iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCJAG00000014766.2	ENSCJAT00000028875.1	ENSCJAP00000027313.1
ENSCJAG00000014766.2	ENSCJAT00000028863.1	ENSCJAP00000027301.1
ENSCJAG00000014766.2	ENSCJAT00000028839.2	ENSCJAP00000027281.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.00e-15	58.5	369	414

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  +  p+ + w Cp C++
   Q: 369  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LDRAPEGK-WSCPHCEK 414
           79*********....9******************.*******7.******86 PP

Organism

Callithrix jacchus

Protein Sequence
(Fasta)

VMEADTVTLW ARSKNYQLRV SFPPGLCRGD RMPDKDDIRL LPSALGVKKR KRGPKKQKEN 60
KPGKPRKRKK RDSEEEFGSE RDYREKSESG GSEYGTGPGR KRRRKHREKK EKKTKRRKKG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGATGGAGG CAGATACTGT GACCCTGTGG GCAAGAAGTA AAAATTACCA GCTGAGGGTT 60
TCTTTTCCTC CAGGACTGTG TAGGGGTGAC AGGATGCCTG GTCATTATCC AAGGAAATGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR023779--Chromodomain_CS
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS00598--CHROMO_1
PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0005730--C:nucleolus
GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0051297--P:centrosome organization
GO:0006333--P:chromatin assembly or disassembly
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004560	Anolis carolinensis	86.29	0.00e+00	2258.00
IUUC-Aly-005645	Arabidopsis lyrata	39.51	3.00e-150	527.00
IUUC-Ath-007406	Arabidopsis thaliana	40.58	5.00e-155	543.00
IUUC-Ame-011352	Astyanax mexicanus	78.68	0.00e+00	2025.00
IUUC-Bta-012868	Bos taurus	88.02	0.00e+00	3099.00
IUUC-Bol-016073	Brassica oleracea	41.18	2.00e-154	541.00
IUUC-Bra-016724	Brassica rapa	41.41	1.00e-155	545.00
IUUC-Cel-018108	Caenorhabditis elegans	58.79	0.00e+00	1305.00
IUUC-Cfa-021055	Canis familiaris	87.70	0.00e+00	3063.00
IUUC-Cpo-021523	Cavia porcellus	88.92	0.00e+00	3107.00
IUUC-Csa-024136	Chlorocebus sabaeus	91.05	0.00e+00	3062.00
IUUC-Cho-024361	Choloepus hoffmanni	78.25	0.00e+00	1228.00
IUUC-Csv-025847	Ciona savignyi	54.84	0.00e+00	1422.00
IUUC-Dor-030167	Dipodomys ordii	88.99	0.00e+00	2508.00
IUUC-Dme-032150	Drosophila melanogaster	63.39	0.00e+00	1413.00
IUUC-Ete-032757	Echinops telfairi	86.12	0.00e+00	2785.00
IUUC-Eeu-034777	Erinaceus europaeus	81.12	0.00e+00	2524.00
IUUC-Fca-036043	Felis catus	89.82	0.00e+00	3083.00
IUUC-Gmo-038957	Gadus morhua	81.14	0.00e+00	1429.00
IUUC-Gac-041375	Gasterosteus aculeatus	67.99	0.00e+00	2440.00
IUUC-Gma-043999	Glycine max	43.34	0.00e+00	740.00
IUUC-Ggo-045538	Gorilla gorilla	90.95	0.00e+00	3058.00
IUUC-Hsa-045916	Homo sapiens	91.04	0.00e+00	3050.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	90.87	0.00e+00	3002.00
IUUC-Lch-050343	Latimeria chalumnae	78.37	0.00e+00	2090.00
IUUC-Laf-053870	Loxodonta africana	90.53	0.00e+00	2729.00
IUUC-Mcc-055499	Macaca mulatta	86.14	0.00e+00	2993.00
IUUC-Meu-056292	Macropus eugenii	85.80	0.00e+00	1254.00
IUUC-Mmr-061223	Microcebus murinus	88.92	0.00e+00	3024.00
IUUC-Mdo-062971	Monodelphis domestica	93.46	0.00e+00	2268.00
IUUC-Mmu-063920	Mus musculus	87.84	0.00e+00	2984.00
IUUC-Mpu-065809	Mustela putorius furo	88.11	0.00e+00	2793.00
IUUC-Mlu-067355	Myotis lucifugus	87.87	0.00e+00	3096.00
IUUC-Nle-069842	Nomascus leucogenys	91.59	0.00e+00	2933.00
IUUC-Opr-070960	Ochotona princeps	87.95	0.00e+00	2940.00
IUUC-Ont-072647	Oreochromis niloticus	69.61	0.00e+00	2296.00
IUUC-Oan-072885	Ornithorhynchus anatinus	65.58	0.00e+00	1563.00
IUUC-Ocu-074438	Oryctolagus cuniculus	88.04	0.00e+00	2940.00
IUUC-Oga-088374	Otolemur garnettii	89.03	0.00e+00	3046.00
IUUC-Oar-089784	Ovis aries	87.03	0.00e+00	3063.00
IUUC-Ptr-090799	Pan troglodytes	91.04	0.00e+00	3058.00
IUUC-Ppa-095213	Physcomitrella patens	41.34	0.00e+00	706.00
IUUC-Pab-098174	Pongo abelii	86.15	0.00e+00	2946.00
IUUC-Pca-100829	Procavia capensis	87.61	0.00e+00	2221.00
IUUC-Rno-104884	Rattus norvegicus	86.69	0.00e+00	2858.00
IUUC-Sha-107233	Sarcophilus harrisii	94.43	0.00e+00	2437.00
IUUC-Sly-110976	Solanum lycopersicum	43.76	0.00e+00	740.00
IUUC-Ssc-115751	Sus scrofa	88.32	0.00e+00	3074.00
IUUC-Tru-118648	Takifugu rubripes	75.81	0.00e+00	2088.00
IUUC-Tsy-119261	Tarsius syrichta	73.78	0.00e+00	1329.00
IUUC-Tni-120039	Tetraodon nigroviridis	75.94	0.00e+00	2053.00
IUUC-Tbe-128117	Tupaia belangeri	90.36	0.00e+00	1325.00
IUUC-Vpa-130209	Vicugna pacos	79.10	0.00e+00	639.00
IUUC-Vvi-130849	Vitis vinifera	43.83	0.00e+00	735.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence