iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pgr-103453

Ensembl Protein ID

EFP78502

UniProt Accession

E3K2D3; E3K2D3_PUCGT

Genbank Protein ID

EFP78502.2

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

DS178270

Gene Name

PGTG_04458

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGTG_04458	EFP78502	EFP78502

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-31	106.3	165	195
UBD/Beta-Prp	4.80e-67	225.9	82	362

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H d ++cla  ++ +l+++GsdD tik+WD+
   Q: 165  HPDYIRCLAVhPTqPLVLTGSDDMTIKLWDW 195
           99********9888****************7 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           ++++++v+f+p +++l++g ++g++ vw ++tg ll+++   e +v++ +f+ +++++v gs+D +++v++++t+  v ++++h d++++l+++p++  ++
   Q: 82   SERVKSVDFHPTEPWLLAGLYSGKVFVWHTETGALLKTFTPTEVPVRCARFIARKNWFVCGSDDFHLRVFNYNTSARVAAFEAHPDYIRCLAVHPTQPLVL 182
           67899************************************************************************************************ PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvklwd 208
           +Gs+d ti++wd+++ ++  ++++gh++ ++ ++++p++ n ++s++lDrtv++W+l + +   tl   h++ v+ +++ + g  ++lv+ ++d+ +k+wd
   Q: 183  TGSDDMTIKLWDWDKSWKCLQVFEGHTHYIMNLAFNPKDsNTFASSCLDRTVKVWSLGSHTANFTLDA-HEKGVNYVEYYHGGdkPYLVTTGDDRLIKIWD 282
           **************9987777*********************************************98.*********9988888**************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskv 289
           + +++c++tl+gh++nv+   f+p   +++sgs+Dg+++iW + +  l +tl++  ++ ++v++ + ++n + lg ++++v
   Q: 283  YLSKSCIQTLEGHQSNVSYAIFHPSLPIIISGSEDGTVKIWHSSTYRLENTLNYGLERAWCVTY-GKKGNDIGLGFDEGSV 362
           ***************************************************************9.7777777666555544 PP

Organism

Puccinia graminis

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MCVVLLSLTT SWGPVGRSTS SSGVPPHSLL TVIIPSDRTS SSSNISATDK NTQVHPISNH 60
GSHRIDNPGM LLDITRKLLT RSERVKSVDF HPTEPWLLAG LYSGKVFVWH TETGALLKTF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTGTGTGG TGTTGTTGTC GTTGACTACG TCGTGGGGAC CAGTAGGTCG CTCGACCAGT 60
TCCAGCGGAG TACCACCACA TTCCCTGTTG ACCGTCATCA TCCCATCCGA TCGAACTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

pgr:PGTG_04458

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	45.55	0.00e+00	765.00
IUUC-Aml-002154	Ailuropoda melanoleuca	54.31	0.00e+00	941.00
IUUC-Atr-003090	Amborella trichopoda	50.84	0.00e+00	881.00
IUUC-Apl-003976	Anas platyrhynchos	53.96	0.00e+00	944.00
IUUC-Aca-004301	Anolis carolinensis	54.10	0.00e+00	945.00
IUUC-Aly-005643	Arabidopsis lyrata	52.73	0.00e+00	895.00
IUUC-Ath-007635	Arabidopsis thaliana	52.25	0.00e+00	900.00
IUUC-Acl-008237	Aspergillus clavatus	58.62	0.00e+00	1010.00
IUUC-Afl-008535	Aspergillus flavus	58.05	0.00e+00	966.00
IUUC-Afu-008845	Aspergillus fumigatus	59.22	0.00e+00	995.00
IUUC-Ate-010355	Aspergillus terreus	58.62	0.00e+00	983.00
IUUC-Ame-010922	Astyanax mexicanus	48.71	0.00e+00	799.00
IUUC-Bgr-012249	Blumeria graminis	56.39	0.00e+00	945.00
IUUC-Bdi-015046	Brachypodium distachyon	52.81	0.00e+00	905.00
IUUC-Bol-016271	Brassica oleracea	52.31	0.00e+00	914.00
IUUC-Bra-017758	Brassica rapa	52.75	0.00e+00	906.00
IUUC-Cel-018387	Caenorhabditis elegans	49.39	0.00e+00	871.00
IUUC-Cja-019145	Callithrix jacchus	54.31	0.00e+00	941.00
IUUC-Cfa-020564	Canis familiaris	54.31	0.00e+00	940.00
IUUC-Cpo-022201	Cavia porcellus	54.31	0.00e+00	940.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	52.38	0.00e+00	858.00
IUUC-Cho-024454	Choloepus hoffmanni	51.44	0.00e+00	806.00
IUUC-Cin-025681	Ciona intestinalis	51.72	0.00e+00	879.00
IUUC-Csv-026012	Ciona savignyi	53.00	0.00e+00	871.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	53.20	0.00e+00	847.00
IUUC-Cne-026986	Cryptococcus neoformans	63.12	0.00e+00	1099.00
IUUC-Cme-027219	Cyanidioschyzon merolae	43.31	0.00e+00	785.00
IUUC-Dre-027846	Danio rerio	53.14	0.00e+00	937.00
IUUC-Dse-031268	Dothistroma septosporum	57.49	0.00e+00	986.00
IUUC-Dme-031791	Drosophila melanogaster	51.41	0.00e+00	878.00
IUUC-Ete-033166	Echinops telfairi	51.35	8.00e-176	608.00
IUUC-Eca-034180	Equus caballus	53.48	0.00e+00	906.00
IUUC-Eeu-035086	Erinaceus europaeus	41.78	3.00e-93	335.00
IUUC-Fca-036265	Felis catus	53.86	0.00e+00	940.00
IUUC-Gmo-039046	Gadus morhua	53.67	0.00e+00	932.00
IUUC-Gga-041112	Gallus gallus	53.97	0.00e+00	947.00
IUUC-Gac-041733	Gasterosteus aculeatus	52.22	0.00e+00	904.00
IUUC-Gma-044333	Glycine max	53.34	0.00e+00	918.00
IUUC-Hsa-046698	Homo sapiens	54.31	0.00e+00	941.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	53.86	0.00e+00	939.00
IUUC-Lch-050473	Latimeria chalumnae	54.11	0.00e+00	943.00
IUUC-Lpe-051579	Leersia perrieri	53.94	0.00e+00	919.00
IUUC-Loc-052675	Lepisosteus oculatus	53.62	0.00e+00	937.00
IUUC-Laf-053757	Loxodonta africana	54.41	0.00e+00	934.00
IUUC-Mcc-054859	Macaca mulatta	54.31	0.00e+00	941.00
IUUC-Meu-056174	Macropus eugenii	44.41	2.00e-81	295.00
IUUC-Mpo-057538	Magnaporthe poae	57.41	0.00e+00	938.00
IUUC-Mtr-058310	Medicago truncatula	53.11	0.00e+00	914.00
IUUC-Mla-058937	Melampsora laricipopulina	77.54	0.00e+00	1297.00
IUUC-Mga-059875	Meleagris gallopavo	53.71	0.00e+00	942.00
IUUC-Mvi-060240	Microbotryum violaceum	71.39	0.00e+00	1241.00
IUUC-Mmr-061261	Microcebus murinus	54.31	0.00e+00	940.00
IUUC-Mdo-062076	Monodelphis domestica	54.22	0.00e+00	947.00
IUUC-Mmu-063324	Mus musculus	54.43	0.00e+00	942.00
IUUC-Mac-064636	Musa acuminata	51.43	0.00e+00	897.00
IUUC-Mpu-065961	Mustela putorius furo	53.86	0.00e+00	941.00
IUUC-Nfi-068277	Neosartorya fischeri	59.20	0.00e+00	990.00
IUUC-Ncr-068659	Neurospora crassa	56.17	0.00e+00	964.00
IUUC-Nle-069034	Nomascus leucogenys	54.31	0.00e+00	941.00
IUUC-Opr-070334	Ochotona princeps	55.40	0.00e+00	874.00
IUUC-Ont-071563	Oreochromis niloticus	53.32	0.00e+00	930.00
IUUC-Oan-073416	Ornithorhynchus anatinus	54.01	0.00e+00	900.00
IUUC-Ocu-074522	Oryctolagus cuniculus	54.18	0.00e+00	935.00
IUUC-Oba-075760	Oryza barthii	50.86	0.00e+00	875.00
IUUC-Obr-076163	Oryza brachyantha	53.91	0.00e+00	909.00
IUUC-Ogl-077450	Oryza glaberrima	51.83	0.00e+00	902.00
IUUC-Ogu-078994	Oryza glumaepatula	50.86	0.00e+00	875.00
IUUC-Oin-079856	Oryza indica	53.36	0.00e+00	904.00
IUUC-Olo-080731	Oryza longistaminata	51.33	0.00e+00	863.00
IUUC-Ome-081554	Oryza meridionalis	50.24	0.00e+00	832.00
IUUC-Oni-082324	Oryza nivara	50.86	0.00e+00	876.00
IUUC-Opu-083400	Oryza punctata	52.33	0.00e+00	890.00
IUUC-Oru-085196	Oryza rufipogon	52.25	0.00e+00	880.00
IUUC-Osa-086026	Oryza sativa	51.96	0.00e+00	905.00
IUUC-Ola-087245	Oryzias latipes	52.83	0.00e+00	929.00
IUUC-Oga-088163	Otolemur garnettii	52.63	0.00e+00	896.00
IUUC-Oar-089842	Ovis aries	54.43	0.00e+00	941.00
IUUC-Ptr-090501	Pan troglodytes	54.31	0.00e+00	941.00
IUUC-Pan-092011	Papio anubis	54.31	0.00e+00	942.00
IUUC-Psi-093308	Pelodiscus sinensis	54.42	0.00e+00	942.00
IUUC-Pma-094695	Petromyzon marinus	52.19	0.00e+00	853.00
IUUC-Ppa-095911	Physcomitrella patens	52.57	0.00e+00	910.00
IUUC-Pfo-096587	Poecilia formosa	52.96	0.00e+00	932.00
IUUC-Pab-097926	Pongo abelii	53.10	0.00e+00	876.00
IUUC-Pop-099634	Populus trichocarpa	53.55	0.00e+00	917.00
IUUC-Pca-100965	Procavia capensis	52.75	0.00e+00	904.00
IUUC-Ppe-101470	Prunus persica	53.97	0.00e+00	925.00
IUUC-Pva-102451	Pteropus vampyrus	52.34	0.00e+00	743.00
IUUC-Ptt-103868	Puccinia triticina	97.12	0.00e+00	1666.00
IUUC-Sce-106269	Saccharomyces cerevisiae	48.77	0.00e+00	803.00
IUUC-Sha-106905	Sarcophilus harrisii	54.22	0.00e+00	946.00
IUUC-Spo-108299	Schizosaccharomyces pombe	50.13	0.00e+00	863.00
IUUC-Sit-110239	Setaria italica	52.69	0.00e+00	914.00
IUUC-Sly-111775	Solanum lycopersicum	52.61	0.00e+00	902.00
IUUC-Stu-112906	Solanum tuberosum	52.05	0.00e+00	821.00
IUUC-Sar-113472	Sorex araneus	51.38	0.00e+00	679.00
IUUC-Sbi-113801	Sorghum bicolor	53.55	0.00e+00	906.00
IUUC-Sre-115040	Sporisorium reilianum	64.91	0.00e+00	1134.00
IUUC-Ssc-115593	Sus scrofa	54.18	0.00e+00	939.00
IUUC-Tgu-117239	Taeniopygia guttata	53.84	0.00e+00	945.00
IUUC-Tru-118025	Takifugu rubripes	52.62	0.00e+00	927.00
IUUC-Tni-120142	Tetraodon nigroviridis	52.83	0.00e+00	922.00
IUUC-Tca-121613	Theobroma cacao	53.60	0.00e+00	921.00
IUUC-Tae-125395	Triticum aestivum	52.20	0.00e+00	904.00
IUUC-Tme-127041	Tuber melanosporum	58.19	0.00e+00	994.00
IUUC-Tbe-127770	Tupaia belangeri	54.75	0.00e+00	786.00
IUUC-Ttr-129294	Tursiops truncatus	54.18	0.00e+00	937.00
IUUC-Uma-129351	Ustilago maydis	64.30	0.00e+00	1138.00
IUUC-Vda-129716	Verticillium dahliae	58.26	0.00e+00	990.00
IUUC-Vpa-130037	Vicugna pacos	42.38	6.00e-103	367.00
IUUC-Vvi-131689	Vitis vinifera	53.96	0.00e+00	914.00
IUUC-Xtr-132633	Xenopus tropicalis	54.81	0.00e+00	949.00
IUUC-Xma-133347	Xiphophorus maculatus	52.83	0.00e+00	930.00
IUUC-Yli-134455	Yarrowia lipolytica	50.86	0.00e+00	853.00
IUUC-Zma-135867	Zea mays	53.79	0.00e+00	928.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence