iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028802

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitin-specific peptidase 54b

Genbank Nucleotide ID

BX005017

Gene Name

usp54b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000077749.4	ENSDART00000152941.1	ENSDARP00000127217.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.50e-25	91.1	34	351

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNl..gNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavspre.....llkalkkeaee 83
           Gl+N   +N+C++NS+LQ+L+++  +r+ + + +++k+ e+       ++ ++l+++f++++ s++k v p++     l k++++e+ +
   Q: 34   GLSNEpgQNSCFLNSALQVLWHLDIFRRSFRQLNTHKCMED------SCIFCALKSIFAQFQFSSEK-VLPSDalrsaLAKTFQDEQ-R 114
           88887668************************999999865......69************644444.4444333332555555444.5 PP
   S: 84   fsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldl 172
           f+     Da E+++ ll +++ ++                   sde++e+  + ++++ ++ F ++l +q++c++c+ +s    pf+++
   Q: 115  FQLGIMDDAAECFENLLMRIHFHI-------------------SDESKEDICTAKHCIPHQKFAMTLFEQCVCNNCGATSDPL-PFIQM 183
           99**********************...................566778899**************************99766.9**** PP
   S: 173  slpvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkk 252
              ++  + +++             d++ +  ++ +  g+ +   ++c +  +  +++ l ++Pe++++ L +   s + +  e +  +
   Q: 184  VHYISTTSLCNQAvrmleckekPTPDMFGELLRNASTMGDLRNCPSNCGEMLR-IRRV-LMNCPEIISIGLVWD--SDHSDLAEDVIHS 268
           *****999888879999999998889999999999999988777788877765.5554.5678**********9..4444555555555 PP
   S: 253  vefpleLdlsp..fctspeekqkekkkYeLiavvvHsGslssGHYvayvknekgk.WllfdDskVtev..keeevleetg...staYvl 333
           + + l+  l    + +++e++ k+++ Y L+++v+++G     HY ++  ++k + W++fdD +V+e+  k+++v++ +     ++ +l
   Q: 269  LGTCLR--LGDlfYRVTDERA-KQSELY-LVGMVCYYG----KHYSTFFFQTKIRkWMYFDDAHVKEIgpKWKDVVSRCIkghYQPLLL 349
           555544..4442133333333.335555.*********....9*****99987767************766889988554555555555 PP
   S: 334  fY 335
           +Y
   Q: 350  LY 351
           55 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MSWKRNYFAS GSGGGSLQGM FTPRNMTSIA PSKGLSNEPG QNSCFLNSAL QVLWHLDIFR 60
RSFRQLNTHK CMEDSCIFCA LKSIFAQFQF SSEKVLPSDA LRSALAKTFQ DEQRFQLGIM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGCTGGATG GCGCTGGTGG AAATTTGGGA ATGTGTGGTC AAGATTTGTG TCGGGTTGAG 60
CTGAGCTCGG ACAGGACGCG AGACTGACTG CATCTGAGTG CGAGCATTGA GGTGAGTAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR028889--USP_dom

PROSITE

PS50235--USP_3

Pfam

PF00443--UCH

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cin-025752	Ciona intestinalis	67.77	4.00e-48	182.00
IUUC-Csv-026063	Ciona savignyi	56.75	3.00e-114	404.00
IUUC-Gmo-038653	Gadus morhua	83.16	0.00e+00	657.00
IUUC-Gac-042157	Gasterosteus aculeatus	62.30	0.00e+00	816.00
IUUC-Itr-048187	Ictidomys tridecemlineatus	63.68	0.00e+00	845.00
IUUC-Laf-054578	Loxodonta africana	64.06	0.00e+00	790.00
IUUC-Mga-059393	Meleagris gallopavo	84.39	3.00e-157	547.00
IUUC-Mmu-063480	Mus musculus	64.03	0.00e+00	805.00
IUUC-Mlu-067841	Myotis lucifugus	64.84	0.00e+00	808.00
IUUC-Pma-094745	Petromyzon marinus	59.89	4.00e-135	474.00
IUUC-Pfo-096072	Poecilia formosa	73.66	0.00e+00	900.00
IUUC-Tgu-116521	Taeniopygia guttata	64.76	0.00e+00	903.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence