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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Spo-108362
UUCD1 version UUC-ScP-00130
Ensembl Protein ID SPBC215.15.1:pep
UniProt Accession O94319; SEC13_SCHPO
Genbank Protein ID CAA22129.1
Protein Name Protein transport protein sec13
Genbank Nucleotide ID CU329671
Gene Name sec13; SPBC215.15
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPBC215.15 SPBC215.15.1 SPBC215.15.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
HINTMentha
Post-translational Modifications (PTMs)
dbPAFdbPTMUniProt
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.20e-26 89.8 51 83
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWD 29
           gH+++v+ l +  +   t+l+s+s+Dg + vW+
   Q: 51   GHSGPVWQLGWahPKfgTILASASYDGHVIVWR 83
           8***********9555599*************9 PP
   
Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description


     Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity). Involved in septum formation.
 Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity). Involved in septum formation.
Protein Sequence
(Fasta)
MTTVDTQHDD MIHDAILDYY GKRLATCSSD QTIKVFSIEN NQQTLLETLR GHSGPVWQLG 60
WAHPKFGTIL ASASYDGHVI VWRETGGVWS ELMDHTAHQA SVNAVSWAPH EYGALLACAS 120
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Protein Fasta Sequence


>IUUC-Spo-108362|E3,WD_repeat|Schizosaccharomyces pombe
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Nucleotide Sequence
(Fasta)
CCTTGCACTA TATCTTTCAT TGTTATGGAT ATGCGTGAGC GAAGTTCACT ACTACACAAC 60
ACATAAGTGT AAGTTTATTC AAAATGACGA CCGTAGATAC ACAGCACGAT GATATGATTG 120
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Nucleotide Fasta Sequence


>IUUC-Spo-108362|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0472--Membrane
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0030127--C:COPII vesicle coat
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0005789--C:endoplasmic reticulum membrane
GO:0005643--C:nuclear pore
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0035859--C:Seh1-associated complex
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport
KEGG spo:SPBC215.15
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000606 Aegilops tauschii 47.52 3.00e-73 266.00
IUUC-Aml-001832 Ailuropoda melanoleuca 50.66 1.00e-86 311.00
IUUC-Atr-002914 Amborella trichopoda 51.33 7.00e-77 278.00
IUUC-Apl-003992 Anas platyrhynchos 52.71 5.00e-82 295.00
IUUC-Aca-005283 Anolis carolinensis 50.17 1.00e-85 308.00
IUUC-Aly-005654 Arabidopsis lyrata 49.13 2.00e-71 259.00
IUUC-Ath-006810 Arabidopsis thaliana 49.13 1.00e-71 261.00
IUUC-Ago-007827 Ashbya gossypii 55.89 2.00e-97 346.00
IUUC-Acl-008205 Aspergillus clavatus 54.39 8.00e-86 307.00
IUUC-Afl-008748 Aspergillus flavus 53.97 3.00e-87 312.00
IUUC-Afu-008791 Aspergillus fumigatus 54.05 3.00e-85 306.00
IUUC-Ani-009152 Aspergillus nidulans 54.30 5.00e-89 318.00
IUUC-Ang-009765 Aspergillus niger 54.64 1.00e-88 317.00
IUUC-Aor-009927 Aspergillus oryzae 53.56 8.00e-84 301.00
IUUC-Ate-010248 Aspergillus terreus 54.30 4.00e-88 315.00
IUUC-Ame-011478 Astyanax mexicanus 50.17 6.00e-86 308.00
IUUC-Bgr-012276 Blumeria graminis 52.35 2.00e-83 300.00
IUUC-Bta-012700 Bos taurus 52.25 1.00e-85 307.00
IUUC-Bci-013722 Botrytis cinerea 53.47 8.00e-88 314.00
IUUC-Bdi-014818 Brachypodium distachyon 47.19 7.00e-73 265.00
IUUC-Bol-015779 Brassica oleracea 49.13 2.00e-71 259.00
IUUC-Bra-017934 Brassica rapa 48.00 2.00e-71 259.00
IUUC-Cel-018479 Caenorhabditis elegans 41.41 6.00e-62 228.00
IUUC-Cja-019956 Callithrix jacchus 51.38 4.00e-84 302.00
IUUC-Cfa-020752 Canis familiaris 52.60 1.00e-86 310.00
IUUC-Cpo-021871 Cavia porcellus 52.94 1.00e-87 313.00
IUUC-Cre-022797 Chlamydomonas reinhardtii 51.16 1.00e-81 294.00
IUUC-Csa-023393 Chlorocebus sabaeus 52.25 8.00e-86 308.00
IUUC-Cho-024786 Choloepus hoffmanni 39.58 2.00e-54 204.00
IUUC-Cin-025332 Ciona intestinalis 50.66 2.00e-83 300.00
IUUC-Csv-025926 Ciona savignyi 49.34 2.00e-82 296.00
IUUC-Cgl-026413 Colletotrichum gloeosporioides 54.11 8.00e-82 294.00
IUUC-Cne-027054 Cryptococcus neoformans 49.38 1.00e-83 301.00
IUUC-Cme-027165 Cyanidioschyzon merolae 40.11 1.00e-54 206.00
IUUC-Dre-027782 Danio rerio 49.83 5.00e-84 302.00
IUUC-Dno-029628 Dasypus novemcinctus 52.25 2.00e-86 310.00
IUUC-Dor-030650 Dipodomys ordii 50.64 8.00e-68 248.00
IUUC-Dse-031206 Dothistroma septosporum 50.33 5.00e-81 291.00
IUUC-Dme-031854 Drosophila melanogaster 47.57 4.00e-74 269.00
IUUC-Ete-032618 Echinops telfairi 36.33 1.00e-45 174.00
IUUC-Eca-033268 Equus caballus 52.94 1.00e-86 310.00
IUUC-Fca-035918 Felis catus 52.60 1.00e-86 310.00
IUUC-Fal-037551 Ficedula albicollis 51.97 1.00e-77 280.00
IUUC-Fox-037763 Fusarium oxysporum 54.49 2.00e-88 316.00
IUUC-Fso-038341 Fusarium solani 54.61 6.00e-87 311.00
IUUC-Gmo-038638 Gadus morhua 51.32 8.00e-87 311.00
IUUC-Ggr-039865 Gaeumannomyces graminis 53.33 7.00e-87 311.00
IUUC-Gga-040193 Gallus gallus 53.29 2.00e-87 313.00
IUUC-Gma-044311 Glycine max 51.37 8.00e-76 275.00
IUUC-Ggo-045252 Gorilla gorilla 52.25 5.00e-86 308.00
IUUC-Hsa-046565 Homo sapiens 51.90 2.00e-85 306.00
IUUC-Hvu-047835 Hordeum vulgare 48.51 6.00e-75 271.00
IUUC-Itr-048587 Ictidomys tridecemlineatus 52.25 3.00e-86 309.00
IUUC-Kpa-049148 Komagataella pastoris 56.90 2.00e-101 359.00
IUUC-Lch-050421 Latimeria chalumnae 51.16 7.00e-86 308.00
IUUC-Lpe-051187 Leersia perrieri 48.49 1.00e-73 270.00
IUUC-Loc-052167 Lepisosteus oculatus 49.50 3.00e-85 306.00
IUUC-Lma-053250 Leptosphaeria maculans 56.38 1.00e-86 310.00
IUUC-Laf-054304 Loxodonta africana 52.60 3.00e-87 312.00
IUUC-Mcc-055519 Macaca mulatta 52.25 9.00e-86 308.00
IUUC-Meu-056439 Macropus eugenii 51.16 1.00e-86 310.00
IUUC-Mor-057241 Magnaporthe oryzae 54.27 2.00e-86 309.00
IUUC-Mpo-057373 Magnaporthe poae 49.17 5.00e-72 261.00
IUUC-Mtr-058412 Medicago truncatula 51.36 6.00e-75 271.00
IUUC-Mla-058966 Melampsora laricipopulina 51.99 6.00e-93 331.00
IUUC-Mga-060066 Meleagris gallopavo 52.71 5.00e-82 295.00
IUUC-Mvi-060290 Microbotryum violaceum 51.10 1.00e-82 300.00
IUUC-Mmr-060717 Microcebus murinus 52.25 3.00e-86 309.00
IUUC-Mdo-062496 Monodelphis domestica 50.83 2.00e-86 310.00
IUUC-Mmu-063490 Mus musculus 52.60 9.00e-87 311.00
IUUC-Mac-065307 Musa acuminata 50.00 4.00e-75 273.00
IUUC-Mpu-066601 Mustela putorius furo 52.60 1.00e-86 310.00
IUUC-Mlu-067501 Myotis lucifugus 51.16 7.00e-87 311.00
IUUC-Nfi-068360 Neosartorya fischeri 51.55 5.00e-68 248.00
IUUC-Ncr-068928 Neurospora crassa 56.66 1.00e-90 323.00
IUUC-Nle-069028 Nomascus leucogenys 51.90 9.00e-86 308.00
IUUC-Opr-070446 Ochotona princeps 51.61 1.00e-79 287.00
IUUC-Ont-071587 Oreochromis niloticus 50.83 6.00e-86 308.00
IUUC-Oan-073211 Ornithorhynchus anatinus 49.83 3.00e-85 306.00
IUUC-Ocu-074306 Oryctolagus cuniculus 51.66 2.00e-87 313.00
IUUC-Oba-075069 Oryza barthii 47.19 9.00e-73 264.00
IUUC-Obr-076667 Oryza brachyantha 47.85 1.00e-73 267.00
IUUC-Ogl-077208 Oryza glaberrima 47.19 9.00e-73 264.00
IUUC-Ogu-078513 Oryza glumaepatula 47.19 9.00e-73 264.00
IUUC-Oin-079094 Oryza indica 47.19 9.00e-73 264.00
IUUC-Olo-080473 Oryza longistaminata 47.19 9.00e-73 264.00
IUUC-Ome-081643 Oryza meridionalis 47.19 9.00e-73 264.00
IUUC-Oni-082589 Oryza nivara 47.19 9.00e-73 264.00
IUUC-Opu-083677 Oryza punctata 47.19 1.00e-72 264.00
IUUC-Oru-084537 Oryza rufipogon 47.19 9.00e-73 264.00
IUUC-Osa-085449 Oryza sativa 47.19 9.00e-73 264.00
IUUC-Ola-087226 Oryzias latipes 51.16 2.00e-86 310.00
IUUC-Olu-087893 Ostreococcus lucimarinus 50.70 2.00e-68 250.00
IUUC-Oga-088837 Otolemur garnettii 52.60 3.00e-86 310.00
IUUC-Oar-089594 Ovis aries 52.60 5.00e-86 308.00
IUUC-Ptr-091132 Pan troglodytes 52.25 3.00e-86 309.00
IUUC-Psi-093568 Pelodiscus sinensis 53.05 8.00e-83 298.00
IUUC-Pma-094756 Petromyzon marinus 52.78 2.00e-34 135.00
IUUC-Pno-094955 Phaeosphaeria nodorum 55.36 1.00e-84 303.00
IUUC-Ppa-095835 Physcomitrella patens 53.10 2.00e-76 276.00
IUUC-Pfo-096063 Poecilia formosa 51.16 2.00e-86 310.00
IUUC-Pab-098674 Pongo abelii 51.90 4.00e-85 306.00
IUUC-Pop-099402 Populus trichocarpa 50.00 5.00e-75 272.00
IUUC-Pca-100824 Procavia capensis 53.68 1.00e-60 224.00
IUUC-Ppe-101707 Prunus persica 49.49 4.00e-73 266.00
IUUC-Pva-103161 Pteropus vampyrus 48.79 1.00e-79 287.00
IUUC-Pgr-103573 Puccinia graminis 54.40 8.00e-93 331.00
IUUC-Ptt-103700 Puccinia triticina 54.19 2.00e-88 317.00
IUUC-Pte-104267 Pyrenophora teres 54.96 3.00e-83 299.00
IUUC-Pyt-104535 Pyrenophora triticirepentis 55.67 8.00e-81 291.00
IUUC-Rno-104833 Rattus norvegicus 52.25 3.00e-86 309.00
IUUC-Sce-106437 Saccharomyces cerevisiae 55.18 5.00e-91 325.00
IUUC-Sha-106611 Sarcophilus harrisii 51.16 1.00e-86 310.00
IUUC-Sja-107654 Schizosaccharomyces japonicus 79.87 3.00e-146 508.00
IUUC-Smo-108797 Selaginella moellendorffii 50.33 1.00e-75 274.00
IUUC-Sit-110132 Setaria italica 47.85 1.00e-73 267.00
IUUC-Sly-111852 Solanum lycopersicum 51.19 4.00e-76 275.00
IUUC-Stu-112195 Solanum tuberosum 50.85 2.00e-75 273.00
IUUC-Sbi-114229 Sorghum bicolor 47.85 2.00e-73 266.00
IUUC-Sre-114898 Sporisorium reilianum 47.69 2.00e-88 317.00
IUUC-Ssc-115995 Sus scrofa 55.86 1.00e-47 179.00
IUUC-Tgu-116793 Taeniopygia guttata 52.25 9.00e-82 294.00
IUUC-Tru-117797 Takifugu rubripes 51.16 4.00e-86 309.00
IUUC-Tni-120366 Tetraodon nigroviridis 50.83 9.00e-86 308.00
IUUC-Tca-121068 Theobroma cacao 49.66 2.00e-74 270.00
IUUC-Tre-121899 Trichoderma reesei 54.64 5.00e-88 315.00
IUUC-Tvi-122380 Trichoderma virens 55.15 6.00e-89 318.00
IUUC-Tae-123998 Triticum aestivum 48.51 3.00e-75 273.00
IUUC-Tur-126202 Triticum urartu 48.18 5.00e-75 271.00
IUUC-Tme-127181 Tuber melanosporum 57.81 6.00e-98 348.00
IUUC-Ttr-128448 Tursiops truncatus 44.29 1.00e-65 241.00
IUUC-Uma-129661 Ustilago maydis 48.25 1.00e-89 320.00
IUUC-Vda-129666 Verticillium dahliae 55.48 4.00e-86 308.00
IUUC-Vpa-130318 Vicugna pacos 50.83 5.00e-86 308.00
IUUC-Vvi-130868 Vitis vinifera 49.50 2.00e-75 273.00
IUUC-Xtr-131859 Xenopus tropicalis 50.50 1.00e-85 307.00
IUUC-Xma-133898 Xiphophorus maculatus 51.16 1.00e-86 310.00
IUUC-Yli-134559 Yarrowia lipolytica 59.23 3.00e-103 365.00
Created Date 25-Jun-2017

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