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Tag Content
UUCD2 ID IUUC-Oga-088318
UUCD1 version UUC-OtG-00116
Ensembl Protein ID ENSOGAP00000001068.2
UniProt Accession H0WI34; H0WI34_OTOGA
Genbank Protein ID ENSOGAP00000001068
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AAQR03094175
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSOGAG00000001195.2 ENSOGAT00000001195.2 ENSOGAP00000001068.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 7.80e-11 41.5 440 463
E3 activity/RING/RING 5.20e-07 30.1 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    r+kQ+++D++LA+qLQ+E++++++
   Q: 440 RHKQEEQDRLLALQLQKEVDKEQM 463
    8********************997 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C iC+e + + p++lpC+H+ + C+q +++ + +CP Cr
   Q: 16 CQICMEILIE-PVTLPCNHTLCNPCFQST-----VEKANLSCPFCR 55
    9*********.9**************544.....5**********8 PP
   

Organism Otolemur garnettii
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPKDIIPS LSDCQCQICM EILIEPVTLP CNHTLCNPCF QSTVEKANLS CPFCRRRVSS 60
WTRYHTRKNT LINMELWNII QKHYPRECKL RASGQESEEI ETVDDYQPVH LLSKPGELRR 120
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Protein Fasta Sequence



>IUUC-Oga-088318|E3,RING;UBD,MIU|Otolemur garnettii
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGCCGTAC CCAAAGACAT CATCCCTTCC TTGTCGGATT GCCAGTGCCA AATCTGTATG 60
GAAATTCTGA TCGAGCCTGT AACCCTCCCA TGTAATCACA CACTGTGTAA TCCGTGTTTC 120
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Nucleotide Fasta Sequence



>IUUC-Oga-088318|E3,RING;UBD,MIU|Otolemur garnettii
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 77.49 0.00e+00 759.00
IUUC-Atr-002992 Amborella trichopoda 40.00 3.00e-11 62.40
IUUC-Apl-003963 Anas platyrhynchos 46.65 2.00e-71 263.00
IUUC-Aca-004420 Anolis carolinensis 67.54 2.00e-43 170.00
IUUC-Ame-011521 Astyanax mexicanus 55.86 4.00e-35 142.00
IUUC-Bta-013002 Bos taurus 74.26 0.00e+00 724.00
IUUC-Cja-019945 Callithrix jacchus 75.22 0.00e+00 718.00
IUUC-Cfa-020533 Canis familiaris 75.57 0.00e+00 736.00
IUUC-Cpo-021643 Cavia porcellus 61.49 7.00e-146 510.00
IUUC-Csa-023638 Chlorocebus sabaeus 73.52 0.00e+00 744.00
IUUC-Cho-024319 Choloepus hoffmanni 73.26 0.00e+00 668.00
IUUC-Cin-025679 Ciona intestinalis 36.52 1.00e-20 93.20
IUUC-Csv-026052 Ciona savignyi 40.23 2.00e-18 86.30
IUUC-Cgl-026426 Colletotrichum gloeosporioides 31.13 2.00e-09 57.40
IUUC-Dre-028519 Danio rerio 47.30 5.00e-33 135.00
IUUC-Dno-029294 Dasypus novemcinctus 76.52 0.00e+00 730.00
IUUC-Ete-032714 Echinops telfairi 51.03 2.00e-87 316.00
IUUC-Eca-033343 Equus caballus 78.24 0.00e+00 757.00
IUUC-Eeu-034633 Erinaceus europaeus 36.27 3.00e-27 115.00
IUUC-Fca-036251 Felis catus 76.18 0.00e+00 746.00
IUUC-Fal-037048 Ficedula albicollis 47.04 3.00e-78 286.00
IUUC-Gmo-039400 Gadus morhua 48.18 7.00e-29 119.00
IUUC-Gga-040444 Gallus gallus 42.72 3.00e-70 259.00
IUUC-Gac-041735 Gasterosteus aculeatus 53.59 4.00e-37 147.00
IUUC-Ggo-044940 Gorilla gorilla 73.82 1.00e-157 549.00
IUUC-Hsa-046424 Homo sapiens 77.70 0.00e+00 734.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 76.01 0.00e+00 712.00
IUUC-Kpa-049137 Komagataella pastoris 30.43 5.00e-09 55.50
IUUC-Lch-050649 Latimeria chalumnae 40.92 6.00e-59 221.00
IUUC-Loc-051847 Lepisosteus oculatus 36.78 2.00e-46 179.00
IUUC-Laf-053938 Loxodonta africana 72.00 0.00e+00 759.00
IUUC-Mcc-055360 Macaca mulatta 73.69 0.00e+00 734.00
IUUC-Meu-056684 Macropus eugenii 50.09 3.00e-117 415.00
IUUC-Mtr-058007 Medicago truncatula 32.98 3.00e-13 69.30
IUUC-Mga-059699 Meleagris gallopavo 43.72 3.00e-72 266.00
IUUC-Mmr-060779 Microcebus murinus 81.82 0.00e+00 850.00
IUUC-Mdo-062225 Monodelphis domestica 54.36 1.00e-121 430.00
IUUC-Mmu-064239 Mus musculus 63.53 3.00e-162 564.00
IUUC-Mpu-066141 Mustela putorius furo 76.52 0.00e+00 764.00
IUUC-Mlu-067945 Myotis lucifugus 76.09 0.00e+00 759.00
IUUC-Nle-069769 Nomascus leucogenys 77.53 0.00e+00 761.00
IUUC-Opr-070905 Ochotona princeps 61.67 2.00e-167 582.00
IUUC-Ont-071477 Oreochromis niloticus 50.44 1.00e-30 127.00
IUUC-Oan-073531 Ornithorhynchus anatinus 43.88 1.00e-64 240.00
IUUC-Ocu-073832 Oryctolagus cuniculus 68.94 0.00e+00 634.00
IUUC-Ola-086478 Oryzias latipes 49.15 1.00e-30 124.00
IUUC-Oar-089647 Ovis aries 72.52 0.00e+00 704.00
IUUC-Ptr-090516 Pan troglodytes 77.53 0.00e+00 760.00
IUUC-Pan-092302 Papio anubis 73.00 0.00e+00 733.00
IUUC-Psi-093604 Pelodiscus sinensis 43.21 9.00e-82 297.00
IUUC-Pfo-096441 Poecilia formosa 52.25 3.00e-31 129.00
IUUC-Pab-097729 Pongo abelii 76.48 0.00e+00 744.00
IUUC-Pop-099737 Populus trichocarpa 34.12 1.00e-10 62.00
IUUC-Pca-100552 Procavia capensis 62.66 2.00e-120 426.00
IUUC-Ppe-102024 Prunus persica 40.45 1.00e-12 68.60
IUUC-Pva-102780 Pteropus vampyrus 76.74 0.00e+00 763.00
IUUC-Rno-105461 Rattus norvegicus 63.53 6.00e-161 560.00
IUUC-Sha-106809 Sarcophilus harrisii 57.51 1.00e-145 509.00
IUUC-Sja-107830 Schizosaccharomyces japonicus 30.61 5.00e-09 55.50
IUUC-Spo-108067 Schizosaccharomyces pombe 32.53 1.00e-07 51.20
IUUC-Sly-111317 Solanum lycopersicum 38.64 2.00e-14 73.20
IUUC-Stu-112783 Solanum tuberosum 40.00 9.00e-14 71.20
IUUC-Sar-113579 Sorex araneus 60.25 5.00e-156 544.00
IUUC-Tgu-117187 Taeniopygia guttata 63.33 2.00e-46 178.00
IUUC-Tru-118182 Takifugu rubripes 51.33 2.00e-31 130.00
IUUC-Tsy-119217 Tarsius syrichta 58.51 8.00e-74 270.00
IUUC-Tni-120205 Tetraodon nigroviridis 52.59 2.00e-31 129.00
IUUC-Tca-121416 Theobroma cacao 38.75 7.00e-13 67.80
IUUC-Tre-121992 Trichoderma reesei 32.14 2.00e-08 53.90
IUUC-Tvi-122557 Trichoderma virens 33.73 3.00e-05 43.10
IUUC-Tbe-127622 Tupaia belangeri 76.27 0.00e+00 767.00
IUUC-Ttr-128988 Tursiops truncatus 80.28 0.00e+00 794.00
IUUC-Vpa-130302 Vicugna pacos 74.71 6.00e-147 514.00
IUUC-Vvi-131424 Vitis vinifera 37.50 3.00e-11 62.40
IUUC-Xtr-132196 Xenopus tropicalis 40.00 4.00e-63 235.00
Created Date 25-Jun-2017

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