iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cme-027258

Ensembl Protein ID

CML100CT

UniProt Accession

M1VD99; M1VD99_CYAM1

Genbank Protein ID

BAM80712.1

Protein Name

Nuclear receptor co-repressor/HDAC3 complex subunit

Genbank Nucleotide ID

AP006494

Gene Name

CYME_CML100C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CML100C	CML100CT	CML100CT

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.80e-54	175.2	377	407
UBD/Beta-Prp	1.10e-70	236.2	347	560

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+d+v+++++ ++ tll+s+sdD+t+k+W+
   Q: 377  GHQDEVNSIKWdPTgTLLASASDDCTVKIWR 407
           8***********888***************9 PP

UBD/Beta-Prp

   S: 20   pdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls......................tgkcvhtlkghedsvl 98
           ++++ la+++ d++i vw+v ++k lr + gh++ev+++k++p+g +l+++s+D t+k+w +                       +   v+ ++ h+++v+
   Q: 347  QSEDTLASSGSDKMIYVWRVGEPKPLRVFCGHQDEVNSIKWDPTGTLLASASDDCTVKIWRPIrqsgtsvslasrtsngqnvsssSDYLVQDYTDHTKEVY 447
           678899******************************************************5555777777899999999999887777889999******* PP
   S: 99   slsfsp.sgdklvsGshdrtirvwdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.ktgkllrtltgghtdsvyslsfdsngkelv 196
           ++++sp ++++l+s+s d+t+r+w+  +g    + tl+ h g v +++++p g++l+sGs Dr + +W+l + gkl+r l+   ++ +  ++++ +g  ++
   Q: 448  TVRWSPgTNHYLASASFDSTVRIWEPAHGAAKATlTLARHFGPVFSIAFSPCGQYLASGSSDRNMLIWSLrEGGKLIRVLRC--QGGIFEVAWNATGSKVA 546
           ******888*********************99999****************99*****************666899999975..99*************** PP
   S: 197  sgsldgtvklwdlq 210
           ++  +gtv + dl+
   Q: 547  AALSNGTVAITDLR 560
           ********998875 PP

Organism

Cyanidioschyzon merolae

Protein Sequence
(Fasta)

MSNTITSEEV NYLVFRYLLE SGYTHSAFTF GHEALVLEND FDATGVPPGA LLGFLQRGVS 60
YAEIEAHVAR LHAERVKRST SCEENGALAP ETVSSADKKD ARTPVVVNLA DVHRALVNRP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGAACA CTATCACGTC CGAGGAGGTC AACTACCTAG TCTTTCGCTA CCTATTGGAG 60
AGTGGTTACA CCCACTCGGC CTTTACTTTT GGTCACGAGG CGCTTGTGCT GGAAAACGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0675--Receptor
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0016575--P:histone deacetylation
GO:0009409--P:response to cold

KEGG

cme:CYME_CML100C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	51.06	8.00e-36	140.00
IUUC-Aml-001717	Ailuropoda melanoleuca	39.83	2.00e-103	367.00
IUUC-Atr-002514	Amborella trichopoda	43.94	5.00e-96	342.00
IUUC-Apl-003232	Anas platyrhynchos	39.38	1.00e-104	371.00
IUUC-Aca-004611	Anolis carolinensis	40.00	9.00e-104	368.00
IUUC-Aly-005622	Arabidopsis lyrata	40.60	5.00e-83	299.00
IUUC-Ath-007137	Arabidopsis thaliana	42.32	4.00e-82	296.00
IUUC-Ago-007869	Ashbya gossypii	25.65	2.00e-33	134.00
IUUC-Ame-011601	Astyanax mexicanus	39.25	1.00e-104	371.00
IUUC-Bta-012418	Bos taurus	40.17	2.00e-104	370.00
IUUC-Bdi-014315	Brachypodium distachyon	42.96	2.00e-95	340.00
IUUC-Bol-016277	Brassica oleracea	41.40	6.00e-90	322.00
IUUC-Bra-016944	Brassica rapa	41.29	2.00e-90	324.00
IUUC-Cja-018832	Callithrix jacchus	40.00	2.00e-103	367.00
IUUC-Cfa-020029	Canis familiaris	39.83	2.00e-103	367.00
IUUC-Cpo-022080	Cavia porcellus	36.97	6.00e-93	332.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	40.38	6.00e-78	282.00
IUUC-Csa-024075	Chlorocebus sabaeus	40.00	2.00e-103	367.00
IUUC-Cho-024872	Choloepus hoffmanni	35.84	4.00e-24	103.00
IUUC-Cin-025704	Ciona intestinalis	38.93	8.00e-105	371.00
IUUC-Csv-026257	Ciona savignyi	38.22	4.00e-105	372.00
IUUC-Cne-026946	Cryptococcus neoformans	29.28	2.00e-24	105.00
IUUC-Dre-027906	Danio rerio	39.30	3.00e-104	369.00
IUUC-Dno-029196	Dasypus novemcinctus	40.00	2.00e-104	370.00
IUUC-Dor-030732	Dipodomys ordii	43.52	3.00e-86	309.00
IUUC-Dme-031939	Drosophila melanogaster	41.73	8.00e-84	302.00
IUUC-Ete-032822	Echinops telfairi	35.47	5.00e-85	305.00
IUUC-Eca-033897	Equus caballus	39.08	2.00e-105	374.00
IUUC-Eeu-034952	Erinaceus europaeus	33.62	4.00e-72	263.00
IUUC-Fca-035734	Felis catus	40.00	3.00e-104	369.00
IUUC-Fal-037185	Ficedula albicollis	40.00	6.00e-105	372.00
IUUC-Gmo-038870	Gadus morhua	39.75	2.00e-104	370.00
IUUC-Gga-041161	Gallus gallus	39.83	3.00e-104	369.00
IUUC-Gac-041851	Gasterosteus aculeatus	39.93	2.00e-106	377.00
IUUC-Gma-042796	Glycine max	39.91	4.00e-90	322.00
IUUC-Ggo-044882	Gorilla gorilla	40.00	2.00e-103	367.00
IUUC-Hsa-046488	Homo sapiens	40.00	2.00e-103	367.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	43.72	3.00e-88	316.00
IUUC-Kpa-049338	Komagataella pastoris	26.09	1.00e-24	105.00
IUUC-Lch-050535	Latimeria chalumnae	40.53	3.00e-107	379.00
IUUC-Lpe-051084	Leersia perrieri	42.46	2.00e-95	340.00
IUUC-Loc-052030	Lepisosteus oculatus	39.06	2.00e-103	367.00
IUUC-Laf-054280	Loxodonta africana	40.35	3.00e-105	373.00
IUUC-Mcc-055203	Macaca mulatta	40.00	2.00e-103	367.00
IUUC-Meu-056563	Macropus eugenii	44.66	1.00e-60	224.00
IUUC-Mtr-058624	Medicago truncatula	41.87	3.00e-89	320.00
IUUC-Mga-059660	Meleagris gallopavo	39.83	3.00e-104	369.00
IUUC-Mvi-060557	Microbotryum violaceum	33.55	4.00e-61	227.00
IUUC-Mmr-060925	Microcebus murinus	38.64	1.00e-95	341.00
IUUC-Mdo-062078	Monodelphis domestica	39.30	4.00e-103	365.00
IUUC-Mmu-063603	Mus musculus	40.00	8.00e-104	368.00
IUUC-Mac-065508	Musa acuminata	43.04	1.00e-61	228.00
IUUC-Mpu-066741	Mustela putorius furo	39.83	2.00e-103	367.00
IUUC-Mlu-068152	Myotis lucifugus	39.56	2.00e-104	370.00
IUUC-Nle-069229	Nomascus leucogenys	40.00	2.00e-103	367.00
IUUC-Opr-070277	Ochotona princeps	35.61	3.00e-80	290.00
IUUC-Ont-072252	Oreochromis niloticus	40.14	3.00e-108	383.00
IUUC-Oan-073562	Ornithorhynchus anatinus	39.36	2.00e-106	377.00
IUUC-Ocu-074280	Oryctolagus cuniculus	38.94	7.00e-103	365.00
IUUC-Oba-075618	Oryza barthii	38.86	3.00e-88	316.00
IUUC-Obr-076718	Oryza brachyantha	43.09	8.00e-95	338.00
IUUC-Ogl-077302	Oryza glaberrima	40.83	2.00e-96	343.00
IUUC-Ogu-078718	Oryza glumaepatula	42.46	3.00e-96	343.00
IUUC-Oin-079515	Oryza indica	39.04	1.00e-55	209.00
IUUC-Olo-080427	Oryza longistaminata	42.82	5.00e-90	322.00
IUUC-Ome-081696	Oryza meridionalis	41.30	3.00e-91	326.00
IUUC-Oni-082137	Oryza nivara	42.46	3.00e-96	343.00
IUUC-Opu-083505	Oryza punctata	39.39	9.00e-89	318.00
IUUC-Oru-085276	Oryza rufipogon	42.46	5.00e-96	342.00
IUUC-Osa-085791	Oryza sativa	42.46	3.00e-96	343.00
IUUC-Ola-087365	Oryzias latipes	39.65	4.00e-104	369.00
IUUC-Olu-087589	Ostreococcus lucimarinus	41.61	2.00e-116	410.00
IUUC-Oga-088357	Otolemur garnettii	38.46	7.00e-96	342.00
IUUC-Oar-089506	Ovis aries	40.14	6.00e-108	382.00
IUUC-Ptr-091532	Pan troglodytes	40.00	2.00e-103	367.00
IUUC-Pan-091927	Papio anubis	40.00	2.00e-103	367.00
IUUC-Psi-093941	Pelodiscus sinensis	39.02	4.00e-103	365.00
IUUC-Pma-094105	Petromyzon marinus	33.92	8.00e-40	154.00
IUUC-Ppa-095868	Physcomitrella patens	41.61	6.00e-93	332.00
IUUC-Pfo-097214	Poecilia formosa	39.97	3.00e-105	373.00
IUUC-Pab-098705	Pongo abelii	40.00	2.00e-103	367.00
IUUC-Pop-098989	Populus trichocarpa	42.23	2.00e-90	323.00
IUUC-Pca-100256	Procavia capensis	39.18	2.00e-101	360.00
IUUC-Ppe-101572	Prunus persica	42.75	6.00e-83	299.00
IUUC-Pva-102616	Pteropus vampyrus	39.51	2.00e-102	363.00
IUUC-Rno-105411	Rattus norvegicus	40.00	7.00e-104	368.00
IUUC-Sce-106132	Saccharomyces cerevisiae	23.83	3.00e-35	140.00
IUUC-Sha-107326	Sarcophilus harrisii	40.38	4.00e-108	382.00
IUUC-Sja-107844	Schizosaccharomyces japonicus	21.74	1.00e-19	88.60
IUUC-Smo-109205	Selaginella moellendorffii	41.70	1.00e-90	324.00
IUUC-Sit-110710	Setaria italica	43.62	7.00e-99	352.00
IUUC-Sly-111042	Solanum lycopersicum	39.12	1.00e-107	380.00
IUUC-Stu-112744	Solanum tuberosum	38.38	8.00e-105	371.00
IUUC-Sar-112971	Sorex araneus	36.95	3.00e-88	316.00
IUUC-Sbi-114420	Sorghum bicolor	44.08	3.00e-100	357.00
IUUC-Sre-115175	Sporisorium reilianum	35.50	2.00e-47	182.00
IUUC-Ssc-115695	Sus scrofa	39.37	5.00e-100	355.00
IUUC-Tgu-116898	Taeniopygia guttata	39.55	2.00e-105	373.00
IUUC-Tru-117862	Takifugu rubripes	39.62	7.00e-107	378.00
IUUC-Tsy-119424	Tarsius syrichta	42.14	2.00e-57	214.00
IUUC-Tni-119656	Tetraodon nigroviridis	39.79	3.00e-106	376.00
IUUC-Tca-121739	Theobroma cacao	39.44	1.00e-83	301.00
IUUC-Tae-125368	Triticum aestivum	42.47	4.00e-95	339.00
IUUC-Tur-126856	Triticum urartu	31.25	3.00e-53	200.00
IUUC-Tme-127126	Tuber melanosporum	28.50	4.00e-39	153.00
IUUC-Tbe-127665	Tupaia belangeri	36.32	2.00e-76	277.00
IUUC-Ttr-128826	Tursiops truncatus	38.08	4.00e-93	333.00
IUUC-Uma-129469	Ustilago maydis	35.97	1.00e-47	182.00
IUUC-Vpa-130768	Vicugna pacos	39.93	6.00e-102	362.00
IUUC-Vvi-131193	Vitis vinifera	42.34	2.00e-88	317.00
IUUC-Xtr-132842	Xenopus tropicalis	41.40	2.00e-80	290.00
IUUC-Xma-133591	Xiphophorus maculatus	39.38	8.00e-106	375.00
IUUC-Yli-134648	Yarrowia lipolytica	26.84	7.00e-37	146.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence