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Tag Content
UUCD2 ID IUUC-Bta-013002
UUCD1 version UUC-BoT-00560
Ensembl Protein ID ENSBTAP00000017712.4
UniProt Accession F1MSN8; F1MSN8_BOVIN
Genbank Protein ID ENSBTAP00000017712
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID DAAA02001689
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSBTAG00000013317.4 ENSBTAT00000017712.4 ENSBTAP00000017712.4
ENSBTAG00000013317.4 ENSBTAT00000056454.2 ENSBTAP00000053137.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 1.10e-10 41.1 168 191
E3 activity/RING/RING 9.20e-06 26.2 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q+++D+ELA++L+ +++++++
   Q: 168 MEEQLKSDEELARRLSLDINNFCE 191
    89********************97 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
    C iC e +++ p++lpC+H+ ++ C+ + ++ + CP Cr
   Q: 16 CQICVEILFE-PVTLPCNHTLCKPCFeSTV------EKASLCCPFCR 55
    9*********.9**************6666......**********8 PP
   

Organism Bos taurus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPKESIPS LLECQCQICV EILFEPVTLP CNHTLCKPCF ESTVEKASLC CPFCRRRVSS 60
WARYRSRTNS LVNMELWEII QKHYPKECKL RASGQESKEI VDDYQPVRLL SKPGELRREY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Bta-013002|E3,RING;UBD,MIU|Bos taurus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGAGGGGCCG TTTTGGCGGG CTGTCGTGAC GCCACTAGCC CTTGCGGGAT TCTGAGGCAC 60
CGCCGCTAAG ATTAGGCTTT CTGGCTGACT TTAGAGAGGA CGAGGGGTGG GCTCAGAATC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Bta-013002|E3,RING;UBD,MIU|Bos taurus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG bta:613812
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 77.31 0.00e+00 733.00
IUUC-Atr-002992 Amborella trichopoda 39.73 5.00e-10 58.50
IUUC-Apl-003963 Anas platyrhynchos 46.51 1.00e-70 260.00
IUUC-Aca-004420 Anolis carolinensis 67.23 4.00e-45 176.00
IUUC-Ath-007019 Arabidopsis thaliana 42.67 2.00e-11 64.70
IUUC-Ame-011521 Astyanax mexicanus 52.27 2.00e-35 143.00
IUUC-Bol-016180 Brassica oleracea 41.33 2.00e-11 63.20
IUUC-Bra-017905 Brassica rapa 41.33 2.00e-11 63.20
IUUC-Cja-019945 Callithrix jacchus 72.08 0.00e+00 672.00
IUUC-Cfa-020533 Canis familiaris 75.74 0.00e+00 726.00
IUUC-Cpo-021643 Cavia porcellus 59.41 1.00e-135 476.00
IUUC-Csa-023638 Chlorocebus sabaeus 71.95 0.00e+00 711.00
IUUC-Cho-024319 Choloepus hoffmanni 71.18 0.00e+00 642.00
IUUC-Cin-025679 Ciona intestinalis 32.13 3.00e-22 99.00
IUUC-Csv-026052 Ciona savignyi 39.05 5.00e-19 87.80
IUUC-Dre-028519 Danio rerio 47.09 4.00e-37 149.00
IUUC-Dno-029294 Dasypus novemcinctus 73.57 0.00e+00 688.00
IUUC-Ete-032714 Echinops telfairi 48.20 6.00e-78 285.00
IUUC-Eca-033343 Equus caballus 77.52 0.00e+00 746.00
IUUC-Eeu-034633 Erinaceus europaeus 34.10 2.00e-21 96.70
IUUC-Fca-036251 Felis catus 77.31 0.00e+00 756.00
IUUC-Fal-037048 Ficedula albicollis 45.28 8.00e-74 271.00
IUUC-Gmo-039400 Gadus morhua 47.83 8.00e-31 125.00
IUUC-Gga-040444 Gallus gallus 40.92 6.00e-70 258.00
IUUC-Gac-041735 Gasterosteus aculeatus 52.51 2.00e-38 152.00
IUUC-Gma-044332 Glycine max 36.52 2.00e-13 70.10
IUUC-Ggo-044940 Gorilla gorilla 70.72 3.00e-142 498.00
IUUC-Hsa-046424 Homo sapiens 75.26 0.00e+00 699.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 72.01 0.00e+00 673.00
IUUC-Lch-050649 Latimeria chalumnae 39.40 4.00e-54 205.00
IUUC-Loc-051847 Lepisosteus oculatus 35.95 1.00e-44 174.00
IUUC-Laf-053938 Loxodonta africana 68.69 0.00e+00 712.00
IUUC-Mcc-055360 Macaca mulatta 71.08 0.00e+00 680.00
IUUC-Meu-056684 Macropus eugenii 50.00 6.00e-117 414.00
IUUC-Mtr-058007 Medicago truncatula 43.04 6.00e-13 68.20
IUUC-Mga-059699 Meleagris gallopavo 42.56 3.00e-70 259.00
IUUC-Mmr-060779 Microcebus murinus 75.22 0.00e+00 758.00
IUUC-Mdo-062225 Monodelphis domestica 52.91 2.00e-113 402.00
IUUC-Mmu-064239 Mus musculus 63.64 5.00e-156 544.00
IUUC-Mpu-066141 Mustela putorius furo 76.35 0.00e+00 744.00
IUUC-Mlu-067945 Myotis lucifugus 75.04 0.00e+00 727.00
IUUC-Nle-069769 Nomascus leucogenys 74.56 0.00e+00 704.00
IUUC-Opr-070905 Ochotona princeps 61.85 2.00e-165 575.00
IUUC-Ont-071477 Oreochromis niloticus 53.04 2.00e-33 136.00
IUUC-Oan-073531 Ornithorhynchus anatinus 45.48 2.00e-56 213.00
IUUC-Ocu-073832 Oryctolagus cuniculus 68.47 3.00e-179 621.00
IUUC-Ogu-078203 Oryza glumaepatula 39.73 6.00e-10 58.50
IUUC-Opu-083547 Oryza punctata 41.33 6.00e-11 61.60
IUUC-Ola-086478 Oryzias latipes 50.43 3.00e-32 130.00
IUUC-Oga-088318 Otolemur garnettii 74.26 0.00e+00 713.00
IUUC-Oar-089647 Ovis aries 94.24 0.00e+00 971.00
IUUC-Ptr-090516 Pan troglodytes 75.44 0.00e+00 723.00
IUUC-Pan-092302 Papio anubis 70.78 0.00e+00 675.00
IUUC-Psi-093604 Pelodiscus sinensis 43.87 2.00e-83 303.00
IUUC-Pfo-096441 Poecilia formosa 50.00 1.00e-32 134.00
IUUC-Pab-097729 Pongo abelii 74.22 0.00e+00 705.00
IUUC-Pop-099737 Populus trichocarpa 38.64 5.00e-11 63.50
IUUC-Pca-100552 Procavia capensis 58.76 5.00e-110 391.00
IUUC-Ppe-102024 Prunus persica 37.04 5.00e-12 66.60
IUUC-Pva-102780 Pteropus vampyrus 76.91 0.00e+00 752.00
IUUC-Rno-105461 Rattus norvegicus 62.70 2.00e-156 545.00
IUUC-Sha-106809 Sarcophilus harrisii 55.88 4.00e-138 484.00
IUUC-Sly-111317 Solanum lycopersicum 41.00 1.00e-15 77.40
IUUC-Stu-112783 Solanum tuberosum 37.38 1.00e-14 74.30
IUUC-Sar-113579 Sorex araneus 59.51 1.00e-156 546.00
IUUC-Sbi-113834 Sorghum bicolor 38.82 1.00e-11 63.90
IUUC-Tgu-117187 Taeniopygia guttata 66.14 3.00e-45 174.00
IUUC-Tru-118182 Takifugu rubripes 53.72 1.00e-34 140.00
IUUC-Tsy-119217 Tarsius syrichta 56.68 2.00e-64 238.00
IUUC-Tni-120205 Tetraodon nigroviridis 53.45 9.00e-35 140.00
IUUC-Tca-121416 Theobroma cacao 44.58 5.00e-13 68.60
IUUC-Tre-121992 Trichoderma reesei 27.27 1.00e-07 51.20
IUUC-Tvi-122557 Trichoderma virens 31.71 1.00e-05 44.70
IUUC-Tur-126688 Triticum urartu 36.71 1.00e-10 60.50
IUUC-Tbe-127622 Tupaia belangeri 73.65 0.00e+00 704.00
IUUC-Ttr-128988 Tursiops truncatus 85.17 0.00e+00 844.00
IUUC-Vpa-130302 Vicugna pacos 77.46 2.00e-148 519.00
IUUC-Vvi-131424 Vitis vinifera 43.37 2.00e-11 62.80
IUUC-Xtr-132196 Xenopus tropicalis 40.38 1.00e-65 243.00
Created Date 25-Jun-2017

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