iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115760

Ensembl Protein ID

ENSSSCP00000004751.2

UniProt Accession

F1RSY9; F1RSY9_PIG

Genbank Protein ID

ENSSSCP00000004751

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU915312

Gene Name

CDC40

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000004403.2	ENSSSCT00000004866.2	ENSSSCP00000004751.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-30	104.6	330	367
UBD/Beta-Prp	4.40e-46	157.7	279	448

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd..tllvsGsdDgtikvWDlrtgvll 36
           gH+  v++++f++  t ++s+++D  +k+WD+ tg ++
   Q: 330  GHSKAVRDICFNTagTQFLSAAYDRYLKLWDTETGQCI 367
           8**********444699******************996 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdlet.gqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkl 171
           k++h+++gh++ v +++++p sg+ l+s s d  i++w++   + cl+ t+ gh+++v+ ++++  g  + s+++Dr ++lWd +tg++
   Q: 279  KQIHVWSGHTKGVSAVRLFPlSGHLLLSCSMDCKIKLWEVYGdRRCLR-TFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQC 366
           899*****************999****************975156776.**************************************** PP
   S: 172  lrtltgghtdsvyslsfdsng...kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..d 250
           + ++t  + +  y+++f+++    + +v+g  d+++  wd+++ge+v+++  h   v+ + f +++ r+vs+s+D+s+r+W  d
   Q: 367  ISRFT--NRKVPYCVKFNPDEdkqNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWewD 448
           ****8..588889***999988889*******************************************************9444 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MSAAIAALAA SYGSGSGSES DSDSEGGRCS LPAADSLMHL TKSPSAKPSL AVAVDSAPEV 60
AVKEDLETGV HLDPAVKEVQ YNPTYETMFA PEFGPENPFR TQQMAAPRNM LSGYAEPAHI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATCATAAAG GATTTTTTAG GAAAGGAAAT AAATAATGTG TGTCGTGGCA ATCAGGACCT 60
GAAGCTGCTC CTTCTTCCGT CAGGGCCTGG ACTCCACCGA GTATCTGTTG CCGTCATGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0003723--F:RNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

ssc:100511111

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000473	Aegilops tauschii	49.81	1.00e-143	503.00
IUUC-Aml-002243	Ailuropoda melanoleuca	99.52	0.00e+00	817.00
IUUC-Atr-002502	Amborella trichopoda	51.13	7.00e-154	536.00
IUUC-Apl-003885	Anas platyrhynchos	94.84	0.00e+00	1024.00
IUUC-Aca-004854	Anolis carolinensis	69.84	0.00e+00	750.00
IUUC-Aly-006158	Arabidopsis lyrata	49.21	2.00e-155	542.00
IUUC-Ath-007474	Arabidopsis thaliana	52.25	2.00e-155	542.00
IUUC-Ago-007726	Ashbya gossypii	37.08	2.00e-70	259.00
IUUC-Acl-008220	Aspergillus clavatus	43.57	1.00e-132	466.00
IUUC-Afl-008473	Aspergillus flavus	43.06	1.00e-129	456.00
IUUC-Afu-008773	Aspergillus fumigatus	43.50	3.00e-131	462.00
IUUC-Ani-009323	Aspergillus nidulans	43.42	6.00e-118	417.00
IUUC-Ang-009851	Aspergillus niger	43.08	4.00e-131	461.00
IUUC-Aor-009950	Aspergillus oryzae	43.06	1.00e-129	456.00
IUUC-Ate-010372	Aspergillus terreus	44.80	6.00e-133	467.00
IUUC-Ame-011660	Astyanax mexicanus	85.74	0.00e+00	982.00
IUUC-Bgr-012230	Blumeria graminis	44.44	1.00e-125	443.00
IUUC-Bta-012568	Bos taurus	99.64	0.00e+00	1098.00
IUUC-Bci-013646	Botrytis cinerea	44.94	1.00e-122	432.00
IUUC-Bdi-014199	Brachypodium distachyon	50.29	6.00e-145	507.00
IUUC-Bol-015695	Brassica oleracea	51.98	5.00e-162	563.00
IUUC-Bra-017923	Brassica rapa	50.71	2.00e-162	565.00
IUUC-Cel-018535	Caenorhabditis elegans	51.45	2.00e-178	618.00
IUUC-Cja-019071	Callithrix jacchus	98.91	0.00e+00	1093.00
IUUC-Cfa-020559	Canis familiaris	99.46	0.00e+00	1095.00
IUUC-Cpo-022356	Cavia porcellus	98.73	0.00e+00	1093.00
IUUC-Cre-022594	Chlamydomonas reinhardtii	44.02	2.00e-77	281.00
IUUC-Csa-023125	Chlorocebus sabaeus	99.28	0.00e+00	1098.00
IUUC-Cho-024676	Choloepus hoffmanni	90.50	0.00e+00	954.00
IUUC-Cin-025229	Ciona intestinalis	71.03	0.00e+00	769.00
IUUC-Csv-025868	Ciona savignyi	70.53	2.00e-40	155.00
IUUC-Cgl-026739	Colletotrichum gloeosporioides	41.07	1.00e-107	383.00
IUUC-Cne-026885	Cryptococcus neoformans	51.85	4.00e-153	534.00
IUUC-Dre-027631	Danio rerio	85.16	0.00e+00	986.00
IUUC-Dno-029815	Dasypus novemcinctus	88.51	0.00e+00	1007.00
IUUC-Dor-031143	Dipodomys ordii	83.70	0.00e+00	915.00
IUUC-Dse-031520	Dothistroma septosporum	46.09	2.00e-96	346.00
IUUC-Dme-032050	Drosophila melanogaster	62.36	0.00e+00	748.00
IUUC-Ete-032866	Echinops telfairi	96.38	0.00e+00	1064.00
IUUC-Eca-033384	Equus caballus	99.64	0.00e+00	1095.00
IUUC-Eeu-034471	Erinaceus europaeus	84.42	0.00e+00	852.00
IUUC-Fca-035727	Felis catus	99.64	0.00e+00	1100.00
IUUC-Fal-036774	Ficedula albicollis	95.40	0.00e+00	1035.00
IUUC-Fox-037951	Fusarium oxysporum	42.70	7.00e-127	447.00
IUUC-Fso-038287	Fusarium solani	43.69	1.00e-124	439.00
IUUC-Gmo-039670	Gadus morhua	82.08	0.00e+00	950.00
IUUC-Ggr-039764	Gaeumannomyces graminis	40.59	3.00e-116	411.00
IUUC-Gga-040293	Gallus gallus	95.74	0.00e+00	1036.00
IUUC-Gac-042159	Gasterosteus aculeatus	85.06	0.00e+00	986.00
IUUC-Gma-044299	Glycine max	50.38	1.00e-145	509.00
IUUC-Ggo-044864	Gorilla gorilla	98.91	0.00e+00	1095.00
IUUC-Hsa-046602	Homo sapiens	98.91	0.00e+00	1095.00
IUUC-Hvu-047431	Hordeum vulgare	28.52	1.00e-34	140.00
IUUC-Itr-047985	Ictidomys tridecemlineatus	99.52	0.00e+00	820.00
IUUC-Kpa-049318	Komagataella pastoris	45.85	2.00e-96	345.00
IUUC-Lch-049796	Latimeria chalumnae	76.01	0.00e+00	851.00
IUUC-Lpe-051153	Leersia perrieri	50.27	2.00e-147	515.00
IUUC-Loc-052467	Lepisosteus oculatus	87.18	0.00e+00	996.00
IUUC-Lma-053107	Leptosphaeria maculans	48.16	5.00e-113	400.00
IUUC-Laf-053787	Loxodonta africana	98.74	0.00e+00	1125.00
IUUC-Mcc-055706	Macaca mulatta	99.28	0.00e+00	1098.00
IUUC-Meu-056757	Macropus eugenii	80.92	0.00e+00	639.00
IUUC-Mor-057079	Magnaporthe oryzae	39.04	7.00e-112	397.00
IUUC-Mpo-057533	Magnaporthe poae	50.71	2.00e-112	399.00
IUUC-Mtr-057950	Medicago truncatula	62.39	1.00e-135	476.00
IUUC-Mla-058910	Melampsora laricipopulina	47.39	1.00e-148	520.00
IUUC-Mga-059366	Meleagris gallopavo	94.66	0.00e+00	1033.00
IUUC-Mvi-060349	Microbotryum violaceum	58.69	1.00e-136	480.00
IUUC-Mmr-061209	Microcebus murinus	99.46	0.00e+00	1132.00
IUUC-Mdo-062118	Monodelphis domestica	96.20	0.00e+00	1108.00
IUUC-Mmu-063173	Mus musculus	98.91	0.00e+00	1092.00
IUUC-Mac-065080	Musa acuminata	49.82	2.00e-153	535.00
IUUC-Mpu-066659	Mustela putorius furo	99.46	0.00e+00	1097.00
IUUC-Mlu-067029	Myotis lucifugus	98.91	0.00e+00	1066.00
IUUC-Nfi-068334	Neosartorya fischeri	45.05	2.00e-132	466.00
IUUC-Ncr-068675	Neurospora crassa	38.61	1.00e-103	369.00
IUUC-Nle-070113	Nomascus leucogenys	98.19	0.00e+00	1090.00
IUUC-Opr-070685	Ochotona princeps	90.58	0.00e+00	1038.00
IUUC-Ont-071680	Oreochromis niloticus	84.83	0.00e+00	981.00
IUUC-Oan-073573	Ornithorhynchus anatinus	96.88	0.00e+00	966.00
IUUC-Ocu-074074	Oryctolagus cuniculus	98.55	0.00e+00	1125.00
IUUC-Oba-075625	Oryza barthii	50.36	1.00e-147	516.00
IUUC-Obr-076510	Oryza brachyantha	49.73	2.00e-147	515.00
IUUC-Ogl-077275	Oryza glaberrima	50.36	1.00e-147	516.00
IUUC-Ogu-078563	Oryza glumaepatula	50.36	1.00e-147	516.00
IUUC-Oin-079898	Oryza indica	63.45	2.00e-134	472.00
IUUC-Olo-081080	Oryza longistaminata	52.02	1.00e-141	495.00
IUUC-Ome-081794	Oryza meridionalis	32.27	3.00e-29	122.00
IUUC-Oni-083121	Oryza nivara	50.36	1.00e-147	516.00
IUUC-Opu-083329	Oryza punctata	50.09	2.00e-146	512.00
IUUC-Oru-084807	Oryza rufipogon	49.80	3.00e-129	454.00
IUUC-Osa-086039	Oryza sativa	50.45	3.00e-148	518.00
IUUC-Ola-087149	Oryzias latipes	83.91	0.00e+00	972.00
IUUC-Olu-087627	Ostreococcus lucimarinus	43.74	6.00e-122	430.00
IUUC-Oga-088359	Otolemur garnettii	99.28	0.00e+00	1093.00
IUUC-Oar-089390	Ovis aries	99.64	0.00e+00	1094.00
IUUC-Ptr-090894	Pan troglodytes	98.91	0.00e+00	1095.00
IUUC-Pan-092476	Papio anubis	99.28	0.00e+00	1098.00
IUUC-Psi-093527	Pelodiscus sinensis	93.32	0.00e+00	988.00
IUUC-Pno-094771	Phaeosphaeria nodorum	48.88	1.00e-112	399.00
IUUC-Ppa-095386	Physcomitrella patens	50.47	1.00e-155	542.00
IUUC-Pfo-096139	Poecilia formosa	86.11	0.00e+00	990.00
IUUC-Pab-097838	Pongo abelii	99.19	0.00e+00	971.00
IUUC-Pop-098945	Populus trichocarpa	51.50	4.00e-153	534.00
IUUC-Pca-100876	Procavia capensis	83.70	0.00e+00	941.00
IUUC-Ppe-101777	Prunus persica	50.85	2.00e-151	528.00
IUUC-Pva-102418	Pteropus vampyrus	98.73	0.00e+00	1090.00
IUUC-Pgr-103456	Puccinia graminis	50.55	1.00e-159	556.00
IUUC-Ptt-103731	Puccinia triticina	46.57	9.00e-146	510.00
IUUC-Pte-104386	Pyrenophora teres	49.51	3.00e-114	405.00
IUUC-Pyt-104560	Pyrenophora triticirepentis	50.49	3.00e-114	405.00
IUUC-Rno-105694	Rattus norvegicus	94.38	0.00e+00	1023.00
IUUC-Sce-106339	Saccharomyces cerevisiae	37.89	1.00e-75	276.00
IUUC-Sha-106709	Sarcophilus harrisii	96.38	0.00e+00	1107.00
IUUC-Sja-107817	Schizosaccharomyces japonicus	40.69	2.00e-124	438.00
IUUC-Spo-108331	Schizosaccharomyces pombe	42.52	2.00e-123	436.00
IUUC-Ssl-108530	Sclerotinia sclerotiorum	46.10	1.00e-116	413.00
IUUC-Smo-108778	Selaginella moellendorffii	45.11	2.00e-126	446.00
IUUC-Sit-110446	Setaria italica	50.29	3.00e-145	508.00
IUUC-Sly-111330	Solanum lycopersicum	50.56	3.00e-151	528.00
IUUC-Stu-112610	Solanum tuberosum	50.18	2.00e-151	528.00
IUUC-Sar-113065	Sorex araneus	79.00	2.00e-127	448.00
IUUC-Sbi-114005	Sorghum bicolor	49.90	2.00e-143	502.00
IUUC-Sre-114988	Sporisorium reilianum	50.19	4.00e-158	551.00
IUUC-Tgu-116493	Taeniopygia guttata	95.94	0.00e+00	1042.00
IUUC-Tru-118489	Takifugu rubripes	81.68	0.00e+00	950.00
IUUC-Tsy-119332	Tarsius syrichta	98.55	0.00e+00	1127.00
IUUC-Tni-120202	Tetraodon nigroviridis	78.32	0.00e+00	882.00
IUUC-Tca-121429	Theobroma cacao	49.72	1.00e-150	526.00
IUUC-Tre-122162	Trichoderma reesei	43.22	5.00e-125	441.00
IUUC-Tvi-122500	Trichoderma virens	42.94	3.00e-122	432.00
IUUC-Tae-125557	Triticum aestivum	48.52	1.00e-143	503.00
IUUC-Tur-126554	Triticum urartu	48.42	9.00e-142	496.00
IUUC-Tme-126919	Tuber melanosporum	45.31	4.00e-139	488.00
IUUC-Tbe-127968	Tupaia belangeri	93.48	0.00e+00	1054.00
IUUC-Ttr-129215	Tursiops truncatus	99.09	0.00e+00	1087.00
IUUC-Uma-129622	Ustilago maydis	49.46	1.00e-160	559.00
IUUC-Vda-129750	Verticillium dahliae	44.23	3.00e-124	438.00
IUUC-Vpa-130617	Vicugna pacos	96.71	0.00e+00	981.00
IUUC-Vvi-131238	Vitis vinifera	61.81	2.00e-134	472.00
IUUC-Xtr-131865	Xenopus tropicalis	90.44	0.00e+00	1016.00
IUUC-Xma-133627	Xiphophorus maculatus	86.29	0.00e+00	993.00
IUUC-Yli-134390	Yarrowia lipolytica	45.76	4.00e-116	411.00
IUUC-Zma-135925	Zea mays	50.86	8.00e-141	493.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence