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Tag Content
UUCD2 ID IUUC-Sha-106809
UUCD1 version UUC-SaH-00437
Ensembl Protein ID ENSSHAP00000011061.1
UniProt Accession G3W6K6; G3W6K6_SARHA
Genbank Protein ID ENSSHAP00000011061
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AEFK01108011
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSHAG00000009527.1 ENSSHAT00000011154.1 ENSSHAP00000011060.1
ENSSHAG00000009527.1 ENSSHAT00000011155.1 ENSSHAP00000011061.1
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/MIU 53.38 4.00e-128 456.00 IUUC-Hsa-046424
UBD/Alpha-Helix/UMI 53.38 4.00e-128 456.00 IUUC-Hsa-046424
E3 activity/RING/RING 53.38 4.00e-128 456.00 IUUC-Hsa-046424
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Sarcophilus harrisii
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MASPPDVELS LSDCLCQICT DILIEPVTLP CGHTLCNSCF QLTVEKANLC CPFCRRRVSS 60
WARQHARENT LINMELWNKI QKNYPEKCKH RTTGQSSTET VDVYKPLHLL SQPGELRREY 120
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Protein Fasta Sequence



>IUUC-Sha-106809|UBD,MIU;UBD,UMI;E3,RING|Sarcophilus harrisii
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Nucleotide Sequence
(Fasta)
GTGTTGGTGC TGAATTAACG GCACTCATTG ATTAAAATGG CTTCCCCTCC TGATGTCGAG 60
CTTTCTTTAT CCGATTGCTT GTGCCAAATA TGCACGGATA TTCTAATAGA ACCGGTAACC 120
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Nucleotide Fasta Sequence



>IUUC-Sha-106809|UBD,MIU;UBD,UMI;E3,RING|Sarcophilus harrisii
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000755 Aegilops tauschii 39.47 7.00e-11 61.60
IUUC-Aml-001573 Ailuropoda melanoleuca 55.81 5.00e-134 471.00
IUUC-Atr-002992 Amborella trichopoda 39.13 5.00e-11 61.60
IUUC-Apl-003963 Anas platyrhynchos 44.38 8.00e-67 247.00
IUUC-Aca-004420 Anolis carolinensis 68.70 1.00e-45 177.00
IUUC-Ame-011521 Astyanax mexicanus 52.50 4.00e-37 148.00
IUUC-Bta-013002 Bos taurus 55.71 1.00e-138 486.00
IUUC-Cja-019945 Callithrix jacchus 53.46 1.00e-123 436.00
IUUC-Cfa-020533 Canis familiaris 55.46 4.00e-135 474.00
IUUC-Cpo-021643 Cavia porcellus 47.77 1.00e-95 343.00
IUUC-Csa-023638 Chlorocebus sabaeus 52.42 2.00e-129 455.00
IUUC-Cho-024319 Choloepus hoffmanni 53.98 4.00e-125 441.00
IUUC-Cin-025679 Ciona intestinalis 38.26 3.00e-22 98.60
IUUC-Csv-026052 Ciona savignyi 38.74 3.00e-20 91.70
IUUC-Cne-026875 Cryptococcus neoformans 29.87 7.00e-07 48.90
IUUC-Dre-028519 Danio rerio 45.25 2.00e-36 146.00
IUUC-Dno-029294 Dasypus novemcinctus 56.75 7.00e-140 490.00
IUUC-Ete-032714 Echinops telfairi 40.92 7.00e-53 201.00
IUUC-Eca-033343 Equus caballus 57.42 4.00e-143 501.00
IUUC-Eeu-034633 Erinaceus europaeus 36.80 3.00e-13 69.30
IUUC-Fca-036251 Felis catus 55.07 4.00e-139 488.00
IUUC-Fal-037048 Ficedula albicollis 45.98 5.00e-80 291.00
IUUC-Gmo-039400 Gadus morhua 46.96 7.00e-32 128.00
IUUC-Gga-040444 Gallus gallus 42.79 3.00e-73 269.00
IUUC-Gac-041735 Gasterosteus aculeatus 50.42 5.00e-35 140.00
IUUC-Gma-044332 Glycine max 35.53 3.00e-11 62.80
IUUC-Ggo-044940 Gorilla gorilla 47.29 4.00e-72 265.00
IUUC-Hsa-046424 Homo sapiens 53.38 1.00e-119 422.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 56.99 2.00e-131 462.00
IUUC-Lch-050649 Latimeria chalumnae 40.24 4.00e-62 231.00
IUUC-Loc-051847 Lepisosteus oculatus 36.34 3.00e-52 199.00
IUUC-Laf-053938 Loxodonta africana 54.48 3.00e-146 511.00
IUUC-Mcc-055360 Macaca mulatta 52.08 5.00e-120 424.00
IUUC-Meu-056684 Macropus eugenii 70.93 0.00e+00 695.00
IUUC-Mtr-058007 Medicago truncatula 34.15 2.00e-11 63.20
IUUC-Mga-059699 Meleagris gallopavo 43.03 2.00e-72 266.00
IUUC-Mmr-060779 Microcebus murinus 58.23 1.00e-153 536.00
IUUC-Mdo-062225 Monodelphis domestica 77.70 0.00e+00 734.00
IUUC-Mmu-064239 Mus musculus 47.03 2.00e-98 352.00
IUUC-Mpu-066141 Mustela putorius furo 56.06 4.00e-144 504.00
IUUC-Mlu-067945 Myotis lucifugus 56.77 2.00e-138 485.00
IUUC-Nle-069769 Nomascus leucogenys 54.07 3.00e-124 438.00
IUUC-Opr-070905 Ochotona princeps 48.70 4.00e-112 398.00
IUUC-Ont-071477 Oreochromis niloticus 52.94 7.00e-36 144.00
IUUC-Oan-073531 Ornithorhynchus anatinus 43.96 8.00e-67 247.00
IUUC-Ocu-073832 Oryctolagus cuniculus 52.95 6.00e-123 434.00
IUUC-Ogl-077658 Oryza glaberrima 40.91 3.00e-11 62.80
IUUC-Ogu-078203 Oryza glumaepatula 41.43 2.00e-10 59.70
IUUC-Oin-079383 Oryza indica 40.91 3.00e-11 62.80
IUUC-Ome-081482 Oryza meridionalis 38.64 1.00e-10 60.80
IUUC-Oni-083025 Oryza nivara 40.91 3.00e-11 62.80
IUUC-Osa-085978 Oryza sativa 40.91 3.00e-11 62.80
IUUC-Ola-086478 Oryzias latipes 47.66 2.00e-33 134.00
IUUC-Oga-088318 Otolemur garnettii 51.11 2.00e-92 332.00
IUUC-Oar-089647 Ovis aries 54.67 5.00e-135 474.00
IUUC-Ptr-090516 Pan troglodytes 53.55 1.00e-124 439.00
IUUC-Pan-092302 Papio anubis 51.81 1.00e-120 426.00
IUUC-Psi-093604 Pelodiscus sinensis 46.02 2.00e-91 329.00
IUUC-Pfo-096441 Poecilia formosa 49.59 1.00e-36 147.00
IUUC-Pab-097729 Pongo abelii 53.21 6.00e-121 427.00
IUUC-Pca-100552 Procavia capensis 47.18 2.00e-76 280.00
IUUC-Pva-102780 Pteropus vampyrus 55.88 2.00e-138 485.00
IUUC-Rno-105461 Rattus norvegicus 49.83 1.00e-110 393.00
IUUC-Sly-111317 Solanum lycopersicum 32.99 2.00e-12 66.60
IUUC-Stu-112783 Solanum tuberosum 36.84 9.00e-12 64.30
IUUC-Sar-113579 Sorex araneus 48.78 5.00e-110 391.00
IUUC-Sbi-113834 Sorghum bicolor 39.02 3.00e-11 62.80
IUUC-Tgu-117187 Taeniopygia guttata 67.33 2.00e-53 201.00
IUUC-Tru-118182 Takifugu rubripes 52.99 4.00e-35 142.00
IUUC-Tsy-119217 Tarsius syrichta 43.11 3.00e-33 135.00
IUUC-Tni-120205 Tetraodon nigroviridis 52.50 2.00e-35 142.00
IUUC-Tca-121416 Theobroma cacao 38.16 4.00e-11 62.00
IUUC-Tvi-122557 Trichoderma virens 31.91 2.00e-05 43.90
IUUC-Tur-126688 Triticum urartu 38.16 9.00e-11 60.80
IUUC-Tbe-127622 Tupaia belangeri 54.59 2.00e-137 482.00
IUUC-Ttr-128988 Tursiops truncatus 57.71 4.00e-144 504.00
IUUC-Vpa-130302 Vicugna pacos 51.14 2.00e-80 293.00
IUUC-Vvi-131424 Vitis vinifera 36.84 2.00e-09 56.60
IUUC-Xtr-132196 Xenopus tropicalis 38.06 2.00e-66 246.00
Created Date 25-Jun-2017

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