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Tag Content
UUCD2 ID IUUC-Mdo-062225
UUCD1 version UUC-MoD-00400
Ensembl Protein ID ENSMODP00000022998.3
UniProt Accession F6XBK7; F6XBK7_MONDO
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMODG00000018442.3 ENSMODT00000023407.3 ENSMODP00000022998.3
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/MIU 51.11 1.00e-112 404.00 IUUC-Hsa-046424
UBD/Alpha-Helix/UMI 51.11 1.00e-112 404.00 IUUC-Hsa-046424
E3 activity/RING/RING 51.11 1.00e-112 404.00 IUUC-Hsa-046424
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Monodelphis domestica
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MASTPNVVLP FSDCLCQICT DILIEPVTLP CSHTLCNSCF QLTVEKANLC CPFCRRRVSS 60
WARQHARENT LINMELWDKI QKSYPEKCKK KTTEQDLDGD DVDMYQPHRT LSQPGELRRE 120
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Protein Fasta Sequence



>IUUC-Mdo-062225|UBD,MIU;UBD,UMI;E3,RING|Monodelphis domestica
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Nucleotide Sequence
(Fasta)
GGAAAACTGG CCCTAGCTTA ACGCGGAAGA GGAGATAAAC AGAAAGCAAA CCCGGAGGCG 60
GGATAATGAC GTTATGGCGG GAACTTCTCA GTCCTGGGAC CAAGGCGCTC CGAAAAGGTG 120
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Nucleotide Fasta Sequence



>IUUC-Mdo-062225|UBD,MIU;UBD,UMI;E3,RING|Monodelphis domestica
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG mdo:100022084
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 53.94 3.00e-114 405.00
IUUC-Atr-002992 Amborella trichopoda 39.13 4.00e-11 62.00
IUUC-Apl-003963 Anas platyrhynchos 44.14 8.00e-62 231.00
IUUC-Aca-004420 Anolis carolinensis 67.24 1.00e-45 177.00
IUUC-Ame-011521 Astyanax mexicanus 51.28 1.00e-36 147.00
IUUC-Bta-013002 Bos taurus 52.91 5.00e-114 404.00
IUUC-Cja-019945 Callithrix jacchus 51.46 1.00e-109 390.00
IUUC-Cfa-020533 Canis familiaris 54.03 3.00e-117 415.00
IUUC-Cpo-021643 Cavia porcellus 48.47 2.00e-91 329.00
IUUC-Csa-023638 Chlorocebus sabaeus 51.11 8.00e-116 410.00
IUUC-Cho-024319 Choloepus hoffmanni 50.34 1.00e-107 383.00
IUUC-Cin-025679 Ciona intestinalis 40.16 9.00e-23 100.00
IUUC-Csv-026052 Ciona savignyi 38.71 5.00e-20 90.90
IUUC-Cne-026875 Cryptococcus neoformans 28.57 1.00e-06 48.10
IUUC-Dre-028519 Danio rerio 52.14 1.00e-37 150.00
IUUC-Dno-029294 Dasypus novemcinctus 54.27 5.00e-119 421.00
IUUC-Ete-032714 Echinops telfairi 61.02 2.00e-41 163.00
IUUC-Eca-033343 Equus caballus 55.76 1.00e-121 430.00
IUUC-Eeu-034633 Erinaceus europaeus 37.80 1.00e-11 63.50
IUUC-Fca-036251 Felis catus 54.56 7.00e-123 434.00
IUUC-Fal-037048 Ficedula albicollis 44.46 3.00e-72 266.00
IUUC-Gmo-039400 Gadus morhua 44.17 5.00e-30 122.00
IUUC-Gga-040444 Gallus gallus 42.53 4.00e-72 265.00
IUUC-Gac-041735 Gasterosteus aculeatus 47.93 6.00e-33 134.00
IUUC-Ggo-044940 Gorilla gorilla 45.74 4.00e-62 232.00
IUUC-Hsa-046424 Homo sapiens 51.11 2.00e-105 375.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 55.02 2.00e-108 386.00
IUUC-Lch-050649 Latimeria chalumnae 40.69 3.00e-62 232.00
IUUC-Loc-051847 Lepisosteus oculatus 33.53 7.00e-46 177.00
IUUC-Laf-053938 Loxodonta africana 52.59 5.00e-124 437.00
IUUC-Mcc-055360 Macaca mulatta 50.85 1.00e-109 390.00
IUUC-Meu-056684 Macropus eugenii 66.90 0.00e+00 634.00
IUUC-Mga-059699 Meleagris gallopavo 43.10 3.00e-71 263.00
IUUC-Mmr-060779 Microcebus murinus 56.26 2.00e-132 466.00
IUUC-Mmu-064239 Mus musculus 46.98 7.00e-84 304.00
IUUC-Mpu-066141 Mustela putorius furo 54.87 2.00e-124 439.00
IUUC-Mlu-067945 Myotis lucifugus 55.31 1.00e-119 423.00
IUUC-Nle-069769 Nomascus leucogenys 51.97 4.00e-108 385.00
IUUC-Opr-070905 Ochotona princeps 44.67 2.00e-90 326.00
IUUC-Ont-071477 Oreochromis niloticus 50.44 6.00e-34 138.00
IUUC-Oan-073531 Ornithorhynchus anatinus 45.67 4.00e-68 251.00
IUUC-Ocu-073832 Oryctolagus cuniculus 51.89 4.00e-108 385.00
IUUC-Ola-086478 Oryzias latipes 50.00 4.00e-34 136.00
IUUC-Oga-088318 Otolemur garnettii 54.53 3.00e-118 418.00
IUUC-Oar-089647 Ovis aries 52.31 1.00e-112 400.00
IUUC-Ptr-090516 Pan troglodytes 51.29 1.00e-109 390.00
IUUC-Pan-092302 Papio anubis 51.11 4.00e-111 395.00
IUUC-Psi-093604 Pelodiscus sinensis 43.82 2.00e-80 293.00
IUUC-Pfo-096441 Poecilia formosa 49.18 3.00e-37 149.00
IUUC-Pab-097729 Pongo abelii 50.60 2.00e-105 376.00
IUUC-Pca-100552 Procavia capensis 46.84 6.00e-67 248.00
IUUC-Pva-102780 Pteropus vampyrus 54.70 3.00e-123 435.00
IUUC-Rno-105461 Rattus norvegicus 47.84 3.00e-98 352.00
IUUC-Sha-106809 Sarcophilus harrisii 77.70 0.00e+00 743.00
IUUC-Sly-111317 Solanum lycopersicum 30.93 2.00e-12 66.60
IUUC-Stu-112783 Solanum tuberosum 28.87 2.00e-11 63.50
IUUC-Sar-113579 Sorex araneus 48.53 1.00e-98 353.00
IUUC-Tgu-117187 Taeniopygia guttata 66.49 1.00e-50 192.00
IUUC-Tru-118182 Takifugu rubripes 49.58 1.00e-34 140.00
IUUC-Tsy-119217 Tarsius syrichta 42.44 9.00e-27 114.00
IUUC-Tni-120205 Tetraodon nigroviridis 49.14 2.00e-34 139.00
IUUC-Tvi-122557 Trichoderma virens 33.70 7.00e-06 45.10
IUUC-Tbe-127622 Tupaia belangeri 52.91 5.00e-118 418.00
IUUC-Ttr-128988 Tursiops truncatus 54.11 5.00e-118 418.00
IUUC-Vpa-130302 Vicugna pacos 49.86 7.00e-68 251.00
IUUC-Xtr-132196 Xenopus tropicalis 38.74 2.00e-68 253.00
Created Date 25-Jun-2017

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