• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Tag Content
UUCD2 ID IUUC-Mlu-067945
UUCD1 version UUC-MyL-00568
Ensembl Protein ID ENSMLUP00000010996.2
UniProt Accession G1PJQ9; G1PJQ9_MYOLU
Genbank Protein ID ENSMLUP00000010996
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AAPE02025174
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMLUG00000012066.2 ENSMLUT00000012070.2 ENSMLUP00000010996.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 1.70e-09 37.3 168 191
E3 activity/RING/RING 1.10e-06 29.1 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q++ D+ELA++L++ ++++++
   Q: 168 MEEQLKRDEELARKLSININNFCE 191
    89********************97 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C iC+e f++ p++lpC+H+ + C+q +++ + CP Cr
   Q: 16 CGICMEIFME-PVTLPCNHTLCNACFQST-----VEKANLCCPFCR 55
    9*********.9**************554.....5**********8 PP
   

Organism Myotis lucifugus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPQDAIPS LSECQCGICM EIFMEPVTLP CNHTLCNACF QSTVEKANLC CPFCRRRVSS 60
WTRYHTRRNS LINKELWEVI QKHYPKECKL RASGQELEDT VDDYQPVHLL SKPGELRREY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mlu-067945|E3,RING;UBD,MIU|Myotis lucifugus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGCTGTAC CTCAAGATGC CATCCCTTCC TTGTCGGAAT GCCAGTGCGG GATCTGCATG 60
GAAATCTTCA TGGAGCCGGT AACACTGCCT TGTAACCACA CGCTCTGTAA TGCATGCTTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mlu-067945|E3,RING;UBD,MIU|Myotis lucifugus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 78.28 0.00e+00 729.00
IUUC-Atr-002992 Amborella trichopoda 39.73 1.00e-10 60.80
IUUC-Apl-003963 Anas platyrhynchos 42.02 7.00e-67 248.00
IUUC-Aca-004420 Anolis carolinensis 70.09 2.00e-48 186.00
IUUC-Ath-007019 Arabidopsis thaliana 37.93 3.00e-10 60.80
IUUC-Ame-011521 Astyanax mexicanus 53.45 9.00e-36 144.00
IUUC-Bta-013002 Bos taurus 75.04 0.00e+00 720.00
IUUC-Bol-016180 Brassica oleracea 38.67 2.00e-10 59.70
IUUC-Bra-017905 Brassica rapa 38.67 2.00e-10 59.70
IUUC-Cja-019945 Callithrix jacchus 74.78 0.00e+00 699.00
IUUC-Cfa-020533 Canis familiaris 77.76 0.00e+00 728.00
IUUC-Cpo-021643 Cavia porcellus 61.42 8.00e-147 513.00
IUUC-Csa-023638 Chlorocebus sabaeus 73.78 0.00e+00 724.00
IUUC-Cho-024319 Choloepus hoffmanni 73.60 0.00e+00 663.00
IUUC-Cin-025679 Ciona intestinalis 33.45 4.00e-23 102.00
IUUC-Csv-026052 Ciona savignyi 39.29 2.00e-20 92.40
IUUC-Cgl-026426 Colletotrichum gloeosporioides 29.52 5.00e-09 55.50
IUUC-Dre-028519 Danio rerio 44.20 7.00e-35 141.00
IUUC-Dno-029294 Dasypus novemcinctus 76.36 0.00e+00 722.00
IUUC-Ete-032714 Echinops telfairi 50.78 1.00e-88 320.00
IUUC-Eca-033343 Equus caballus 78.28 0.00e+00 761.00
IUUC-Eeu-034633 Erinaceus europaeus 35.40 2.00e-25 109.00
IUUC-Fca-036251 Felis catus 78.98 0.00e+00 767.00
IUUC-Fal-037048 Ficedula albicollis 47.15 1.00e-79 290.00
IUUC-Fox-037926 Fusarium oxysporum 27.18 1.00e-08 53.10
IUUC-Gmo-039400 Gadus morhua 45.22 1.00e-30 125.00
IUUC-Gga-040444 Gallus gallus 41.65 5.00e-69 255.00
IUUC-Gac-041735 Gasterosteus aculeatus 51.40 5.00e-40 157.00
IUUC-Gma-044332 Glycine max 36.47 2.00e-12 67.00
IUUC-Ggo-044940 Gorilla gorilla 72.82 2.00e-146 512.00
IUUC-Hsa-046424 Homo sapiens 77.27 0.00e+00 717.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 73.81 0.00e+00 671.00
IUUC-Lch-050649 Latimeria chalumnae 38.43 3.00e-56 213.00
IUUC-Loc-051847 Lepisosteus oculatus 36.95 3.00e-48 186.00
IUUC-Laf-053938 Loxodonta africana 71.55 0.00e+00 763.00
IUUC-Mcc-055360 Macaca mulatta 73.43 0.00e+00 694.00
IUUC-Meu-056684 Macropus eugenii 50.70 2.00e-118 419.00
IUUC-Mga-059699 Meleagris gallopavo 43.10 7.00e-71 261.00
IUUC-Mmr-060779 Microcebus murinus 76.18 0.00e+00 763.00
IUUC-Mdo-062225 Monodelphis domestica 55.31 3.00e-120 425.00
IUUC-Mmu-064239 Mus musculus 64.34 7.00e-156 543.00
IUUC-Mpu-066141 Mustela putorius furo 78.98 0.00e+00 768.00
IUUC-Nle-069769 Nomascus leucogenys 77.45 0.00e+00 728.00
IUUC-Opr-070905 Ochotona princeps 62.17 3.00e-167 582.00
IUUC-Ont-071477 Oreochromis niloticus 51.24 3.00e-35 142.00
IUUC-Oan-073531 Ornithorhynchus anatinus 43.62 2.00e-61 229.00
IUUC-Ocu-073832 Oryctolagus cuniculus 69.70 0.00e+00 646.00
IUUC-Opu-083547 Oryza punctata 37.33 2.00e-10 60.10
IUUC-Ola-086478 Oryzias latipes 49.59 4.00e-34 136.00
IUUC-Oga-088318 Otolemur garnettii 76.09 0.00e+00 739.00
IUUC-Oar-089647 Ovis aries 72.95 0.00e+00 696.00
IUUC-Ptr-090516 Pan troglodytes 77.45 0.00e+00 737.00
IUUC-Pan-092302 Papio anubis 72.95 0.00e+00 696.00
IUUC-Psi-093604 Pelodiscus sinensis 41.77 1.00e-82 300.00
IUUC-Pfo-096441 Poecilia formosa 45.16 5.00e-32 131.00
IUUC-Pab-097729 Pongo abelii 75.87 0.00e+00 712.00
IUUC-Pop-099737 Populus trichocarpa 35.29 6.00e-10 60.10
IUUC-Pca-100552 Procavia capensis 62.08 1.00e-116 413.00
IUUC-Pva-102780 Pteropus vampyrus 81.79 0.00e+00 815.00
IUUC-Rno-105461 Rattus norvegicus 63.99 8.00e-158 550.00
IUUC-Sha-106809 Sarcophilus harrisii 56.77 3.00e-139 488.00
IUUC-Sly-111317 Solanum lycopersicum 37.00 2.00e-14 73.20
IUUC-Stu-112446 Solanum tuberosum 36.84 7.00e-14 71.60
IUUC-Sar-113579 Sorex araneus 63.11 2.00e-164 572.00
IUUC-Tgu-117187 Taeniopygia guttata 69.84 4.00e-51 194.00
IUUC-Tru-118182 Takifugu rubripes 49.14 1.00e-32 134.00
IUUC-Tsy-119217 Tarsius syrichta 58.75 5.00e-70 257.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.82 3.00e-34 139.00
IUUC-Tca-121416 Theobroma cacao 36.47 1.00e-12 67.00
IUUC-Tre-121992 Trichoderma reesei 29.63 1.00e-08 54.30
IUUC-Tvi-122557 Trichoderma virens 28.87 1.00e-05 44.70
IUUC-Tbe-127622 Tupaia belangeri 74.61 0.00e+00 734.00
IUUC-Ttr-128988 Tursiops truncatus 80.56 0.00e+00 780.00
IUUC-Vpa-130302 Vicugna pacos 72.09 8.00e-134 470.00
IUUC-Vvi-131424 Vitis vinifera 35.29 7.00e-11 61.20
IUUC-Xtr-132196 Xenopus tropicalis 54.41 3.00e-54 206.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved