iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121595

Ensembl Protein ID

EOY02356

UniProt Accession

A0A061ED66; A0A061ED66_THECC

Genbank Protein ID

EOY02356.1; EOY02357.1

Protein Name

Methyl-CpG-binding domain-containing protein 9, putative isoform 1

Genbank Nucleotide ID

CM001882; CM001882

Gene Name

TCM_016863

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_016863	EOY02356	EOY02356
TCM_016863	EOY02358	EOY02358

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.30e-13	50.5	1289	1335

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vC+vCg  ++d+ s++ C+ C+  +H  Cl+++     p+ + w+Cp+C 
   Q: 1289 VCKVCGIDKDDD-SVLLCDTCDAEYHTYCLNPP-LARIPEGN-WYCPSCV 1335
           8*****999977.7*******************.*******6.******6 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MELTDSNDSK PETRSPLGID LNEIPSSSFN ETLPDSDSAE PDSFSIVRAI HENPDPALGE 60
PAGVPVGKEE EPCGACGTAA AAGGGLVVVC DGCERGFHLA CAGISGRLSA AEEWVCAECV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CACGACTCGG ATAAAAACAA ACAAAATGGA ACTCACCGAT TCGAACGATT CAAAGCCCGA 60
GACTCGTTCA CCTCTCGGCA TCGATCTAAA CGAGATCCCT TCTTCTTCTT TTAACGAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001487--Bromodomain
IPR016177--DNA-bd_dom
IPR003889--FYrich_C
IPR003888--FYrich_N
IPR001739--Methyl_CpG_DNA-bd
IPR028942--WHIM1_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50014--BROMODOMAIN_2
PS51543--FYRC
PS51542--FYRN
PS50982--MBD
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00439--Bromodomain
PF05965--FYRC
PF01429--MBD
PF00628--PHD
PF15612--WHIM1

SMART

SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0009506--C:plasmodesma
GO:0003677--F:DNA binding
GO:0004402--F:histone acetyltransferase activity
GO:0008270--F:zinc ion binding
GO:0043966--P:histone H3 acetylation
GO:0043967--P:histone H4 acetylation
GO:0048573--P:photoperiodism, flowering
GO:0006355--P:regulation of transcription, DNA-templated
GO:0010223--P:secondary shoot formation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000077	Aegilops tauschii	41.39	1.00e-176	613.00
IUUC-Atr-002838	Amborella trichopoda	45.57	0.00e+00	1083.00
IUUC-Aly-006097	Arabidopsis lyrata	49.04	0.00e+00	1770.00
IUUC-Ath-007218	Arabidopsis thaliana	48.35	0.00e+00	1737.00
IUUC-Bdi-014742	Brachypodium distachyon	38.50	6.00e-175	607.00
IUUC-Bol-015336	Brassica oleracea	46.14	0.00e+00	1692.00
IUUC-Bra-017998	Brassica rapa	46.92	0.00e+00	1707.00
IUUC-Cne-026801	Cryptococcus neoformans	53.19	3.00e-14	73.20
IUUC-Fox-037887	Fusarium oxysporum	48.89	8.00e-10	58.20
IUUC-Ggr-039838	Gaeumannomyces graminis	54.35	2.00e-11	63.20
IUUC-Gma-042778	Glycine max	53.25	0.00e+00	2055.00
IUUC-Hvu-047583	Hordeum vulgare	34.52	2.00e-143	502.00
IUUC-Lpe-050785	Leersia perrieri	38.08	0.00e+00	1145.00
IUUC-Mor-056964	Magnaporthe oryzae	50.00	6.00e-10	58.50
IUUC-Mtr-058285	Medicago truncatula	50.73	0.00e+00	1941.00
IUUC-Mga-059236	Meleagris gallopavo	54.00	9.00e-14	72.80
IUUC-Mac-065069	Musa acuminata	41.15	0.00e+00	1084.00
IUUC-Oba-075854	Oryza barthii	40.08	0.00e+00	1286.00
IUUC-Obr-076343	Oryza brachyantha	39.27	0.00e+00	1249.00
IUUC-Ogl-077886	Oryza glaberrima	39.81	0.00e+00	672.00
IUUC-Ogu-078887	Oryza glumaepatula	40.08	0.00e+00	1285.00
IUUC-Olo-080668	Oryza longistaminata	40.48	0.00e+00	1285.00
IUUC-Ome-081800	Oryza meridionalis	40.33	0.00e+00	1279.00
IUUC-Oni-082593	Oryza nivara	40.08	0.00e+00	1285.00
IUUC-Opu-083363	Oryza punctata	40.17	0.00e+00	1278.00
IUUC-Oru-084298	Oryza rufipogon	40.13	0.00e+00	1281.00
IUUC-Osa-085487	Oryza sativa	38.26	4.00e-178	617.00
IUUC-Olu-087752	Ostreococcus lucimarinus	42.55	2.00e-07	47.40
IUUC-Ppa-095893	Physcomitrella patens	36.48	3.00e-108	387.00
IUUC-Ppe-101198	Prunus persica	59.23	0.00e+00	2067.00
IUUC-Sit-110633	Setaria italica	39.57	0.00e+00	1189.00
IUUC-Tae-123821	Triticum aestivum	38.45	0.00e+00	1137.00
IUUC-Tur-126242	Triticum urartu	42.38	2.00e-177	617.00
IUUC-Vda-129876	Verticillium dahliae	50.00	3.00e-10	59.30
IUUC-Vvi-130929	Vitis vinifera	54.88	0.00e+00	1796.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence