iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Yli-134438

Ensembl Protein ID

CAG80024

UniProt Accession

Q6C4I9; ERB1_YARLI

Genbank Protein ID

CAG80024.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

CR382131

Gene Name

ERB1; YALI0E26389g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YALI0_E26389g	CAG80024	CAG80024

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-15	54.4	447	483

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+++v++++  ++  +l++G+dDgt++vW++ tg+ 
   Q: 447  GHKGKVRAISVdPSgEFLATGGDDGTLRVWEVLTGRE 483
           8***********666*****************99986 PP

Organism

Yarrowia lipolytica

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MVRSRSNSVK KDLKRKVDEP VDVQDEFDVE GLIDEGDSDD EDEAEQEVAQ ENVTKDKKNT 60
SKTENEEDAD DESDSDAELE ALIGEEEDLS GSELEDELAY FSDAGDDEVD PSILKHLDDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTACGAA GTCGTTCCAA CTCCGTTAAG AAGGATTTGA AGCGCAAAGT CGACGAGCCT 60
GTCGACGTGC AAGACGAGTT CGATGTCGAG GGACTCATTG ATGAGGGCGA CTCCGACGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

yli:YALI0E26389g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	38.71	1.00e-108	385.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.64	2.00e-130	457.00
IUUC-Atr-003141	Amborella trichopoda	38.34	9.00e-76	275.00
IUUC-Apl-003545	Anas platyrhynchos	40.66	1.00e-119	421.00
IUUC-Aly-005649	Arabidopsis lyrata	42.05	1.00e-141	494.00
IUUC-Ath-007625	Arabidopsis thaliana	42.05	3.00e-135	473.00
IUUC-Ago-007958	Ashbya gossypii	62.90	0.00e+00	912.00
IUUC-Acl-008344	Aspergillus clavatus	51.88	0.00e+00	686.00
IUUC-Afl-008616	Aspergillus flavus	53.23	0.00e+00	713.00
IUUC-Afu-009083	Aspergillus fumigatus	51.88	0.00e+00	663.00
IUUC-Ani-009365	Aspergillus nidulans	52.31	0.00e+00	683.00
IUUC-Ang-009796	Aspergillus niger	53.25	0.00e+00	690.00
IUUC-Aor-010015	Aspergillus oryzae	53.23	0.00e+00	712.00
IUUC-Ate-010537	Aspergillus terreus	52.08	0.00e+00	704.00
IUUC-Ame-011767	Astyanax mexicanus	51.25	2.00e-73	266.00
IUUC-Bgr-012286	Blumeria graminis	51.22	0.00e+00	714.00
IUUC-Bta-013569	Bos taurus	42.79	7.00e-145	505.00
IUUC-Bci-013820	Botrytis cinerea	53.92	0.00e+00	712.00
IUUC-Bdi-014477	Brachypodium distachyon	40.37	1.00e-132	464.00
IUUC-Bol-016099	Brassica oleracea	40.92	2.00e-134	471.00
IUUC-Bra-017174	Brassica rapa	40.76	7.00e-135	473.00
IUUC-Cel-018201	Caenorhabditis elegans	38.32	3.00e-116	410.00
IUUC-Cja-019009	Callithrix jacchus	43.68	1.00e-81	295.00
IUUC-Cfa-020173	Canis familiaris	40.18	1.00e-132	465.00
IUUC-Cpo-021796	Cavia porcellus	44.12	3.00e-80	291.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	40.63	9.00e-76	275.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.90	2.00e-149	520.00
IUUC-Cin-025782	Ciona intestinalis	41.13	6.00e-152	529.00
IUUC-Csv-026352	Ciona savignyi	42.47	2.00e-149	520.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	46.58	4.00e-163	566.00
IUUC-Cne-027004	Cryptococcus neoformans	44.22	6.00e-176	608.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.39	3.00e-114	403.00
IUUC-Dre-028658	Danio rerio	42.71	7.00e-153	532.00
IUUC-Dno-028883	Dasypus novemcinctus	43.25	3.00e-148	516.00
IUUC-Dor-031031	Dipodomys ordii	43.29	7.00e-149	518.00
IUUC-Dse-031443	Dothistroma septosporum	49.08	0.00e+00	667.00
IUUC-Dme-031786	Drosophila melanogaster	40.90	2.00e-151	527.00
IUUC-Eca-033677	Equus caballus	42.79	5.00e-144	502.00
IUUC-Eeu-035310	Erinaceus europaeus	40.00	1.00e-110	391.00
IUUC-Fca-035888	Felis catus	41.62	2.00e-143	500.00
IUUC-Fal-037438	Ficedula albicollis	52.13	2.00e-60	224.00
IUUC-Fox-037973	Fusarium oxysporum	51.31	0.00e+00	713.00
IUUC-Fso-038187	Fusarium solani	50.70	0.00e+00	712.00
IUUC-Gmo-039114	Gadus morhua	39.55	3.00e-136	476.00
IUUC-Ggr-039746	Gaeumannomyces graminis	48.95	0.00e+00	702.00
IUUC-Gga-040631	Gallus gallus	43.88	5.00e-90	322.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.52	6.00e-148	515.00
IUUC-Gma-044215	Glycine max	41.50	6.00e-138	482.00
IUUC-Ggo-045587	Gorilla gorilla	42.94	9.00e-150	521.00
IUUC-Hsa-046319	Homo sapiens	43.05	3.00e-149	520.00
IUUC-Hvu-047526	Hordeum vulgare	40.31	3.00e-128	450.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	44.84	8.00e-82	296.00
IUUC-Kpa-049221	Komagataella pastoris	57.51	0.00e+00	846.00
IUUC-Lch-049640	Latimeria chalumnae	43.98	4.00e-161	559.00
IUUC-Lpe-051135	Leersia perrieri	38.28	9.00e-119	418.00
IUUC-Loc-051930	Lepisosteus oculatus	43.87	7.00e-158	548.00
IUUC-Lma-053290	Leptosphaeria maculans	52.09	0.00e+00	709.00
IUUC-Laf-053903	Loxodonta africana	39.72	9.00e-123	432.00
IUUC-Mcc-055471	Macaca mulatta	42.90	4.00e-149	520.00
IUUC-Meu-056190	Macropus eugenii	43.25	1.00e-147	514.00
IUUC-Mor-057135	Magnaporthe oryzae	50.86	0.00e+00	685.00
IUUC-Mpo-057475	Magnaporthe poae	48.95	0.00e+00	669.00
IUUC-Mtr-058689	Medicago truncatula	38.33	5.00e-125	439.00
IUUC-Mla-059149	Melampsora laricipopulina	45.55	3.00e-172	596.00
IUUC-Mga-059645	Meleagris gallopavo	39.48	5.00e-52	195.00
IUUC-Mvi-060485	Microbotryum violaceum	44.79	2.00e-156	545.00
IUUC-Mmr-061674	Microcebus murinus	43.31	1.00e-72	265.00
IUUC-Mdo-062973	Monodelphis domestica	42.94	4.00e-151	526.00
IUUC-Mmu-064180	Mus musculus	43.87	2.00e-151	527.00
IUUC-Mac-064535	Musa acuminata	37.50	2.00e-80	291.00
IUUC-Mpu-066406	Mustela putorius furo	42.14	1.00e-147	514.00
IUUC-Mlu-067795	Myotis lucifugus	44.71	1.00e-72	265.00
IUUC-Nfi-068516	Neosartorya fischeri	50.49	0.00e+00	631.00
IUUC-Ncr-068767	Neurospora crassa	51.90	0.00e+00	669.00
IUUC-Opr-071084	Ochotona princeps	43.80	4.00e-51	193.00
IUUC-Ont-071614	Oreochromis niloticus	43.43	5.00e-157	546.00
IUUC-Oba-075980	Oryza barthii	37.06	2.00e-109	387.00
IUUC-Obr-076799	Oryza brachyantha	41.04	7.00e-136	475.00
IUUC-Ogl-077134	Oryza glaberrima	40.89	3.00e-131	460.00
IUUC-Ogu-078655	Oryza glumaepatula	39.20	8.00e-124	435.00
IUUC-Oin-079654	Oryza indica	40.89	6.00e-131	459.00
IUUC-Olo-080706	Oryza longistaminata	38.74	4.00e-119	420.00
IUUC-Ome-081716	Oryza meridionalis	43.57	2.00e-72	265.00
IUUC-Oni-082508	Oryza nivara	38.13	3.00e-120	423.00
IUUC-Opu-083707	Oryza punctata	38.59	2.00e-118	417.00
IUUC-Oru-084453	Oryza rufipogon	38.74	4.00e-119	420.00
IUUC-Osa-085811	Oryza sativa	40.74	6.00e-131	459.00
IUUC-Ola-087361	Oryzias latipes	43.59	8.00e-157	545.00
IUUC-Oga-088015	Otolemur garnettii	42.75	3.00e-151	526.00
IUUC-Oar-090058	Ovis aries	55.36	1.00e-51	195.00
IUUC-Ptr-090631	Pan troglodytes	37.25	3.00e-58	216.00
IUUC-Pan-092306	Papio anubis	42.84	1.00e-147	514.00
IUUC-Pma-094622	Petromyzon marinus	44.05	1.00e-160	557.00
IUUC-Pno-094794	Phaeosphaeria nodorum	49.56	0.00e+00	673.00
IUUC-Ppa-095528	Physcomitrella patens	38.34	7.00e-80	289.00
IUUC-Pfo-096682	Poecilia formosa	43.16	3.00e-159	553.00
IUUC-Pab-097939	Pongo abelii	42.86	7.00e-135	471.00
IUUC-Pop-099043	Populus trichocarpa	42.47	1.00e-125	441.00
IUUC-Pca-100333	Procavia capensis	42.79	3.00e-146	509.00
IUUC-Ppe-102078	Prunus persica	38.87	1.00e-127	448.00
IUUC-Pgr-103525	Puccinia graminis	45.04	1.00e-156	545.00
IUUC-Ptt-103929	Puccinia triticina	44.78	4.00e-152	530.00
IUUC-Pte-104029	Pyrenophora teres	52.86	0.00e+00	751.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	51.33	0.00e+00	752.00
IUUC-Rno-105248	Rattus norvegicus	46.18	1.00e-85	308.00
IUUC-Sce-106381	Saccharomyces cerevisiae	62.52	0.00e+00	894.00
IUUC-Sha-106519	Sarcophilus harrisii	43.34	8.00e-150	521.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	45.59	1.00e-172	597.00
IUUC-Spo-108071	Schizosaccharomyces pombe	44.78	2.00e-167	580.00
IUUC-Smo-109604	Selaginella moellendorffii	40.83	5.00e-128	449.00
IUUC-Sit-110551	Setaria italica	40.28	3.00e-128	450.00
IUUC-Sly-110970	Solanum lycopersicum	44.54	2.00e-75	274.00
IUUC-Stu-112593	Solanum tuberosum	41.04	1.00e-135	474.00
IUUC-Sar-113123	Sorex araneus	49.58	3.00e-65	239.00
IUUC-Sbi-113945	Sorghum bicolor	40.58	1.00e-131	461.00
IUUC-Sre-115188	Sporisorium reilianum	43.77	1.00e-160	558.00
IUUC-Ssc-115352	Sus scrofa	42.07	2.00e-146	510.00
IUUC-Tru-117685	Takifugu rubripes	43.48	1.00e-158	551.00
IUUC-Tni-119982	Tetraodon nigroviridis	46.76	3.00e-85	307.00
IUUC-Tca-121664	Theobroma cacao	40.87	5.00e-137	479.00
IUUC-Tre-122229	Trichoderma reesei	51.97	0.00e+00	632.00
IUUC-Tvi-122576	Trichoderma virens	51.98	0.00e+00	645.00
IUUC-Tae-124110	Triticum aestivum	40.37	3.00e-120	423.00
IUUC-Tur-126781	Triticum urartu	38.55	7.00e-105	372.00
IUUC-Tme-127080	Tuber melanosporum	59.67	0.00e+00	848.00
IUUC-Ttr-128514	Tursiops truncatus	37.37	2.00e-85	307.00
IUUC-Uma-129556	Ustilago maydis	43.62	2.00e-157	547.00
IUUC-Vda-129715	Verticillium dahliae	52.55	0.00e+00	707.00
IUUC-Vvi-131211	Vitis vinifera	39.66	2.00e-128	451.00
IUUC-Xma-133883	Xiphophorus maculatus	43.31	8.00e-156	541.00
IUUC-Zma-135341	Zea mays	36.29	8.00e-115	405.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence