iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-43	146.1	146	184
UBD/Beta-Prp	3.80e-91	306.3	28	221

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH d vt+l f ++ + lvs+s D+ ++vWDl t+++ +
   Q: 146  GHRDQVTDLVFlDGgKKLVSSSKDKFLRVWDLETQHCMQ 184
           8**********97789*******************9986 PP

UBD/Beta-Prp

   S: 105  sgdklvsGshdrtirvwdletgqclee.....tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvs 197
           s+ k v + + + + +w++++g c+++        g + +v++++++  ++l++ G +D+ +r+Wd + g++   + + h+++v+ l +++ g  l+s
   Q: 28   STGKYVLAPALEKVGIWHVRQGVCSKTltpssSRGGPSLAVTSIASSA-SSLVAVGYADGSIRIWDTEKGTCEVNFNS-HKGAVTALRYNKVGSMLAS 123
           567788888999**************6654322223333455555544.5***************************9.******************* PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklk 295
           gs+d++++lwd+  ++ + +l+gh+d+v+++ f++ ++ lvs s+D+ +r+Wdl+++ +++ +++h+s v+sv++ +++++++v+gs+d++++++++k
   Q: 124  GSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDT-DPEERYVVTGSADQELRFYAVK 220
           *************9999**********************************************************.********************98 PP
   S: 296  k 296
           +
   Q: 221  E 221
           7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS 60
RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV NFNSHKGAVT ALRYNKVGSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTAAGACT ATATCGCAAT TTATCAAAAG TAACATTGGA TGTTAGAACC CTGCTGCCTT 60
AACCACTCTA AAACCCTAAA TCCCGCCATC AAAAGCTAGA AGAAGAAGAA GAAGAGAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ath:AT3G21540

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	58.07	0.00e+00	951.00
IUUC-Aml-001245	Ailuropoda melanoleuca	39.32	0.00e+00	627.00
IUUC-Atr-002700	Amborella trichopoda	60.32	0.00e+00	1083.00
IUUC-Apl-004164	Anas platyrhynchos	41.87	3.00e-148	518.00
IUUC-Aca-004765	Anolis carolinensis	39.87	0.00e+00	629.00
IUUC-Aly-006503	Arabidopsis lyrata	94.67	0.00e+00	1689.00
IUUC-Ago-007909	Ashbya gossypii	33.20	2.00e-149	522.00
IUUC-Acl-008238	Aspergillus clavatus	35.83	3.00e-165	575.00
IUUC-Afl-008544	Aspergillus flavus	35.01	2.00e-161	562.00
IUUC-Afu-008868	Aspergillus fumigatus	36.51	1.00e-163	569.00
IUUC-Ani-009367	Aspergillus nidulans	36.24	9.00e-165	573.00
IUUC-Ang-009732	Aspergillus niger	37.31	1.00e-167	583.00
IUUC-Aor-010140	Aspergillus oryzae	35.25	9.00e-163	566.00
IUUC-Ate-010572	Aspergillus terreus	35.93	7.00e-159	554.00
IUUC-Ame-010956	Astyanax mexicanus	43.24	2.00e-122	432.00
IUUC-Bgr-012296	Blumeria graminis	35.74	3.00e-157	548.00
IUUC-Bta-012716	Bos taurus	39.60	0.00e+00	639.00
IUUC-Bci-013699	Botrytis cinerea	35.17	4.00e-158	551.00
IUUC-Bdi-014525	Brachypodium distachyon	59.85	0.00e+00	1025.00
IUUC-Bol-015117	Brassica oleracea	82.72	0.00e+00	1427.00
IUUC-Bra-016869	Brassica rapa	81.64	0.00e+00	1406.00
IUUC-Cel-018570	Caenorhabditis elegans	29.10	4.00e-96	345.00
IUUC-Cja-019425	Callithrix jacchus	39.77	0.00e+00	634.00
IUUC-Cfa-020787	Canis familiaris	39.74	0.00e+00	634.00
IUUC-Cpo-021729	Cavia porcellus	39.88	7.00e-134	470.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	50.74	6.00e-124	437.00
IUUC-Csa-024098	Chlorocebus sabaeus	39.28	0.00e+00	638.00
IUUC-Cho-024495	Choloepus hoffmanni	36.35	3.00e-93	335.00
IUUC-Cin-025245	Ciona intestinalis	36.07	2.00e-106	379.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	35.55	6.00e-154	537.00
IUUC-Cne-026835	Cryptococcus neoformans	40.03	3.00e-109	389.00
IUUC-Cme-027162	Cyanidioschyzon merolae	27.93	2.00e-40	160.00
IUUC-Dre-027874	Danio rerio	40.68	4.00e-180	624.00
IUUC-Dno-028905	Dasypus novemcinctus	39.39	0.00e+00	639.00
IUUC-Dor-030383	Dipodomys ordii	36.33	6.00e-75	275.00
IUUC-Dse-031297	Dothistroma septosporum	34.31	2.00e-148	519.00
IUUC-Dme-031956	Drosophila melanogaster	34.37	1.00e-134	473.00
IUUC-Ete-032608	Echinops telfairi	36.40	1.00e-100	359.00
IUUC-Eca-034181	Equus caballus	39.68	0.00e+00	636.00
IUUC-Eeu-034495	Erinaceus europaeus	39.45	4.00e-176	611.00
IUUC-Fca-035994	Felis catus	41.44	9.00e-175	606.00
IUUC-Fal-036611	Ficedula albicollis	37.93	9.00e-172	597.00
IUUC-Fox-037807	Fusarium oxysporum	36.06	2.00e-158	552.00
IUUC-Fso-038090	Fusarium solani	35.96	1.00e-155	543.00
IUUC-Gmo-039018	Gadus morhua	36.79	3.00e-87	315.00
IUUC-Ggr-039748	Gaeumannomyces graminis	35.81	8.00e-156	543.00
IUUC-Gga-040707	Gallus gallus	39.66	9.00e-175	606.00
IUUC-Gac-042334	Gasterosteus aculeatus	36.87	2.00e-83	303.00
IUUC-Gma-043860	Glycine max	68.15	0.00e+00	1199.00
IUUC-Ggo-045334	Gorilla gorilla	39.68	0.00e+00	630.00
IUUC-Hsa-046996	Homo sapiens	39.66	0.00e+00	632.00
IUUC-Hvu-047381	Hordeum vulgare	53.71	5.00e-165	573.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	39.04	0.00e+00	629.00
IUUC-Kpa-049185	Komagataella pastoris	32.96	5.00e-151	528.00
IUUC-Lch-050098	Latimeria chalumnae	37.43	6.00e-156	544.00
IUUC-Lpe-050710	Leersia perrieri	58.85	0.00e+00	1009.00
IUUC-Loc-052745	Lepisosteus oculatus	39.23	3.00e-171	595.00
IUUC-Lma-053104	Leptosphaeria maculans	34.48	1.00e-157	551.00
IUUC-Laf-054395	Loxodonta africana	39.79	0.00e+00	637.00
IUUC-Mcc-055077	Macaca mulatta	39.49	0.00e+00	634.00
IUUC-Meu-056418	Macropus eugenii	40.92	6.00e-96	345.00
IUUC-Mor-057031	Magnaporthe oryzae	35.74	1.00e-144	506.00
IUUC-Mpo-057420	Magnaporthe poae	35.64	8.00e-154	537.00
IUUC-Mtr-057838	Medicago truncatula	66.81	0.00e+00	1242.00
IUUC-Mla-058854	Melampsora laricipopulina	33.86	3.00e-140	492.00
IUUC-Mga-060120	Meleagris gallopavo	40.27	5.00e-129	454.00
IUUC-Mvi-060407	Microbotryum violaceum	43.16	5.00e-139	488.00
IUUC-Mmr-060635	Microcebus murinus	39.96	0.00e+00	631.00
IUUC-Mdo-063023	Monodelphis domestica	39.98	0.00e+00	643.00
IUUC-Mmu-064103	Mus musculus	40.11	0.00e+00	650.00
IUUC-Mac-065569	Musa acuminata	62.49	0.00e+00	1161.00
IUUC-Mpu-066462	Mustela putorius furo	39.24	0.00e+00	635.00
IUUC-Mlu-067894	Myotis lucifugus	39.53	0.00e+00	635.00
IUUC-Nfi-068321	Neosartorya fischeri	36.26	1.00e-163	569.00
IUUC-Ncr-068661	Neurospora crassa	35.74	5.00e-154	538.00
IUUC-Nle-069409	Nomascus leucogenys	39.66	0.00e+00	634.00
IUUC-Opr-070445	Ochotona princeps	42.04	1.00e-122	433.00
IUUC-Ont-072339	Oreochromis niloticus	40.26	3.00e-174	605.00
IUUC-Oan-073688	Ornithorhynchus anatinus	40.32	1.00e-179	622.00
IUUC-Ocu-074227	Oryctolagus cuniculus	39.45	0.00e+00	636.00
IUUC-Oba-075635	Oryza barthii	59.49	0.00e+00	1008.00
IUUC-Obr-076897	Oryza brachyantha	59.77	0.00e+00	1045.00
IUUC-Ogl-077555	Oryza glaberrima	59.38	0.00e+00	1007.00
IUUC-Ogu-078724	Oryza glumaepatula	59.49	0.00e+00	1007.00
IUUC-Oin-080030	Oryza indica	59.38	0.00e+00	1008.00
IUUC-Olo-080687	Oryza longistaminata	55.99	0.00e+00	959.00
IUUC-Ome-081867	Oryza meridionalis	59.38	0.00e+00	1007.00
IUUC-Oni-082559	Oryza nivara	59.38	0.00e+00	1006.00
IUUC-Opu-083332	Oryza punctata	56.93	0.00e+00	916.00
IUUC-Oru-084455	Oryza rufipogon	59.49	0.00e+00	1010.00
IUUC-Osa-085793	Oryza sativa	59.49	0.00e+00	1010.00
IUUC-Ola-087395	Oryzias latipes	53.56	1.00e-102	367.00
IUUC-Olu-087768	Ostreococcus lucimarinus	43.11	0.00e+00	657.00
IUUC-Oga-088574	Otolemur garnettii	39.43	0.00e+00	634.00
IUUC-Oar-089453	Ovis aries	38.90	0.00e+00	638.00
IUUC-Ptr-090694	Pan troglodytes	39.77	0.00e+00	634.00
IUUC-Pan-092420	Papio anubis	39.20	0.00e+00	627.00
IUUC-Psi-093683	Pelodiscus sinensis	39.49	5.00e-178	617.00
IUUC-Pma-094197	Petromyzon marinus	36.80	5.00e-37	146.00
IUUC-Pno-094783	Phaeosphaeria nodorum	34.79	5.00e-155	541.00
IUUC-Ppa-095208	Physcomitrella patens	51.76	0.00e+00	865.00
IUUC-Pfo-096299	Poecilia formosa	40.74	1.00e-180	626.00
IUUC-Pab-098706	Pongo abelii	39.47	0.00e+00	629.00
IUUC-Pop-099275	Populus trichocarpa	70.71	0.00e+00	1243.00
IUUC-Pca-100796	Procavia capensis	32.56	1.00e-117	416.00
IUUC-Ppe-101861	Prunus persica	70.35	0.00e+00	1287.00
IUUC-Pva-103241	Pteropus vampyrus	38.06	8.00e-170	590.00
IUUC-Pgr-103432	Puccinia graminis	36.46	3.00e-147	515.00
IUUC-Ptt-103742	Puccinia triticina	38.77	8.00e-131	460.00
IUUC-Pte-104069	Pyrenophora teres	34.90	3.00e-150	525.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	34.99	4.00e-158	551.00
IUUC-Rno-105219	Rattus norvegicus	39.30	6.00e-180	624.00
IUUC-Sce-106271	Saccharomyces cerevisiae	35.17	7.00e-153	534.00
IUUC-Sha-107550	Sarcophilus harrisii	39.02	6.00e-180	624.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	35.74	1.00e-156	546.00
IUUC-Spo-108239	Schizosaccharomyces pombe	34.33	2.00e-156	545.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	36.13	3.00e-159	555.00
IUUC-Smo-109477	Selaginella moellendorffii	55.30	0.00e+00	949.00
IUUC-Sit-110000	Setaria italica	58.32	0.00e+00	992.00
IUUC-Sly-111595	Solanum lycopersicum	68.03	0.00e+00	1177.00
IUUC-Stu-112516	Solanum tuberosum	68.50	0.00e+00	1185.00
IUUC-Sar-113195	Sorex araneus	44.27	2.00e-122	432.00
IUUC-Sbi-114465	Sorghum bicolor	57.93	0.00e+00	1025.00
IUUC-Sre-115006	Sporisorium reilianum	33.40	1.00e-146	513.00
IUUC-Ssc-115929	Sus scrofa	40.15	0.00e+00	635.00
IUUC-Tgu-117282	Taeniopygia guttata	38.06	5.00e-171	594.00
IUUC-Tru-118406	Takifugu rubripes	40.53	2.00e-174	605.00
IUUC-Tsy-119170	Tarsius syrichta	38.99	5.00e-179	620.00
IUUC-Tni-119721	Tetraodon nigroviridis	39.45	9.00e-168	583.00
IUUC-Tca-121761	Theobroma cacao	73.13	0.00e+00	1336.00
IUUC-Tre-121908	Trichoderma reesei	36.40	8.00e-160	556.00
IUUC-Tvi-122547	Trichoderma virens	36.83	3.00e-163	568.00
IUUC-Tae-125433	Triticum aestivum	60.13	0.00e+00	1012.00
IUUC-Tur-126811	Triticum urartu	62.27	0.00e+00	1005.00
IUUC-Tme-126987	Tuber melanosporum	38.07	2.00e-174	605.00
IUUC-Tbe-127315	Tupaia belangeri	43.24	3.00e-106	379.00
IUUC-Ttr-129165	Tursiops truncatus	35.06	2.00e-141	496.00
IUUC-Uma-129651	Ustilago maydis	34.57	1.00e-149	523.00
IUUC-Vda-129973	Verticillium dahliae	35.63	3.00e-151	529.00
IUUC-Vpa-130163	Vicugna pacos	34.00	2.00e-65	243.00
IUUC-Vvi-131402	Vitis vinifera	71.71	0.00e+00	1277.00
IUUC-Xtr-132296	Xenopus tropicalis	39.49	2.00e-177	615.00
IUUC-Xma-133028	Xiphophorus maculatus	40.89	0.00e+00	628.00
IUUC-Yli-134484	Yarrowia lipolytica	36.24	1.00e-152	533.00
IUUC-Zma-135938	Zea mays	56.94	0.00e+00	1031.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence