iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007315

UUCD1 version

UUC-ArT-01335

Ensembl Protein ID

AT1G72310.1

UniProt Accession

Q9XF63; ATL3_ARATH

Genbank Protein ID

AAD33581.1; AAG52584.1; AAG51805.1; AEE35301.1; AAQ22609.1

Protein Name

RING-H2 finger protein ATL3; RING-type E3 ubiquitin transferase ATL3

Genbank Nucleotide ID

AF132013; AC016529; AC067754; CP002684; BT010140

Gene Name

ATL3; At1g72310; T10D10.22; T9N14.21

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G72310	AT1G72310.1	AT1G72310.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.50e-07	32.7	127	169

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl+++   ++  ++lp C+H fh +C+ +w       + + +CP+Cr
   Q: 127  CSICLSELvkgDK-ARLLPkCNHSFHVECIDMW------FQSHSTCPICR 169
           ********88544.999999*************......9999******8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDDNRSTHSS MFGDLSTEEV TSKIILTAII VLFMAVLFVL ILHLYAKLYW WRIDQLQQQQ 60
QQQQQEQEQE EDQSSIAPPV VTRRQRRRFI FVPGQDALSN TGLTSFELSS LPIVFFRQDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTATTATTGT GAAACACCTA AACCTATAGT AATTAGTCAT ACAAAACAAA AAAAAAGAAC 60
AAAATGTAGT TAGTATTTTT GTAATGGAGA GGAGGAAGCA TTACCAGAAA AACTGAGTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G72310

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005451	Arabidopsis lyrata	92.13	6.00e-142	496.00
IUUC-Bta-012758	Bos taurus	37.36	2.00e-16	80.10
IUUC-Bdi-014880	Brachypodium distachyon	43.54	4.00e-27	114.00
IUUC-Bol-016205	Brassica oleracea	71.57	6.00e-79	286.00
IUUC-Bra-016746	Brassica rapa	68.42	1.00e-89	322.00
IUUC-Cja-018980	Callithrix jacchus	40.43	3.00e-15	76.60
IUUC-Eca-033892	Equus caballus	39.36	4.00e-15	76.30
IUUC-Hvu-047652	Hordeum vulgare	41.77	8.00e-29	120.00
IUUC-Mor-057098	Magnaporthe oryzae	47.69	2.00e-13	70.50
IUUC-Mmr-060699	Microcebus murinus	40.91	2.00e-15	77.00
IUUC-Mpu-065891	Mustela putorius furo	40.91	8.00e-15	75.10
IUUC-Opu-083253	Oryza punctata	39.37	6.00e-16	77.40
IUUC-Olu-087845	Ostreococcus lucimarinus	53.06	4.00e-13	64.70
IUUC-Oga-088110	Otolemur garnettii	43.02	1.00e-16	80.90
IUUC-Oar-090427	Ovis aries	36.26	9.00e-16	78.20
IUUC-Pca-100143	Procavia capensis	41.49	1.00e-15	77.40
IUUC-Ppe-101738	Prunus persica	52.05	2.00e-34	138.00
IUUC-Pva-103151	Pteropus vampyrus	39.77	4.00e-15	75.90
IUUC-Sit-110093	Setaria italica	39.81	8.00e-18	82.80
IUUC-Sar-113229	Sorex araneus	40.43	4.00e-15	75.90
IUUC-Vpa-130480	Vicugna pacos	40.91	9.00e-15	74.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence