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Tag Content
UUCD2 ID IUUC-Cja-019945
UUCD1 version UUC-CaJ-00581
Ensembl Protein ID ENSCJAP00000003034.2
UniProt Accession F7GIE2; F7GIE2_CALJA
Genbank Protein ID ENSCJAP00000003034
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID ACFV01038491
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCJAG00000001693.2 ENSCJAT00000003203.2 ENSCJAP00000003034.2
ENSCJAG00000001693.2 ENSCJAT00000053529.1 ENSCJAP00000049418.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 4.00e-12 46.4 168 191
E3 activity/RING/RING 2.70e-06 28.8 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q++ D+ELA++L+++++++++
   Q: 168 MEEQLKNDEELARKLSIDINNFCE 191
    89********************97 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C iC+e +++ p++lpC+H+ ++ C+q +++ + CP Cr
   Q: 16 CGICMEILFE-PVTLPCNHTLCKPCFQST-----VEKASLCCPFCR 55
    9*********.9**************544.....5**********8 PP
   

Organism Callithrix jacchus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPKAAVPS LSECQCGICM EILFEPVTLP CNHTLCKPCF QSTVEKASLC CPFCRRRVSS 60
WTRYHTRRNS LVNLELWTII QKHYARECKL RAAGQESEEV AYDYQPVRLL SKPGELRREY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Cja-019945|E3,RING;UBD,MIU|Callithrix jacchus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGACAGGGAC GCTGAGCTCG GGAAGGTGCG CAAAGCGCCC GAAAGCTGAA CGCTGGAGTC 60
ACTTATCCAC CCAGCAGCTG CGGTAAAGCG GAAGTCCTGC TGCAGCCGGA GCCCGGGATT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Cja-019945|E3,RING;UBD,MIU|Callithrix jacchus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG cjc:100387184
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 75.13 0.00e+00 718.00
IUUC-Atr-002992 Amborella trichopoda 38.89 2.00e-10 60.10
IUUC-Apl-003963 Anas platyrhynchos 45.50 1.00e-68 253.00
IUUC-Aca-004420 Anolis carolinensis 66.67 2.00e-46 180.00
IUUC-Ath-007019 Arabidopsis thaliana 39.02 2.00e-10 61.60
IUUC-Ame-011521 Astyanax mexicanus 52.54 1.00e-35 144.00
IUUC-Bta-013002 Bos taurus 72.60 0.00e+00 714.00
IUUC-Bol-016180 Brassica oleracea 40.00 1.00e-10 60.10
IUUC-Bra-017905 Brassica rapa 40.00 1.00e-10 60.50
IUUC-Cfa-020533 Canis familiaris 75.13 0.00e+00 717.00
IUUC-Cpo-021643 Cavia porcellus 62.85 1.00e-148 520.00
IUUC-Csa-023638 Chlorocebus sabaeus 81.26 0.00e+00 851.00
IUUC-Cho-024319 Choloepus hoffmanni 72.77 0.00e+00 659.00
IUUC-Cin-025679 Ciona intestinalis 36.99 4.00e-22 98.60
IUUC-Csv-026052 Ciona savignyi 34.82 3.00e-17 82.00
IUUC-Dre-028519 Danio rerio 46.36 2.00e-36 146.00
IUUC-Dno-029294 Dasypus novemcinctus 74.52 0.00e+00 703.00
IUUC-Ete-032714 Echinops telfairi 49.10 6.00e-78 285.00
IUUC-Eca-033343 Equus caballus 76.90 0.00e+00 741.00
IUUC-Eeu-034633 Erinaceus europaeus 35.49 1.00e-27 117.00
IUUC-Fca-036251 Felis catus 75.75 0.00e+00 739.00
IUUC-Fal-037048 Ficedula albicollis 46.13 6.00e-77 281.00
IUUC-Gmo-039400 Gadus morhua 46.09 8.00e-30 122.00
IUUC-Gga-040444 Gallus gallus 42.27 3.00e-73 269.00
IUUC-Gac-041735 Gasterosteus aculeatus 52.51 1.00e-40 159.00
IUUC-Gma-044332 Glycine max 34.78 4.00e-13 69.30
IUUC-Ggo-044940 Gorilla gorilla 82.50 3.00e-180 624.00
IUUC-Hsa-046424 Homo sapiens 85.29 0.00e+00 831.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 72.79 0.00e+00 665.00
IUUC-Lch-050649 Latimeria chalumnae 38.88 3.00e-58 219.00
IUUC-Loc-051847 Lepisosteus oculatus 38.49 2.00e-52 199.00
IUUC-Laf-053938 Loxodonta africana 69.98 0.00e+00 728.00
IUUC-Mcc-055360 Macaca mulatta 81.26 0.00e+00 825.00
IUUC-Meu-056684 Macropus eugenii 50.69 2.00e-126 446.00
IUUC-Mtr-058007 Medicago truncatula 35.19 5.00e-13 68.60
IUUC-Mga-059699 Meleagris gallopavo 42.81 4.00e-74 272.00
IUUC-Mmr-060779 Microcebus murinus 76.53 0.00e+00 780.00
IUUC-Mdo-062225 Monodelphis domestica 51.46 1.00e-117 416.00
IUUC-Mmu-064239 Mus musculus 61.58 2.00e-152 532.00
IUUC-Mpu-066141 Mustela putorius furo 74.35 0.00e+00 731.00
IUUC-Mlu-067945 Myotis lucifugus 74.78 0.00e+00 740.00
IUUC-Nle-069769 Nomascus leucogenys 85.64 0.00e+00 850.00
IUUC-Opr-070905 Ochotona princeps 62.52 8.00e-174 603.00
IUUC-Ont-071477 Oreochromis niloticus 42.99 8.00e-33 134.00
IUUC-Oan-073531 Ornithorhynchus anatinus 42.68 8.00e-64 237.00
IUUC-Ocu-073832 Oryctolagus cuniculus 68.48 0.00e+00 650.00
IUUC-Ola-086478 Oryzias latipes 47.54 7.00e-31 125.00
IUUC-Oga-088318 Otolemur garnettii 75.22 0.00e+00 741.00
IUUC-Oar-089647 Ovis aries 71.90 0.00e+00 700.00
IUUC-Ptr-090516 Pan troglodytes 85.46 0.00e+00 862.00
IUUC-Pan-092302 Papio anubis 80.42 0.00e+00 822.00
IUUC-Psi-093604 Pelodiscus sinensis 42.18 6.00e-80 291.00
IUUC-Pfo-096441 Poecilia formosa 48.31 1.00e-31 130.00
IUUC-Pab-097729 Pongo abelii 84.76 0.00e+00 843.00
IUUC-Pop-099737 Populus trichocarpa 35.23 2.00e-10 61.20
IUUC-Pca-100552 Procavia capensis 59.27 4.00e-109 388.00
IUUC-Ppe-102024 Prunus persica 40.62 5.00e-12 67.00
IUUC-Pva-102780 Pteropus vampyrus 74.91 0.00e+00 731.00
IUUC-Rno-105461 Rattus norvegicus 62.85 4.00e-160 558.00
IUUC-Sha-106809 Sarcophilus harrisii 53.29 7.00e-133 467.00
IUUC-Sly-110934 Solanum lycopersicum 39.00 3.00e-14 72.80
IUUC-Stu-112446 Solanum tuberosum 38.74 5.00e-15 75.50
IUUC-Sar-113579 Sorex araneus 61.08 2.00e-158 552.00
IUUC-Tgu-117187 Taeniopygia guttata 64.65 6.00e-45 173.00
IUUC-Tru-118182 Takifugu rubripes 50.00 5.00e-32 131.00
IUUC-Tsy-119217 Tarsius syrichta 56.89 4.00e-72 264.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.00 5.00e-32 131.00
IUUC-Tca-121416 Theobroma cacao 42.17 4.00e-13 68.60
IUUC-Tvi-122557 Trichoderma virens 37.25 3.00e-05 43.10
IUUC-Tbe-127622 Tupaia belangeri 73.03 0.00e+00 723.00
IUUC-Ttr-128988 Tursiops truncatus 78.28 0.00e+00 767.00
IUUC-Vpa-130302 Vicugna pacos 69.48 1.00e-129 456.00
IUUC-Vvi-131424 Vitis vinifera 40.96 3.00e-11 62.80
Created Date 25-Jun-2017

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