iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095634

Ensembl Protein ID

PP1S3_333V6.1

UniProt Accession

A9RDQ0; A9RDQ0_PHYPA

Genbank Protein ID

EDQ83043.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

DS544892

Gene Name

PHYPADRAFT_112018

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S3_333V6	PP1S3_333V6.1	PP1S3_333V6.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-06	27.4	93	120

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikv 27
           Ht +++++af  + +l++s+sdDgt  v
   Q: 93   HTKDIRAVAFhKTyPLFASCSDDGTTSV 120
           99********95569*********9776 PP

Organism

Physcomitrella patens

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MSQNPFRKHH GRVVQVLFHP QRPFLFVATK MHVRVYNLAK QQLSKKLMTG LNEISSMAIH 60
SGGDNLILGS QESKMVWFDM DLSTKPYKAF KNHTKDIRAV AFHKTYPLFA SCSDDGTTSV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTCAAA ATCCATTCCG AAAACACCAT GGACGCGTAG TGCAAGTGTT ATTCCATCCT 60
CAACGCCCTT TTCTGTTTGT CGCAACAAAA ATGCACGTGC GGGTCTATAA TTTGGCCAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ppp:PHYPADRAFT_112018

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002747	Amborella trichopoda	68.39	3.00e-71	259.00
IUUC-Ame-011767	Astyanax mexicanus	62.29	9.00e-65	239.00
IUUC-Cme-027242	Cyanidioschyzon merolae	50.29	1.00e-52	200.00
IUUC-Gga-040631	Gallus gallus	64.57	2.00e-65	241.00
IUUC-Mga-059645	Meleagris gallopavo	57.28	4.00e-31	127.00
IUUC-Oar-090058	Ovis aries	57.49	4.00e-54	204.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence