iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-108848

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitinyl hydrolase 1

Genbank Nucleotide ID

GL377601

Gene Name

SELMODRAFT_108210

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_108210	EFJ20925	EFJ20925

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	5.40e-47	161.3	305	763
UBD/Alpha-Helix/UBA	1.00e-14	54.8	594	634

Active Site

Position(s)	Description	Evidence
314	Nucleophile	{ECO:0000256\|PIRSR:PIRSR016308-1}
741	Proton acceptor	{ECO:0000256\|PIRSR:PIRSR016308-1}

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelw.......kskkkavsprellkalkkeaeefsgyeqqDaq 93
           tGl NlgN+CY+ SvLQ ++++++++  +    k  +  + +p +p+++l ++l kl + l+        + +k + pr++++ +++ ++ef +++qqDa 
   Q: 305  TGLVNLGNSCYLASVLQIIFATRDFQLRYYGnLKLDDAFQLAPADPTQDLNTQLSKLGHGLLsgkyseqPEFQKGIPPRMFKSLIGAGHPEFASSRQQDAF 405
           7************************9766664666777778899*****************86654444455569************************** PP
   S: 94   EflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkke......... 185
           Ef++++l+q+e+                              +  ++  s+ F++ ++++i+c + ++v+ ++   + lsl +p +  t+           
   Q: 406  EFFQYFLEQVERGN--------------------------VAN-PNEDPSRCFKFLVEERIVCCSSGKVKYTKRVDNALSLTLPLDAATNRDevaayekit 479
           ***********988..........................223.3345689*******************9988888888888888877666889****** PP
   S: 186  .................slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfcts.. 267
                             l+ cL+ f++++e+e    +y++  +++++a k+++l ++P +L lh+ +f+ + + ++++k++  +++p+++d+s++  +  
   Q: 480  seggnsgekievvrpriPLSACLDRFAAPDEVE----FYSTAVNARTTALKMTSLATFPTYLLLHMRKFQLDAS-WVPKKLDVFLDVPDTIDISHMRGKgl 575
           ********************************9....9*******************************99887.*******************9999999 PP
   S: 268  ..............................................................................peekqke................ 274
                                                                                         +     e                
   Q: 576  qpgeellpeaddeaegpvadeaivsqlmdmgfprvrcekaaiftsnhgaepamewllshmddpdidvpyshsssnanvD-----Enavqslvalgfsadla 671
           9999999888888888888888888888888888877777777777777777777777777777777766665555550.....05555566666666666 PP
   S: 275  .................................................kkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtev 317
                                                            + kY+L++ v+H+G s+ +GHYva++ + +g+W+ f+D kV  +
   Q: 672  rkalratggrtedaaewifsnsddanameldvggsstpsssvphdlpdgSGKYKLMGFVSHMGsSTLCGHYVAHILK-EGRWVIFNDGKVALS 763
           6666666666666666667777777777888888888888888899999****************************.9**********9765 PP

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraa.nnnleaAveyLldg 41
           +de ++ ql++MGF+r ++ +a   + n  +e A+e+Ll++
   Q: 594  ADEAIVSQLMDMGFPRVRCEKAAIFTsNHGAEPAMEWLLSH 634
           58999**********************************97 PP

Organism

Selaginella moellendorffii

Protein Sequence
(Fasta)

MALSNVGMPQ ASTRIYKEEC CLTFDTPKSD GGLFVDLTSF LAFGREQAMW NFKKTGSSVY 60
LHIKHTLKES DEEDDRPHKK PTLLAIGVEG GFETKEPEYD ETLSIVILPD YQTLPLSSAE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCTCT CCAACGTTGG GATGCCGCAG GCCTCGACGC GGATCTACAA GGAGGAGTGC 60
TGCCTCACGT TCGACACGCC GGTAAGAATC ATCGCCGGCT GCTCGTAGCC TGGATTATAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR015940--UBA
IPR009060--UBA-like
IPR016652--Ubiquitinyl_hydrolase
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50030--UBA
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00627--UBA
PF00443--UCH
PF02148--zf-UBP

SMART

SM00165--UBA
SM00290--ZnF_UBP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

smo:SELMODRAFT_108210

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000394	Aegilops tauschii	56.68	0.00e+00	862.00
IUUC-Aml-002104	Ailuropoda melanoleuca	48.07	0.00e+00	778.00
IUUC-Atr-002580	Amborella trichopoda	58.80	0.00e+00	981.00
IUUC-Apl-003774	Anas platyrhynchos	48.23	0.00e+00	762.00
IUUC-Aca-005368	Anolis carolinensis	49.52	0.00e+00	813.00
IUUC-Aly-005727	Arabidopsis lyrata	62.16	0.00e+00	994.00
IUUC-Ath-006974	Arabidopsis thaliana	61.78	0.00e+00	991.00
IUUC-Ang-009720	Aspergillus niger	35.93	2.00e-121	429.00
IUUC-Ate-010531	Aspergillus terreus	33.71	3.00e-104	372.00
IUUC-Ame-011470	Astyanax mexicanus	41.22	0.00e+00	664.00
IUUC-Bta-013179	Bos taurus	47.94	0.00e+00	777.00
IUUC-Bol-015536	Brassica oleracea	63.41	0.00e+00	1004.00
IUUC-Bra-017939	Brassica rapa	63.07	0.00e+00	1004.00
IUUC-Cja-019063	Callithrix jacchus	47.31	0.00e+00	764.00
IUUC-Cfa-020976	Canis familiaris	49.40	0.00e+00	794.00
IUUC-Cpo-022265	Cavia porcellus	49.58	0.00e+00	798.00
IUUC-Cre-022640	Chlamydomonas reinhardtii	41.68	3.00e-116	411.00
IUUC-Csa-024177	Chlorocebus sabaeus	48.75	0.00e+00	702.00
IUUC-Cho-024702	Choloepus hoffmanni	42.93	1.00e-127	449.00
IUUC-Csv-026347	Ciona savignyi	42.96	0.00e+00	632.00
IUUC-Dre-027982	Danio rerio	45.22	0.00e+00	669.00
IUUC-Dno-029034	Dasypus novemcinctus	47.94	0.00e+00	780.00
IUUC-Dor-030479	Dipodomys ordii	49.04	1.00e-95	343.00
IUUC-Dse-031467	Dothistroma septosporum	37.35	2.00e-127	449.00
IUUC-Dme-032075	Drosophila melanogaster	44.97	0.00e+00	660.00
IUUC-Ete-032865	Echinops telfairi	43.87	0.00e+00	684.00
IUUC-Eca-034059	Equus caballus	48.18	0.00e+00	777.00
IUUC-Eeu-035304	Erinaceus europaeus	46.53	0.00e+00	717.00
IUUC-Fca-035515	Felis catus	48.18	0.00e+00	783.00
IUUC-Fal-037271	Ficedula albicollis	49.18	0.00e+00	749.00
IUUC-Fox-037745	Fusarium oxysporum	37.22	3.00e-125	441.00
IUUC-Gmo-039071	Gadus morhua	45.34	0.00e+00	671.00
IUUC-Gga-040635	Gallus gallus	47.59	0.00e+00	791.00
IUUC-Gac-042528	Gasterosteus aculeatus	44.82	0.00e+00	691.00
IUUC-Gma-043614	Glycine max	59.62	0.00e+00	943.00
IUUC-Ggo-044602	Gorilla gorilla	48.18	0.00e+00	783.00
IUUC-Hsa-045959	Homo sapiens	48.18	0.00e+00	783.00
IUUC-Itr-048712	Ictidomys tridecemlineatus	48.00	0.00e+00	779.00
IUUC-Kpa-049156	Komagataella pastoris	34.38	3.00e-118	418.00
IUUC-Lch-049648	Latimeria chalumnae	48.07	0.00e+00	779.00
IUUC-Lpe-051523	Leersia perrieri	58.35	0.00e+00	919.00
IUUC-Loc-052072	Lepisosteus oculatus	43.10	0.00e+00	680.00
IUUC-Laf-054327	Loxodonta africana	47.71	0.00e+00	776.00
IUUC-Mcc-055443	Macaca mulatta	48.53	0.00e+00	783.00
IUUC-Meu-056298	Macropus eugenii	49.40	8.00e-159	553.00
IUUC-Mor-057106	Magnaporthe oryzae	35.89	1.00e-125	443.00
IUUC-Mtr-058680	Medicago truncatula	61.12	0.00e+00	980.00
IUUC-Mga-059669	Meleagris gallopavo	47.76	0.00e+00	753.00
IUUC-Mvi-060476	Microbotryum violaceum	34.79	1.00e-112	400.00
IUUC-Mmr-060575	Microcebus murinus	47.94	0.00e+00	778.00
IUUC-Mdo-062183	Monodelphis domestica	48.21	0.00e+00	783.00
IUUC-Mmu-063592	Mus musculus	48.18	0.00e+00	783.00
IUUC-Mpu-066082	Mustela putorius furo	49.52	0.00e+00	790.00
IUUC-Mlu-067345	Myotis lucifugus	48.59	0.00e+00	780.00
IUUC-Nle-070173	Nomascus leucogenys	49.40	0.00e+00	795.00
IUUC-Opr-070556	Ochotona princeps	48.30	0.00e+00	787.00
IUUC-Ont-071502	Oreochromis niloticus	46.62	0.00e+00	695.00
IUUC-Oan-072959	Ornithorhynchus anatinus	58.56	3.00e-74	270.00
IUUC-Ocu-074861	Oryctolagus cuniculus	49.58	0.00e+00	800.00
IUUC-Oba-075109	Oryza barthii	59.37	0.00e+00	930.00
IUUC-Obr-076292	Oryza brachyantha	60.25	0.00e+00	917.00
IUUC-Ogl-077065	Oryza glaberrima	60.76	0.00e+00	967.00
IUUC-Ogu-078776	Oryza glumaepatula	59.37	0.00e+00	944.00
IUUC-Oin-080048	Oryza indica	60.51	0.00e+00	960.00
IUUC-Olo-080711	Oryza longistaminata	58.34	0.00e+00	868.00
IUUC-Ome-081506	Oryza meridionalis	59.52	0.00e+00	877.00
IUUC-Oni-082320	Oryza nivara	57.93	0.00e+00	922.00
IUUC-Opu-083801	Oryza punctata	60.00	0.00e+00	912.00
IUUC-Oru-085139	Oryza rufipogon	57.81	0.00e+00	920.00
IUUC-Osa-085713	Oryza sativa	60.89	0.00e+00	971.00
IUUC-Ola-086951	Oryzias latipes	44.41	0.00e+00	674.00
IUUC-Olu-087822	Ostreococcus lucimarinus	41.04	2.00e-167	582.00
IUUC-Oga-088625	Otolemur garnettii	48.06	0.00e+00	771.00
IUUC-Oar-089995	Ovis aries	47.48	0.00e+00	768.00
IUUC-Ptr-090640	Pan troglodytes	47.88	0.00e+00	788.00
IUUC-Pan-091974	Papio anubis	48.24	0.00e+00	775.00
IUUC-Psi-093957	Pelodiscus sinensis	48.53	0.00e+00	810.00
IUUC-Pma-094242	Petromyzon marinus	48.83	5.00e-105	373.00
IUUC-Pno-094835	Phaeosphaeria nodorum	37.89	5.00e-114	404.00
IUUC-Ppa-095901	Physcomitrella patens	66.95	0.00e+00	1093.00
IUUC-Pfo-097148	Poecilia formosa	47.09	0.00e+00	707.00
IUUC-Pab-098068	Pongo abelii	43.66	0.00e+00	656.00
IUUC-Pop-098943	Populus trichocarpa	62.85	0.00e+00	993.00
IUUC-Pca-100738	Procavia capensis	46.77	3.00e-154	538.00
IUUC-Ppe-101315	Prunus persica	60.88	0.00e+00	984.00
IUUC-Pva-102154	Pteropus vampyrus	47.47	0.00e+00	766.00
IUUC-Pte-104306	Pyrenophora teres	35.66	5.00e-107	381.00
IUUC-Rno-105801	Rattus norvegicus	48.30	0.00e+00	784.00
IUUC-Sce-106304	Saccharomyces cerevisiae	31.14	1.00e-72	267.00
IUUC-Sha-107635	Sarcophilus harrisii	48.73	0.00e+00	785.00
IUUC-Sja-107678	Schizosaccharomyces japonicus	33.25	1.00e-96	347.00
IUUC-Sit-110728	Setaria italica	61.80	0.00e+00	996.00
IUUC-Sly-111523	Solanum lycopersicum	60.98	0.00e+00	1014.00
IUUC-Sar-113733	Sorex araneus	47.19	1.00e-98	353.00
IUUC-Sbi-114419	Sorghum bicolor	60.20	0.00e+00	973.00
IUUC-Ssc-115686	Sus scrofa	47.42	0.00e+00	771.00
IUUC-Tgu-117346	Taeniopygia guttata	47.65	0.00e+00	772.00
IUUC-Tru-118350	Takifugu rubripes	44.33	0.00e+00	682.00
IUUC-Tni-120658	Tetraodon nigroviridis	44.10	0.00e+00	665.00
IUUC-Tca-121585	Theobroma cacao	62.30	0.00e+00	977.00
IUUC-Tvi-122303	Trichoderma virens	36.80	5.00e-125	441.00
IUUC-Tae-123798	Triticum aestivum	58.81	0.00e+00	936.00
IUUC-Tme-126909	Tuber melanosporum	38.22	5.00e-120	424.00
IUUC-Tbe-127261	Tupaia belangeri	42.43	1.00e-129	456.00
IUUC-Ttr-129119	Tursiops truncatus	52.16	6.00e-109	387.00
IUUC-Vpa-130170	Vicugna pacos	38.83	7.00e-154	536.00
IUUC-Vvi-131116	Vitis vinifera	61.94	0.00e+00	961.00
IUUC-Xtr-131953	Xenopus tropicalis	47.11	0.00e+00	738.00
IUUC-Xma-133837	Xiphophorus maculatus	46.97	0.00e+00	706.00
IUUC-Zma-135786	Zea mays	59.57	0.00e+00	945.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence