iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sha-106689

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01087170

Gene Name

VPS41

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000003647.1	ENSSHAT00000004180.1	ENSSHAP00000004139.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	93.23	0.00e+00	1624.00	IUUC-Hsa-047030

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

RLLQVTHSTE MMVCPCPSQE EESEEEPKLR YERLSNGVTE ILQKDAASCL TVHEKFLALG 60
THYGKVYLLD VQGNITQKFD ISPVKINQIS LDESGEHMGV CSEDGKVQVF GLYSGEEFHE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGCTCCTTC AAGTCACTCA CAGCACTGAG ATGATGGTTT GTCCCTGTCC TTCACAGGAG 60
GAAGAAAGCG AAGAGGAGCC CAAGCTCAGG TACGAGCGGC TCTCCAATGG GGTGACGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR000547--Clathrin_H-chain/VPS_repeat
IPR011990--TPR-like_helical_dom
IPR016902--VPS41
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50236--CHCR
PS50089--ZF_RING_2

Pfam

PF00637--Clathrin

SMART

SM00299--CLH

Gene Ontology

GO:0030123--C:AP-3 adaptor complex
GO:0071439--C:clathrin complex
GO:0030136--C:clathrin-coated vesicle
GO:0005769--C:early endosome
GO:0030897--C:HOPS complex
GO:0031902--C:late endosome membrane
GO:0005765--C:lysosomal membrane
GO:0015630--C:microtubule cytoskeleton
GO:0008270--F:zinc ion binding
GO:0034058--P:endosomal vesicle fusion
GO:0008333--P:endosome to lysosome transport
GO:0006886--P:intracellular protein transport
GO:1902774--P:late endosome to lysosome transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000207	Aegilops tauschii	33.60	8.00e-133	468.00
IUUC-Aml-001435	Ailuropoda melanoleuca	92.62	0.00e+00	1610.00
IUUC-Atr-002975	Amborella trichopoda	36.20	6.00e-157	548.00
IUUC-Apl-003254	Anas platyrhynchos	90.45	0.00e+00	1576.00
IUUC-Aca-005067	Anolis carolinensis	87.30	0.00e+00	1529.00
IUUC-Aly-005839	Arabidopsis lyrata	34.98	4.00e-154	538.00
IUUC-Ath-006625	Arabidopsis thaliana	34.87	2.00e-154	539.00
IUUC-Ago-007960	Ashbya gossypii	25.03	8.00e-68	251.00
IUUC-Acl-008174	Aspergillus clavatus	30.28	7.00e-56	213.00
IUUC-Afl-008524	Aspergillus flavus	41.67	3.00e-38	154.00
IUUC-Afu-009054	Aspergillus fumigatus	28.76	4.00e-58	220.00
IUUC-Ani-009250	Aspergillus nidulans	28.26	3.00e-47	184.00
IUUC-Ang-009665	Aspergillus niger	29.14	3.00e-57	217.00
IUUC-Aor-010230	Aspergillus oryzae	36.18	3.00e-38	154.00
IUUC-Ate-010464	Aspergillus terreus	41.05	2.00e-40	161.00
IUUC-Ame-011311	Astyanax mexicanus	66.87	0.00e+00	1129.00
IUUC-Bgr-012099	Blumeria graminis	26.55	5.00e-50	193.00
IUUC-Bta-013327	Bos taurus	92.74	0.00e+00	1614.00
IUUC-Bci-013660	Botrytis cinerea	26.64	5.00e-50	193.00
IUUC-Bdi-014641	Brachypodium distachyon	34.94	1.00e-144	507.00
IUUC-Bol-015685	Brassica oleracea	34.44	5.00e-153	535.00
IUUC-Bra-016918	Brassica rapa	34.47	4.00e-151	528.00
IUUC-Cel-018385	Caenorhabditis elegans	27.70	1.00e-91	331.00
IUUC-Cja-018994	Callithrix jacchus	92.61	0.00e+00	1610.00
IUUC-Cfa-020405	Canis familiaris	92.74	0.00e+00	1610.00
IUUC-Cpo-022163	Cavia porcellus	92.26	0.00e+00	1598.00
IUUC-Cre-022626	Chlamydomonas reinhardtii	27.61	2.00e-40	161.00
IUUC-Csa-023134	Chlorocebus sabaeus	93.23	0.00e+00	1622.00
IUUC-Cho-024913	Choloepus hoffmanni	82.08	0.00e+00	1330.00
IUUC-Cin-025239	Ciona intestinalis	43.66	0.00e+00	702.00
IUUC-Cgl-026706	Colletotrichum gloeosporioides	29.66	1.00e-53	205.00
IUUC-Cne-026799	Cryptococcus neoformans	36.63	6.00e-163	568.00
IUUC-Cme-027200	Cyanidioschyzon merolae	24.44	3.00e-09	57.40
IUUC-Dre-028115	Danio rerio	80.65	0.00e+00	1413.00
IUUC-Dor-030947	Dipodomys ordii	86.80	0.00e+00	1485.00
IUUC-Dse-031544	Dothistroma septosporum	27.72	5.00e-45	176.00
IUUC-Dme-031830	Drosophila melanogaster	37.97	2.00e-154	539.00
IUUC-Ete-033051	Echinops telfairi	91.47	1.00e-140	493.00
IUUC-Eca-033501	Equus caballus	93.35	0.00e+00	1622.00
IUUC-Eeu-034555	Erinaceus europaeus	88.50	0.00e+00	856.00
IUUC-Fca-035809	Felis catus	92.38	0.00e+00	1608.00
IUUC-Fal-037056	Ficedula albicollis	90.45	0.00e+00	1576.00
IUUC-Fox-037949	Fusarium oxysporum	28.04	1.00e-48	189.00
IUUC-Fso-038282	Fusarium solani	27.34	4.00e-45	177.00
IUUC-Gmo-038540	Gadus morhua	79.69	0.00e+00	1379.00
IUUC-Ggr-039733	Gaeumannomyces graminis	26.47	8.00e-55	209.00
IUUC-Gga-040446	Gallus gallus	90.45	0.00e+00	1578.00
IUUC-Gac-041462	Gasterosteus aculeatus	81.02	0.00e+00	1396.00
IUUC-Gma-043148	Glycine max	36.28	1.00e-160	560.00
IUUC-Hsa-047030	Homo sapiens	93.23	0.00e+00	1624.00
IUUC-Hvu-047693	Hordeum vulgare	34.82	2.00e-144	506.00
IUUC-Itr-048318	Ictidomys tridecemlineatus	92.87	0.00e+00	1593.00
IUUC-Kpa-049224	Komagataella pastoris	24.39	1.00e-55	211.00
IUUC-Lch-049444	Latimeria chalumnae	79.73	0.00e+00	1357.00
IUUC-Lpe-050942	Leersia perrieri	32.91	1.00e-125	444.00
IUUC-Loc-052260	Lepisosteus oculatus	80.07	0.00e+00	1405.00
IUUC-Lma-053173	Leptosphaeria maculans	27.29	3.00e-49	190.00
IUUC-Laf-054185	Loxodonta africana	92.87	0.00e+00	1615.00
IUUC-Mcc-054816	Macaca mulatta	92.99	0.00e+00	1622.00
IUUC-Meu-056483	Macropus eugenii	77.18	0.00e+00	679.00
IUUC-Mor-056979	Magnaporthe oryzae	27.39	3.00e-52	201.00
IUUC-Mpo-057312	Magnaporthe poae	26.47	2.00e-54	207.00
IUUC-Mtr-057630	Medicago truncatula	35.79	8.00e-157	547.00
IUUC-Mla-058930	Melampsora laricipopulina	32.18	6.00e-26	110.00
IUUC-Mga-059942	Meleagris gallopavo	90.10	0.00e+00	1566.00
IUUC-Mvi-060386	Microbotryum violaceum	36.19	1.00e-158	553.00
IUUC-Mmr-060640	Microcebus murinus	93.35	0.00e+00	1627.00
IUUC-Mdo-062934	Monodelphis domestica	88.72	0.00e+00	1469.00
IUUC-Mmu-063488	Mus musculus	92.50	0.00e+00	1619.00
IUUC-Mac-064975	Musa acuminata	36.04	4.00e-151	528.00
IUUC-Mpu-065777	Mustela putorius furo	93.23	0.00e+00	1620.00
IUUC-Mlu-068052	Myotis lucifugus	92.88	0.00e+00	1611.00
IUUC-Nfi-068436	Neosartorya fischeri	29.20	4.00e-59	223.00
IUUC-Ncr-068840	Neurospora crassa	29.70	2.00e-58	221.00
IUUC-Nle-070063	Nomascus leucogenys	93.11	0.00e+00	1616.00
IUUC-Opr-070385	Ochotona princeps	83.07	0.00e+00	1399.00
IUUC-Ont-072367	Oreochromis niloticus	80.43	0.00e+00	1385.00
IUUC-Oan-073085	Ornithorhynchus anatinus	89.86	0.00e+00	1557.00
IUUC-Ocu-074672	Oryctolagus cuniculus	92.99	0.00e+00	1613.00
IUUC-Oba-075574	Oryza barthii	35.06	3.00e-149	522.00
IUUC-Obr-076203	Oryza brachyantha	35.52	8.00e-150	524.00
IUUC-Ogl-077909	Oryza glaberrima	35.06	3.00e-149	522.00
IUUC-Ogu-078053	Oryza glumaepatula	34.66	2.00e-146	513.00
IUUC-Oin-079700	Oryza indica	35.06	4.00e-149	522.00
IUUC-Olo-080707	Oryza longistaminata	35.77	3.00e-155	542.00
IUUC-Oni-082754	Oryza nivara	34.98	5.00e-148	518.00
IUUC-Opu-083854	Oryza punctata	34.98	3.00e-148	519.00
IUUC-Oru-085071	Oryza rufipogon	34.77	2.00e-147	516.00
IUUC-Osa-085370	Oryza sativa	35.06	3.00e-149	522.00
IUUC-Ola-086362	Oryzias latipes	78.33	0.00e+00	1351.00
IUUC-Oga-088078	Otolemur garnettii	92.94	0.00e+00	1604.00
IUUC-Oar-089679	Ovis aries	92.87	0.00e+00	1616.00
IUUC-Ptr-091680	Pan troglodytes	93.23	0.00e+00	1624.00
IUUC-Pan-092816	Papio anubis	93.93	0.00e+00	1162.00
IUUC-Psi-093890	Pelodiscus sinensis	89.48	0.00e+00	1563.00
IUUC-Pma-094654	Petromyzon marinus	65.16	0.00e+00	1113.00
IUUC-Pno-095071	Phaeosphaeria nodorum	27.34	2.00e-56	214.00
IUUC-Ppa-095198	Physcomitrella patens	34.32	4.00e-142	498.00
IUUC-Pfo-097465	Poecilia formosa	79.20	0.00e+00	1372.00
IUUC-Pab-098686	Pongo abelii	93.11	0.00e+00	1622.00
IUUC-Pop-100066	Populus trichocarpa	35.58	8.00e-157	547.00
IUUC-Pca-100990	Procavia capensis	83.68	0.00e+00	1412.00
IUUC-Ppe-101500	Prunus persica	36.70	2.00e-160	559.00
IUUC-Pva-102809	Pteropus vampyrus	93.23	0.00e+00	1619.00
IUUC-Pgr-103404	Puccinia graminis	32.93	3.00e-142	499.00
IUUC-Ptt-103952	Puccinia triticina	32.17	2.00e-132	466.00
IUUC-Pte-104216	Pyrenophora teres	27.74	3.00e-56	214.00
IUUC-Rno-105949	Rattus norvegicus	93.34	0.00e+00	1443.00
IUUC-Sce-106462	Saccharomyces cerevisiae	25.21	9.00e-58	218.00
IUUC-Sja-107696	Schizosaccharomyces japonicus	29.64	1.00e-92	334.00
IUUC-Spo-108173	Schizosaccharomyces pombe	29.05	5.00e-103	369.00
IUUC-Smo-109505	Selaginella moellendorffii	36.66	2.00e-146	513.00
IUUC-Sit-110176	Setaria italica	34.67	1.00e-151	530.00
IUUC-Sly-111671	Solanum lycopersicum	34.11	2.00e-157	550.00
IUUC-Sar-113073	Sorex araneus	79.72	0.00e+00	1244.00
IUUC-Sbi-114139	Sorghum bicolor	35.58	1.00e-146	513.00
IUUC-Sre-115158	Sporisorium reilianum	36.45	8.00e-167	581.00
IUUC-Ssc-115894	Sus scrofa	91.66	0.00e+00	1588.00
IUUC-Tgu-117481	Taeniopygia guttata	90.45	0.00e+00	1580.00
IUUC-Tru-118468	Takifugu rubripes	78.02	0.00e+00	1356.00
IUUC-Tni-120478	Tetraodon nigroviridis	78.27	0.00e+00	1353.00
IUUC-Tca-121780	Theobroma cacao	34.97	5.00e-157	548.00
IUUC-Tre-121900	Trichoderma reesei	28.70	2.00e-55	211.00
IUUC-Tvi-122343	Trichoderma virens	28.35	4.00e-56	213.00
IUUC-Tae-123578	Triticum aestivum	35.47	2.00e-147	516.00
IUUC-Tur-126430	Triticum urartu	34.87	2.00e-139	490.00
IUUC-Tme-127007	Tuber melanosporum	27.98	8.00e-58	219.00
IUUC-Tbe-128073	Tupaia belangeri	84.64	0.00e+00	1443.00
IUUC-Ttr-128879	Tursiops truncatus	93.11	0.00e+00	1600.00
IUUC-Uma-129356	Ustilago maydis	35.36	7.00e-167	581.00
IUUC-Vda-129676	Verticillium dahliae	29.13	4.00e-54	206.00
IUUC-Vvi-131744	Vitis vinifera	35.05	4.00e-155	541.00
IUUC-Xtr-132093	Xenopus tropicalis	80.17	0.00e+00	1385.00
IUUC-Xma-133199	Xiphophorus maculatus	79.93	0.00e+00	1370.00
IUUC-Yli-134385	Yarrowia lipolytica	26.93	5.00e-72	266.00
IUUC-Zma-135567	Zea mays	35.34	2.00e-144	506.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence