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Tag Content
UUCD2 ID IUUC-Vvi-131689
UUCD1 version UUC-ViV-00868
Ensembl Protein ID VIT_09s0002g04810.t01
UniProt Accession F6HX23; F6HX23_VITVI
Genbank Protein ID CCB59493.1
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID FN596494
Gene Name VIT_09s0002g04810
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
VIT_09s0002g04810 VIT_09s0002g04810.t01 VIT_09s0002g04810.t01
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.20e-35 119.7 209 249
UBD/Beta-Prp 7.30e-68 229.5 39 314
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 209  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 249
           9999****966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           +++++++v+ +p++++++++ ++gt+ +w+++++++ +s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d+
   Q: 39   RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY 126
           5678999********************************************************************************* PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsv 183
           +++++++p+  +++s s+d  i++wd+e+g++  ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h++ v
   Q: 127  IRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGV 213
           *******************************9999*********************************************98.***** PP
   S: 184  ysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvis 269
           ++++     ++++l++gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW  ++  l +tl++  ++v++
   Q: 214  NCVDyfTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 301
           ****6444555***************************************************************************** PP
   S: 270  vavlsfgdnvlvl 282
           v +++ +++v++ 
   Q: 302  VGYMKGSRRVVIG 314
           *997777777643 PP
   
Organism Vitis vinifera
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MICASASGFS LDLVRICFDL MFLLHYPLRL EIKRKLAQRS ERVKSVDLHP SEPWILASLY 60
SGTVCIWNYQ SQTMAKSFEV TELPVRSAKF IARKQWVVAG ADDMFIRVYN YNTMDKVKVF 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Vvi-131689|E3,WD_repeat;UBD,Beta-Prp|Vitis vinifera
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGATTTGTG CTTCCGCTTC TGGATTTAGC TTAGATCTGG TTCGAATCTG CTTCGATTTG 60
ATGTTCTTAT TGCATTACGT GCCTAATTAT AGAAATTTTC GCTAATTTGA TTGAAATTAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Vvi-131689|E3,WD_repeat;UBD,Beta-Prp|Vitis vinifera
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0016021--C:integral component of membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 76.22 0.00e+00 1389.00
IUUC-Aml-002154 Ailuropoda melanoleuca 60.14 0.00e+00 1120.00
IUUC-Atr-003090 Amborella trichopoda 85.01 0.00e+00 1536.00
IUUC-Apl-003976 Anas platyrhynchos 60.65 0.00e+00 1118.00
IUUC-Aca-004301 Anolis carolinensis 61.21 0.00e+00 1118.00
IUUC-Aly-006508 Arabidopsis lyrata 89.28 0.00e+00 1600.00
IUUC-Ath-007635 Arabidopsis thaliana 89.04 0.00e+00 1594.00
IUUC-Ago-007914 Ashbya gossypii 47.36 0.00e+00 728.00
IUUC-Acl-008237 Aspergillus clavatus 53.29 0.00e+00 917.00
IUUC-Afl-008535 Aspergillus flavus 54.34 0.00e+00 867.00
IUUC-Afu-008845 Aspergillus fumigatus 53.33 0.00e+00 904.00
IUUC-Ani-009135 Aspergillus nidulans 55.56 0.00e+00 893.00
IUUC-Ang-009654 Aspergillus niger 57.58 0.00e+00 827.00
IUUC-Aor-009939 Aspergillus oryzae 52.86 0.00e+00 926.00
IUUC-Ate-010355 Aspergillus terreus 53.53 0.00e+00 888.00
IUUC-Ame-010922 Astyanax mexicanus 56.81 0.00e+00 965.00
IUUC-Bgr-012249 Blumeria graminis 53.03 0.00e+00 900.00
IUUC-Bta-013579 Bos taurus 62.38 0.00e+00 973.00
IUUC-Bci-013866 Botrytis cinerea 54.77 0.00e+00 905.00
IUUC-Bdi-015046 Brachypodium distachyon 85.70 0.00e+00 1524.00
IUUC-Bol-015731 Brassica oleracea 86.67 0.00e+00 1597.00
IUUC-Bra-017758 Brassica rapa 87.47 0.00e+00 1585.00
IUUC-Cel-018387 Caenorhabditis elegans 53.44 0.00e+00 978.00
IUUC-Cja-019145 Callithrix jacchus 59.91 0.00e+00 1118.00
IUUC-Cfa-020564 Canis familiaris 60.14 0.00e+00 1119.00
IUUC-Cpo-022201 Cavia porcellus 61.37 0.00e+00 1118.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 66.95 0.00e+00 1122.00
IUUC-Csa-023383 Chlorocebus sabaeus 65.91 0.00e+00 837.00
IUUC-Cho-024454 Choloepus hoffmanni 59.16 0.00e+00 926.00
IUUC-Cin-025681 Ciona intestinalis 60.02 0.00e+00 1001.00
IUUC-Csv-026012 Ciona savignyi 59.05 0.00e+00 974.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 50.92 0.00e+00 818.00
IUUC-Cne-026986 Cryptococcus neoformans 49.82 0.00e+00 868.00
IUUC-Cme-027219 Cyanidioschyzon merolae 49.59 0.00e+00 882.00
IUUC-Dre-027846 Danio rerio 61.86 0.00e+00 1115.00
IUUC-Dor-030462 Dipodomys ordii 59.61 0.00e+00 853.00
IUUC-Dse-031268 Dothistroma septosporum 53.72 0.00e+00 900.00
IUUC-Dme-031791 Drosophila melanogaster 56.81 0.00e+00 1006.00
IUUC-Ete-033166 Echinops telfairi 58.68 0.00e+00 704.00
IUUC-Eca-034180 Equus caballus 58.57 0.00e+00 1075.00
IUUC-Eeu-035086 Erinaceus europaeus 49.90 1.00e-126 446.00
IUUC-Fca-036265 Felis catus 60.02 0.00e+00 1117.00
IUUC-Fal-037202 Ficedula albicollis 60.17 0.00e+00 1071.00
IUUC-Fox-037711 Fusarium oxysporum 55.15 0.00e+00 866.00
IUUC-Fso-038268 Fusarium solani 54.37 0.00e+00 871.00
IUUC-Gmo-039046 Gadus morhua 61.38 0.00e+00 1103.00
IUUC-Ggr-039863 Gaeumannomyces graminis 53.74 0.00e+00 887.00
IUUC-Gga-041112 Gallus gallus 61.61 0.00e+00 1123.00
IUUC-Gac-041733 Gasterosteus aculeatus 61.50 0.00e+00 1072.00
IUUC-Gma-042910 Glycine max 92.93 0.00e+00 1674.00
IUUC-Ggo-044984 Gorilla gorilla 59.91 0.00e+00 1117.00
IUUC-Hsa-046698 Homo sapiens 59.91 0.00e+00 1117.00
IUUC-Hvu-047669 Hordeum vulgare 90.68 0.00e+00 701.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 61.26 0.00e+00 1113.00
IUUC-Kpa-049265 Komagataella pastoris 51.79 0.00e+00 845.00
IUUC-Lch-050473 Latimeria chalumnae 62.59 0.00e+00 1116.00
IUUC-Lpe-051579 Leersia perrieri 86.12 0.00e+00 1531.00
IUUC-Loc-052675 Lepisosteus oculatus 61.42 0.00e+00 1116.00
IUUC-Lma-053218 Leptosphaeria maculans 52.57 0.00e+00 873.00
IUUC-Laf-053757 Loxodonta africana 61.35 0.00e+00 1114.00
IUUC-Mcc-054859 Macaca mulatta 59.91 0.00e+00 1118.00
IUUC-Meu-056174 Macropus eugenii 52.39 4.00e-111 394.00
IUUC-Mor-057264 Magnaporthe oryzae 54.36 0.00e+00 878.00
IUUC-Mpo-057538 Magnaporthe poae 53.50 0.00e+00 892.00
IUUC-Mtr-058618 Medicago truncatula 92.56 0.00e+00 1636.00
IUUC-Mla-058937 Melampsora laricipopulina 53.89 0.00e+00 901.00
IUUC-Mga-059875 Meleagris gallopavo 61.47 0.00e+00 1120.00
IUUC-Mvi-060240 Microbotryum violaceum 53.17 0.00e+00 909.00
IUUC-Mmr-061261 Microcebus murinus 61.37 0.00e+00 1117.00
IUUC-Mdo-062076 Monodelphis domestica 61.00 0.00e+00 1125.00
IUUC-Mmu-063324 Mus musculus 61.37 0.00e+00 1118.00
IUUC-Mac-064636 Musa acuminata 87.51 0.00e+00 1589.00
IUUC-Mpu-065961 Mustela putorius furo 60.02 0.00e+00 1117.00
IUUC-Mlu-067059 Myotis lucifugus 59.33 0.00e+00 1105.00
IUUC-Nfi-068277 Neosartorya fischeri 53.17 0.00e+00 893.00
IUUC-Ncr-068659 Neurospora crassa 53.73 0.00e+00 906.00
IUUC-Nle-069034 Nomascus leucogenys 61.26 0.00e+00 1117.00
IUUC-Opr-070334 Ochotona princeps 63.09 0.00e+00 1007.00
IUUC-Ont-071563 Oreochromis niloticus 61.50 0.00e+00 1109.00
IUUC-Oan-073416 Ornithorhynchus anatinus 60.91 0.00e+00 1062.00
IUUC-Ocu-074522 Oryctolagus cuniculus 59.91 0.00e+00 1112.00
IUUC-Oba-075760 Oryza barthii 86.87 0.00e+00 1553.00
IUUC-Obr-076201 Oryza brachyantha 85.96 0.00e+00 1538.00
IUUC-Ogl-077450 Oryza glaberrima 87.69 0.00e+00 1577.00
IUUC-Ogu-078994 Oryza glumaepatula 86.87 0.00e+00 1551.00
IUUC-Oin-079211 Oryza indica 85.70 0.00e+00 1526.00
IUUC-Olo-080731 Oryza longistaminata 85.63 0.00e+00 1528.00
IUUC-Ome-081762 Oryza meridionalis 80.43 0.00e+00 1436.00
IUUC-Oni-082324 Oryza nivara 86.87 0.00e+00 1552.00
IUUC-Opu-083400 Oryza punctata 82.67 0.00e+00 1499.00
IUUC-Oru-084829 Oryza rufipogon 86.87 0.00e+00 1552.00
IUUC-Osa-086026 Oryza sativa 87.92 0.00e+00 1580.00
IUUC-Ola-087245 Oryzias latipes 62.21 0.00e+00 1107.00
IUUC-Olu-087655 Ostreococcus lucimarinus 66.29 0.00e+00 1146.00
IUUC-Oga-088163 Otolemur garnettii 59.17 0.00e+00 1063.00
IUUC-Oar-089842 Ovis aries 60.14 0.00e+00 1121.00
IUUC-Ptr-090501 Pan troglodytes 61.26 0.00e+00 1118.00
IUUC-Pan-092011 Papio anubis 59.91 0.00e+00 1118.00
IUUC-Psi-093308 Pelodiscus sinensis 61.49 0.00e+00 1122.00
IUUC-Pma-094695 Petromyzon marinus 59.15 0.00e+00 988.00
IUUC-Pno-094785 Phaeosphaeria nodorum 59.79 3.00e-105 374.00
IUUC-Ppa-095911 Physcomitrella patens 80.65 0.00e+00 1441.00
IUUC-Pfo-096587 Poecilia formosa 62.45 0.00e+00 1109.00
IUUC-Pab-097926 Pongo abelii 59.95 0.00e+00 1047.00
IUUC-Pop-099634 Populus trichocarpa 92.07 0.00e+00 1658.00
IUUC-Pca-100965 Procavia capensis 59.22 0.00e+00 1085.00
IUUC-Ppe-101470 Prunus persica 93.60 0.00e+00 1691.00
IUUC-Pva-102451 Pteropus vampyrus 58.56 0.00e+00 847.00
IUUC-Pgr-103453 Puccinia graminis 53.83 0.00e+00 912.00
IUUC-Ptt-103868 Puccinia triticina 53.83 0.00e+00 907.00
IUUC-Pte-104274 Pyrenophora teres 53.72 0.00e+00 902.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 53.05 0.00e+00 852.00
IUUC-Rno-105979 Rattus norvegicus 54.12 0.00e+00 820.00
IUUC-Sce-106269 Saccharomyces cerevisiae 47.10 0.00e+00 754.00
IUUC-Sha-106905 Sarcophilus harrisii 61.07 0.00e+00 1125.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 46.90 0.00e+00 778.00
IUUC-Spo-108299 Schizosaccharomyces pombe 46.84 0.00e+00 799.00
IUUC-Smo-108828 Selaginella moellendorffii 81.37 0.00e+00 1412.00
IUUC-Sit-110239 Setaria italica 86.67 0.00e+00 1574.00
IUUC-Sly-111775 Solanum lycopersicum 88.63 0.00e+00 1601.00
IUUC-Stu-112906 Solanum tuberosum 89.05 0.00e+00 1458.00
IUUC-Sar-113472 Sorex araneus 57.42 0.00e+00 763.00
IUUC-Sbi-113801 Sorghum bicolor 85.80 0.00e+00 1538.00
IUUC-Sre-115040 Sporisorium reilianum 53.11 0.00e+00 905.00
IUUC-Ssc-115593 Sus scrofa 61.26 0.00e+00 1117.00
IUUC-Tgu-117239 Taeniopygia guttata 61.49 0.00e+00 1121.00
IUUC-Tru-118025 Takifugu rubripes 62.15 0.00e+00 1110.00
IUUC-Tsy-118824 Tarsius syrichta 58.35 0.00e+00 787.00
IUUC-Tni-120142 Tetraodon nigroviridis 61.86 0.00e+00 1101.00
IUUC-Tca-121613 Theobroma cacao 95.10 0.00e+00 1703.00
IUUC-Tre-122072 Trichoderma reesei 53.99 0.00e+00 902.00
IUUC-Tvi-122546 Trichoderma virens 53.20 0.00e+00 883.00
IUUC-Tae-125488 Triticum aestivum 86.55 0.00e+00 1565.00
IUUC-Tur-126283 Triticum urartu 77.08 0.00e+00 1387.00
IUUC-Tme-127041 Tuber melanosporum 53.80 0.00e+00 915.00
IUUC-Tbe-127770 Tupaia belangeri 60.75 0.00e+00 890.00
IUUC-Ttr-129294 Tursiops truncatus 61.14 0.00e+00 1114.00
IUUC-Uma-129351 Ustilago maydis 51.40 0.00e+00 890.00
IUUC-Vda-129716 Verticillium dahliae 54.37 0.00e+00 914.00
IUUC-Vpa-130037 Vicugna pacos 50.41 2.00e-131 462.00
IUUC-Xtr-132633 Xenopus tropicalis 60.92 0.00e+00 1112.00
IUUC-Xma-133347 Xiphophorus maculatus 62.70 0.00e+00 1111.00
IUUC-Yli-134455 Yarrowia lipolytica 51.40 0.00e+00 813.00
IUUC-Zma-135867 Zea mays 86.61 0.00e+00 1566.00
Created Date 25-Jun-2017

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