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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-105338
UUCD1 version UUC-RaN-00707
Ensembl Protein ID ENSRNOP00000059852.1
UniProt Accession Q4KLN8; RNF8_RAT
Genbank Protein ID AAH99079.1
Protein Name E3 ubiquitin-protein ligase RNF8; RING finger protein 8; RING-type E3 ubiquitin transferase RNF8
Genbank Nucleotide ID BC099079
Gene Name Rnf8
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000047171.2 ENSRNOT00000065629.2 ENSRNOP00000059852.1
ENSRNOG00000047171.2 ENSRNOT00000081715.1 ENSRNOP00000074480.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNATRANSFACRAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/RING 8.00e-07 29.9 405 443
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C+iC e f + ++l+C H f+ C+ w +++ CP+Cr
   Q: 405 CIICSEYFIE-AVTLNCAHSFCSFCISEW------MKRKVECPICR 443
    ********99.899***************......**********8 PP
   

Organism Rattus norvegicus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites (By similarity). Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity (By similarity). In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2 (By similarity).
E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites (By similarity). Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity (By similarity). In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2 (By similarity).
Protein Sequence
(Fasta)
MGEPDPLVSG QLAARRSWCL RRLGMDREWL QLEAGSEVTI GRGFSVTYQL ISKVCPLMIS 60
RNHCVLKQNP EGQWTIMDNK SLNGVWLNRE RLAPLQGYCI RKGDHIQLGV PLESKEHAEY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-105338|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCCGCCGCCG TCGCCCTCCC GCTGCGCACG CGCAATGCCT GCCTTCCTAG CCCAGGGGCG 60
GGCCCGCGCT CGCCGCGCCA CCGATCTCCG GGCGATTGCT TCTGTCTGGT GTTTAGGTAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-105338|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0156--Chromatin regulator
KW-0158--Chromosome
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0498--Mitosis
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0779--Telomere
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000253--FHA_dom
IPR017335--RNF8
IPR008984--SMAD_FHA_domain
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50006--FHA_DOMAIN
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00498--FHA
PF00097--zf-C3HC4

SMART

SM00240--FHA
SM00184--RING

Gene Ontology

GO:0000781--C:chromosome, telomeric region
GO:0005829--C:cytosol
GO:0030496--C:midbody
GO:0005634--C:nucleus
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0003682--F:chromatin binding
GO:0042393--F:histone binding
GO:0042803--F:protein homodimerization activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0051301--P:cell division
GO:0006974--P:cellular response to DNA damage stimulus
GO:0006302--P:double-strand break repair
GO:0006303--P:double-strand break repair via nonhomologous end joining
GO:0043486--P:histone exchange
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0033522--P:histone H2A ubiquitination
GO:0033523--P:histone H2B ubiquitination
GO:0045190--P:isotype switching
GO:0007067--P:mitotic nuclear division
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0051865--P:protein autoubiquitination
GO:0070936--P:protein K48-linked ubiquitination
GO:0070534--P:protein K63-linked ubiquitination
GO:0010212--P:response to ionizing radiation
GO:0007286--P:spermatid development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG rno:361815
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002124 Ailuropoda melanoleuca 75.36 4.00e-165 574.00
IUUC-Apl-003664 Anas platyrhynchos 74.44 3.00e-36 143.00
IUUC-Aca-005036 Anolis carolinensis 56.63 2.00e-113 402.00
IUUC-Ame-011537 Astyanax mexicanus 42.62 9.00e-84 304.00
IUUC-Bta-013297 Bos taurus 73.92 2.00e-156 545.00
IUUC-Cja-019201 Callithrix jacchus 72.67 1.00e-153 536.00
IUUC-Cfa-021041 Canis familiaris 77.16 2.00e-173 602.00
IUUC-Csa-024133 Chlorocebus sabaeus 72.90 1.00e-166 579.00
IUUC-Cho-024624 Choloepus hoffmanni 67.91 9.00e-110 390.00
IUUC-Dre-027918 Danio rerio 41.92 4.00e-77 282.00
IUUC-Dno-029774 Dasypus novemcinctus 74.69 2.00e-171 595.00
IUUC-Dor-030190 Dipodomys ordii 67.90 5.00e-133 467.00
IUUC-Ete-032301 Echinops telfairi 61.36 1.00e-116 413.00
IUUC-Eca-033607 Equus caballus 78.00 1.00e-156 545.00
IUUC-Eeu-034888 Erinaceus europaeus 73.86 4.00e-105 374.00
IUUC-Fca-036075 Felis catus 74.28 9.00e-171 593.00
IUUC-Fal-037569 Ficedula albicollis 57.81 9.00e-104 370.00
IUUC-Gmo-038588 Gadus morhua 40.30 8.00e-69 254.00
IUUC-Gga-040777 Gallus gallus 56.18 2.00e-106 379.00
IUUC-Gac-042463 Gasterosteus aculeatus 40.64 2.00e-61 230.00
IUUC-Ggo-045269 Gorilla gorilla 72.90 2.00e-167 582.00
IUUC-Hsa-046249 Homo sapiens 72.90 5.00e-167 580.00
IUUC-Itr-048314 Ictidomys tridecemlineatus 76.49 3.00e-178 618.00
IUUC-Lch-049805 Latimeria chalumnae 50.00 4.00e-100 358.00
IUUC-Loc-052377 Lepisosteus oculatus 48.41 4.00e-87 315.00
IUUC-Mcc-055344 Macaca mulatta 72.90 3.00e-167 581.00
IUUC-Meu-055950 Macropus eugenii 59.83 6.00e-111 394.00
IUUC-Mla-059052 Melampsora laricipopulina 35.38 7.00e-09 53.90
IUUC-Mga-060049 Meleagris gallopavo 54.58 2.00e-100 359.00
IUUC-Mmr-061431 Microcebus murinus 74.02 4.00e-160 557.00
IUUC-Mdo-062016 Monodelphis domestica 64.46 1.00e-107 385.00
IUUC-Mmu-063235 Mus musculus 90.35 0.00e+00 801.00
IUUC-Mpu-066449 Mustela putorius furo 76.80 2.00e-180 625.00
IUUC-Mlu-067588 Myotis lucifugus 72.26 3.00e-157 548.00
IUUC-Nle-069192 Nomascus leucogenys 72.48 3.00e-166 578.00
IUUC-Opr-070300 Ochotona princeps 59.49 5.00e-128 451.00
IUUC-Ont-071998 Oreochromis niloticus 43.10 3.00e-67 249.00
IUUC-Oan-073610 Ornithorhynchus anatinus 64.78 1.00e-61 229.00
IUUC-Ocu-074603 Oryctolagus cuniculus 72.22 2.00e-158 552.00
IUUC-Ola-086681 Oryzias latipes 40.45 2.00e-69 256.00
IUUC-Oga-088183 Otolemur garnettii 75.72 6.00e-176 610.00
IUUC-Oar-090255 Ovis aries 74.67 5.00e-142 497.00
IUUC-Ptr-091029 Pan troglodytes 73.20 1.00e-154 539.00
IUUC-Pan-092241 Papio anubis 72.90 5.00e-168 583.00
IUUC-Psi-093506 Pelodiscus sinensis 59.31 3.00e-114 405.00
IUUC-Pma-094579 Petromyzon marinus 51.96 2.00e-26 114.00
IUUC-Pfo-097014 Poecilia formosa 42.46 4.00e-67 249.00
IUUC-Pab-098530 Pongo abelii 72.35 7.00e-155 540.00
IUUC-Pca-100939 Procavia capensis 55.76 1.00e-121 430.00
IUUC-Pva-103148 Pteropus vampyrus 70.58 2.00e-159 555.00
IUUC-Sce-106282 Saccharomyces cerevisiae 35.56 5.00e-07 48.90
IUUC-Sha-107187 Sarcophilus harrisii 62.72 1.00e-87 317.00
IUUC-Sar-113356 Sorex araneus 62.72 2.00e-113 402.00
IUUC-Ssc-116290 Sus scrofa 74.53 0.00e+00 629.00
IUUC-Tru-117910 Takifugu rubripes 39.92 4.00e-58 218.00
IUUC-Tsy-119329 Tarsius syrichta 69.49 2.00e-141 495.00
IUUC-Tni-120521 Tetraodon nigroviridis 38.22 2.00e-56 213.00
IUUC-Ttr-128997 Tursiops truncatus 68.82 1.00e-151 529.00
IUUC-Vpa-130154 Vicugna pacos 72.63 3.00e-171 594.00
IUUC-Vvi-131562 Vitis vinifera 30.61 2.00e-07 49.70
IUUC-Xtr-132805 Xenopus tropicalis 49.26 2.00e-93 336.00
Created Date 25-Jun-2017

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