iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099854

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_820827; POPTR_0008s17140g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s17140	POPTR_0008s17140.1	POPTR_0008s17140.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.20e-16	60.8	1	68
E3 adaptor/Cullin RING/DCX/DWD	3.40e-27	94.4	264	294
UBD/Beta-Prp	4.50e-50	171.6	221	467

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 6    flCpIslelMrdPvvlp.sGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           ++C+Is+e++++Pvv++ sG  y+++ Ie++++++gk cP+t++plt +d+vP +t + +  + +++ s
   Q: 1    MHCSISGEVPEQPVVSKkSGLLYEKRLIERHISEYGK-CPITGEPLTMDDIVPVKTGKIVKPRTVQTAS 68
           58***********************************.*********************9998888766 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+ +vt+++f  +  ++++Gs D+ti+vW 
   Q: 264  GHSKKVTSVKFvAEgEFFLTGSADKTIRVWQ 294
           8***********5559**************6 PP

UBD/Beta-Prp

   S: 49   sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletg...qcleetlsgh 136
           +  ++++ +++++ +++i++tg+ D+t+ v+d  +g++v+tl+gh+++v+s++f ++g+++++Gs+d+tirvw+ +++    c + +l+ h
   Q: 221  KTSKPGILSIDIQYSKDIIATGGVDATAVVFDRLSGQIVSTLSGHSKKVTSVKFVAEGEFFLTGSADKTIRVWQGSEDgnyDCRH-ILKDH 310
           556789******************************************************************9766541115665.***** PP
   S: 137  dgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl..tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnv 225
           ++ v+ v+vh ++n++v++slD+t  ++dl++g ++++   t+ +td  +s +f+++g  l +g     vk+wd++++  v +++gh  +v
   Q: 311  TAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCMTQVadTS-KTDGYTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPV 400
           ***************************************9766.9********************************************** PP
   S: 226  ksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwkl 294
           + + fs+n+ +l++++ + s+++Wdlr+ ++ +tl+l  +s ++   ++f+++  +lg + s+++++++
   Q: 401  TAISFSENGYFLATAA-HDSVKLWDLRKLKNFRTLNLY-DSDTPTNSVEFDHSGSYLGIAGSDIRVYQV 467
           ******8888888886.679*****************5.577777777999999999999999***987 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MHCSISGEVP EQPVVSKKSG LLYEKRLIER HISEYGKCPI TGEPLTMDDI VPVKTGKIVK 60
PRTVQTASIP GMLGMFQNEW DGLMLSNFAL EQQLHTARQE LSHALYQHDA ACRVIARLKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGCTAGCAA TTAAAGTCCT GCCTCTTTCT TGCTCCAGCT GCTGCTGCTG CTCAATTTTC 60
CCCCTAATAA TCTTTCATTT TACTTAATTA AGCTGTAGCT CTAGCCAGTC GCCAGATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR013915--Pre-mRNA_splic_Prp19
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08606--Prp19
PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0000974--C:Prp19 complex
GO:0071006--C:U2-type catalytic step 1 spliceosome
GO:0004842--F:ubiquitin-protein transferase activity
GO:0000349--P:generation of catalytic spliceosome for first transesterification step

KEGG

pop:POPTR_0008s17140g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000488	Aegilops tauschii	70.18	0.00e+00	756.00
IUUC-Aml-001230	Ailuropoda melanoleuca	44.25	1.00e-109	389.00
IUUC-Atr-002594	Amborella trichopoda	76.91	0.00e+00	853.00
IUUC-Apl-003686	Anas platyrhynchos	43.50	6.00e-83	300.00
IUUC-Aca-005272	Anolis carolinensis	44.98	1.00e-115	409.00
IUUC-Aly-005586	Arabidopsis lyrata	76.11	0.00e+00	835.00
IUUC-Ath-007696	Arabidopsis thaliana	75.14	0.00e+00	818.00
IUUC-Acl-008335	Aspergillus clavatus	33.91	9.00e-60	224.00
IUUC-Afl-008527	Aspergillus flavus	33.33	1.00e-64	239.00
IUUC-Afu-008957	Aspergillus fumigatus	35.21	7.00e-71	260.00
IUUC-Ani-009280	Aspergillus nidulans	34.58	2.00e-63	235.00
IUUC-Ate-010412	Aspergillus terreus	35.21	3.00e-62	232.00
IUUC-Ame-011561	Astyanax mexicanus	39.69	1.00e-40	159.00
IUUC-Bgr-012283	Blumeria graminis	31.97	2.00e-54	206.00
IUUC-Bta-013242	Bos taurus	45.28	1.00e-115	409.00
IUUC-Bci-013901	Botrytis cinerea	33.85	1.00e-67	249.00
IUUC-Bdi-014277	Brachypodium distachyon	74.37	0.00e+00	825.00
IUUC-Bol-016207	Brassica oleracea	74.37	0.00e+00	821.00
IUUC-Bra-017650	Brassica rapa	76.88	0.00e+00	833.00
IUUC-Cel-018271	Caenorhabditis elegans	40.77	1.00e-100	359.00
IUUC-Cja-019879	Callithrix jacchus	45.19	5.00e-114	404.00
IUUC-Cfa-020175	Canis familiaris	44.79	2.00e-115	408.00
IUUC-Cpo-022379	Cavia porcellus	45.09	3.00e-115	408.00
IUUC-Cre-022993	Chlamydomonas reinhardtii	47.69	1.00e-133	469.00
IUUC-Csa-023500	Chlorocebus sabaeus	45.09	4.00e-115	407.00
IUUC-Cho-025065	Choloepus hoffmanni	37.22	8.00e-44	170.00
IUUC-Cin-025699	Ciona intestinalis	45.91	6.00e-105	374.00
IUUC-Csv-026128	Ciona savignyi	43.69	2.00e-116	412.00
IUUC-Cne-026860	Cryptococcus neoformans	38.36	3.00e-93	335.00
IUUC-Cme-027168	Cyanidioschyzon merolae	26.90	1.00e-19	91.30
IUUC-Dre-028187	Danio rerio	44.21	3.00e-112	397.00
IUUC-Dno-029453	Dasypus novemcinctus	45.09	6.00e-115	407.00
IUUC-Dor-030150	Dipodomys ordii	44.00	3.00e-40	159.00
IUUC-Dse-031220	Dothistroma septosporum	31.81	6.00e-62	231.00
IUUC-Dme-031906	Drosophila melanogaster	44.72	3.00e-109	388.00
IUUC-Ete-033035	Echinops telfairi	43.28	2.00e-54	206.00
IUUC-Eca-033478	Equus caballus	45.28	2.00e-115	408.00
IUUC-Eeu-034974	Erinaceus europaeus	44.84	3.00e-75	275.00
IUUC-Fca-036194	Felis catus	44.04	8.00e-114	403.00
IUUC-Fal-037417	Ficedula albicollis	44.98	1.00e-115	409.00
IUUC-Gmo-038713	Gadus morhua	44.21	5.00e-113	400.00
IUUC-Gga-041143	Gallus gallus	45.17	6.00e-116	410.00
IUUC-Gac-042129	Gasterosteus aculeatus	44.59	2.00e-114	405.00
IUUC-Gma-043635	Glycine max	82.48	0.00e+00	931.00
IUUC-Ggo-045262	Gorilla gorilla	45.09	4.00e-115	407.00
IUUC-Hsa-046036	Homo sapiens	45.09	4.00e-115	407.00
IUUC-Hvu-047442	Hordeum vulgare	71.02	2.00e-135	474.00
IUUC-Itr-048169	Ictidomys tridecemlineatus	44.21	3.00e-112	397.00
IUUC-Kpa-049195	Komagataella pastoris	43.18	3.00e-19	89.40
IUUC-Lch-050105	Latimeria chalumnae	44.21	2.00e-112	398.00
IUUC-Lpe-050976	Leersia perrieri	74.57	0.00e+00	814.00
IUUC-Loc-052042	Lepisosteus oculatus	39.13	4.00e-79	288.00
IUUC-Lma-053143	Leptosphaeria maculans	33.05	4.00e-63	236.00
IUUC-Laf-053451	Loxodonta africana	43.66	6.00e-112	397.00
IUUC-Mcc-055786	Macaca mulatta	45.09	4.00e-115	407.00
IUUC-Meu-056161	Macropus eugenii	41.53	2.00e-48	186.00
IUUC-Mor-057215	Magnaporthe oryzae	33.52	1.00e-61	229.00
IUUC-Mpo-057419	Magnaporthe poae	31.35	1.00e-52	199.00
IUUC-Mtr-057756	Medicago truncatula	76.36	0.00e+00	851.00
IUUC-Mla-059085	Melampsora laricipopulina	35.96	2.00e-80	292.00
IUUC-Mga-060158	Meleagris gallopavo	43.87	1.00e-101	362.00
IUUC-Mvi-060441	Microbotryum violaceum	35.22	9.00e-73	267.00
IUUC-Mmr-061085	Microcebus murinus	45.09	4.00e-115	407.00
IUUC-Mdo-061804	Monodelphis domestica	45.09	4.00e-115	407.00
IUUC-Mmu-063608	Mus musculus	43.49	1.00e-111	396.00
IUUC-Mac-064972	Musa acuminata	75.96	0.00e+00	832.00
IUUC-Mpu-065700	Mustela putorius furo	44.79	2.00e-115	409.00
IUUC-Mlu-068223	Myotis lucifugus	43.82	7.00e-112	397.00
IUUC-Nfi-068504	Neosartorya fischeri	35.34	1.00e-70	260.00
IUUC-Ncr-068729	Neurospora crassa	32.99	1.00e-57	216.00
IUUC-Nle-069754	Nomascus leucogenys	45.09	4.00e-115	407.00
IUUC-Opr-070621	Ochotona princeps	46.35	3.00e-108	384.00
IUUC-Ont-071377	Oreochromis niloticus	44.59	1.00e-112	399.00
IUUC-Oan-073498	Ornithorhynchus anatinus	32.73	6.00e-35	140.00
IUUC-Ocu-074182	Oryctolagus cuniculus	43.33	3.00e-111	395.00
IUUC-Oba-075509	Oryza barthii	74.38	0.00e+00	831.00
IUUC-Obr-076480	Oryza brachyantha	75.34	0.00e+00	835.00
IUUC-Ogl-077052	Oryza glaberrima	74.38	0.00e+00	832.00
IUUC-Ogu-078919	Oryza glumaepatula	74.57	0.00e+00	832.00
IUUC-Oin-079357	Oryza indica	71.68	0.00e+00	773.00
IUUC-Olo-080376	Oryza longistaminata	74.29	0.00e+00	777.00
IUUC-Ome-081973	Oryza meridionalis	74.49	0.00e+00	778.00
IUUC-Oni-082849	Oryza nivara	74.19	0.00e+00	830.00
IUUC-Opu-083243	Oryza punctata	74.57	0.00e+00	832.00
IUUC-Oru-084613	Oryza rufipogon	74.43	0.00e+00	828.00
IUUC-Osa-085407	Oryza sativa	74.19	0.00e+00	828.00
IUUC-Ola-086566	Oryzias latipes	43.95	7.00e-112	397.00
IUUC-Olu-087757	Ostreococcus lucimarinus	43.91	2.00e-115	409.00
IUUC-Oga-089010	Otolemur garnettii	43.26	1.00e-109	389.00
IUUC-Oar-089638	Ovis aries	45.28	1.00e-115	409.00
IUUC-Ptr-091141	Pan troglodytes	45.09	4.00e-115	407.00
IUUC-Pan-092662	Papio anubis	45.09	4.00e-115	407.00
IUUC-Psi-093777	Pelodiscus sinensis	45.08	2.00e-90	325.00
IUUC-Pno-095115	Phaeosphaeria nodorum	33.88	6.00e-64	237.00
IUUC-Ppa-095924	Physcomitrella patens	70.99	0.00e+00	770.00
IUUC-Pfo-096390	Poecilia formosa	44.40	4.00e-113	400.00
IUUC-Pab-098250	Pongo abelii	45.47	4.00e-111	394.00
IUUC-Pca-100553	Procavia capensis	45.09	5.00e-113	400.00
IUUC-Ppe-101383	Prunus persica	78.78	0.00e+00	848.00
IUUC-Pva-102189	Pteropus vampyrus	45.28	1.00e-115	409.00
IUUC-Pgr-103304	Puccinia graminis	35.73	5.00e-80	291.00
IUUC-Ptt-103984	Puccinia triticina	35.36	6.00e-81	294.00
IUUC-Pte-104385	Pyrenophora teres	31.54	2.00e-63	235.00
IUUC-Pyt-104697	Pyrenophora triticirepentis	32.14	4.00e-63	234.00
IUUC-Rno-105581	Rattus norvegicus	45.09	3.00e-115	408.00
IUUC-Sce-106147	Saccharomyces cerevisiae	38.46	1.00e-23	103.00
IUUC-Sha-107071	Sarcophilus harrisii	43.25	3.00e-111	395.00
IUUC-Ssl-108628	Sclerotinia sclerotiorum	33.91	2.00e-63	236.00
IUUC-Smo-109648	Selaginella moellendorffii	66.67	0.00e+00	738.00
IUUC-Sit-109873	Setaria italica	74.81	0.00e+00	825.00
IUUC-Sly-111673	Solanum lycopersicum	82.85	0.00e+00	880.00
IUUC-Stu-112125	Solanum tuberosum	83.24	0.00e+00	882.00
IUUC-Sbi-114696	Sorghum bicolor	68.28	0.00e+00	716.00
IUUC-Sre-115134	Sporisorium reilianum	32.97	3.00e-77	282.00
IUUC-Ssc-116260	Sus scrofa	45.28	8.00e-116	410.00
IUUC-Tgu-116533	Taeniopygia guttata	44.98	1.00e-115	409.00
IUUC-Tru-117800	Takifugu rubripes	43.74	4.00e-113	400.00
IUUC-Tsy-118980	Tarsius syrichta	43.03	5.00e-102	363.00
IUUC-Tni-120334	Tetraodon nigroviridis	44.09	5.00e-76	277.00
IUUC-Tca-121807	Theobroma cacao	84.16	0.00e+00	936.00
IUUC-Tae-125713	Triticum aestivum	74.18	0.00e+00	823.00
IUUC-Tbe-127582	Tupaia belangeri	44.54	4.00e-75	275.00
IUUC-Ttr-128313	Tursiops truncatus	45.28	3.00e-114	405.00
IUUC-Uma-129626	Ustilago maydis	33.76	2.00e-78	286.00
IUUC-Vpa-130593	Vicugna pacos	46.57	2.00e-108	385.00
IUUC-Vvi-131668	Vitis vinifera	85.11	0.00e+00	949.00
IUUC-Xtr-132186	Xenopus tropicalis	46.49	1.00e-101	363.00
IUUC-Xma-133212	Xiphophorus maculatus	44.59	1.00e-112	399.00
IUUC-Yli-134607	Yarrowia lipolytica	52.67	4.00e-36	142.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence