IUUC-Tae-125557	Triticum aestivum	48.71	7.00e-144	504.00
IUUC-Tur-126554	Triticum urartu	48.61	6.00e-142	497.00
IUUC-Tme-126919	Tuber melanosporum	45.87	1.00e-138	486.00
IUUC-Tbe-127968	Tupaia belangeri	93.12	0.00e+00	1048.00
IUUC-Ttr-129215	Tursiops truncatus	98.01	0.00e+00	1078.00
IUUC-Uma-129622	Ustilago maydis	49.46	4.00e-160	558.00
IUUC-Vda-129750	Verticillium dahliae	44.38	8.00e-124	437.00
IUUC-Vpa-130617	Vicugna pacos	96.51	0.00e+00	981.00
IUUC-Vvi-131238	Vitis vinifera	61.81	3.00e-134	471.00
IUUC-Xtr-131865	Xenopus tropicalis	90.26	0.00e+00	1013.00
IUUC-Xma-133627	Xiphophorus maculatus	86.29	0.00e+00	992.00
IUUC-Yli-134390	Yarrowia lipolytica	45.76	1.00e-115	409.00
IUUC-Zma-135925	Zea mays	51.24	8.00e-141	493.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence