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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105079
Ensembl Protein ID ENSRNOP00000044213.4
UniProt Accession Q6QI75; Q6QI75_RAT
Genbank Protein ID AAS66224.1
Protein Name LRRG00133; Protein Red
Genbank Nucleotide ID AABR07031718
Gene Name Ik; Wdr55
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000017251.6 ENSRNOT00000085470.1 ENSRNOP00000073422.1
ENSRNOG00000017251.6 ENSRNOT00000043271.3 ENSRNOP00000044213.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.60e-21 74.2 614 645
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sdtllvsGsdDgtikvWDlrt 32
           H++++++l + +++ lv+G d g i++WD r+
   Q: 614  HSAPINSLLLvDENVLVTGDDTGGIRLWDQRK 645
           9*******77555****************765 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MPREYNEDED PAARRRKKKS YYAKLRQQEI ERERELAEKY RDRAKERRDG VNKDYEETEL 60
ISTTANYRAV GPTAEADKSA AEKRRQLIQE SKFLGGDMEH THLVKGLDFA LLQKVRAEIA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105079|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGAAGGCAC GGAAGGCAAA GCTCTGTCGC AGGCTTTCGT GGTGCATTGT GGATAAAAGT 60
TTGTCGCCGC TGTTTTGTTG AGGATATTTC GCGATTGCTG GCGCTGAGAG ACCGCGGCCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105079|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR012492--RED_C
IPR012916--RED_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF07807--RED_C
PF07808--RED_N
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
KEGG rno:307494
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000562 Aegilops tauschii 37.11 4.00e-47 182.00
IUUC-Aml-001768 Ailuropoda melanoleuca 91.65 0.00e+00 1402.00
IUUC-Atr-002764 Amborella trichopoda 35.53 9.00e-22 95.90
IUUC-Apl-003880 Anas platyrhynchos 70.86 0.00e+00 1035.00
IUUC-Aca-005060 Anolis carolinensis 79.36 0.00e+00 1190.00
IUUC-Aly-006484 Arabidopsis lyrata 36.82 2.00e-49 189.00
IUUC-Ath-006652 Arabidopsis thaliana 38.98 4.00e-58 218.00
IUUC-Bta-013497 Bos taurus 90.00 0.00e+00 694.00
IUUC-Bdi-014378 Brachypodium distachyon 38.49 9.00e-56 210.00
IUUC-Bol-016352 Brassica oleracea 39.32 2.00e-60 225.00
IUUC-Bra-017103 Brassica rapa 39.32 1.00e-60 226.00
IUUC-Cel-018192 Caenorhabditis elegans 25.38 1.00e-14 74.30
IUUC-Cja-018792 Callithrix jacchus 87.50 0.00e+00 683.00
IUUC-Cfa-020739 Canis familiaris 90.83 0.00e+00 1363.00
IUUC-Cpo-022331 Cavia porcellus 90.89 0.00e+00 708.00
IUUC-Cre-022921 Chlamydomonas reinhardtii 40.43 3.00e-37 147.00
IUUC-Csa-023414 Chlorocebus sabaeus 88.54 0.00e+00 709.00
IUUC-Cho-024600 Choloepus hoffmanni 90.48 0.00e+00 637.00
IUUC-Cin-025565 Ciona intestinalis 38.69 7.00e-63 234.00
IUUC-Csv-026294 Ciona savignyi 37.20 2.00e-61 229.00
IUUC-Cne-026979 Cryptococcus neoformans 32.99 1.00e-39 157.00
IUUC-Cme-027192 Cyanidioschyzon merolae 26.13 1.00e-20 94.00
IUUC-Dre-028492 Danio rerio 62.94 5.00e-131 460.00
IUUC-Dno-030050 Dasypus novemcinctus 89.21 0.00e+00 1303.00
IUUC-Dor-030386 Dipodomys ordii 80.44 1.00e-169 588.00
IUUC-Dme-032012 Drosophila melanogaster 34.31 1.00e-58 221.00
IUUC-Ete-032491 Echinops telfairi 87.47 0.00e+00 682.00
IUUC-Eca-033583 Equus caballus 92.53 0.00e+00 1382.00
IUUC-Eeu-034976 Erinaceus europaeus 93.44 8.00e-176 609.00
IUUC-Fca-036417 Felis catus 88.80 0.00e+00 691.00
IUUC-Gmo-039505 Gadus morhua 66.17 5.00e-142 497.00
IUUC-Ggr-039978 Gaeumannomyces graminis 24.06 5.00e-12 65.50
IUUC-Gga-040732 Gallus gallus 67.13 1.00e-146 512.00
IUUC-Gac-041313 Gasterosteus aculeatus 62.85 1.00e-136 479.00
IUUC-Gma-044122 Glycine max 40.68 2.00e-58 219.00
IUUC-Ggo-044748 Gorilla gorilla 89.06 0.00e+00 713.00
IUUC-Hsa-046943 Homo sapiens 89.06 0.00e+00 712.00
IUUC-Hvu-047659 Hordeum vulgare 36.84 7.00e-54 204.00
IUUC-Itr-048110 Ictidomys tridecemlineatus 92.01 0.00e+00 685.00
IUUC-Lch-050331 Latimeria chalumnae 58.73 2.00e-115 408.00
IUUC-Lpe-051193 Leersia perrieri 39.44 6.00e-59 221.00
IUUC-Loc-051946 Lepisosteus oculatus 70.32 0.00e+00 922.00
IUUC-Laf-054035 Loxodonta africana 88.95 0.00e+00 674.00
IUUC-Mcc-055285 Macaca mulatta 87.63 1.00e-94 338.00
IUUC-Meu-056596 Macropus eugenii 85.09 7.00e-176 609.00
IUUC-Mor-056995 Magnaporthe oryzae 24.46 2.00e-13 70.10
IUUC-Mtr-058587 Medicago truncatula 39.06 2.00e-58 219.00
IUUC-Mga-059839 Meleagris gallopavo 72.70 0.00e+00 999.00
IUUC-Mdo-062868 Monodelphis domestica 81.05 0.00e+00 1251.00
IUUC-Mmu-064305 Mus musculus 96.81 0.00e+00 742.00
IUUC-Mac-065041 Musa acuminata 38.38 6.00e-57 214.00
IUUC-Mpu-066779 Mustela putorius furo 90.10 0.00e+00 683.00
IUUC-Mlu-067223 Myotis lucifugus 91.36 0.00e+00 1349.00
IUUC-Ncr-068919 Neurospora crassa 25.95 9.00e-09 54.70
IUUC-Nle-069852 Nomascus leucogenys 89.32 0.00e+00 689.00
IUUC-Ont-072452 Oreochromis niloticus 66.86 1.00e-141 496.00
IUUC-Oan-073163 Ornithorhynchus anatinus 82.76 2.00e-67 247.00
IUUC-Ocu-074628 Oryctolagus cuniculus 92.29 0.00e+00 705.00
IUUC-Oba-075868 Oryza barthii 38.73 2.00e-56 213.00
IUUC-Obr-076768 Oryza brachyantha 39.08 8.00e-58 217.00
IUUC-Ogl-077424 Oryza glaberrima 39.44 4.00e-59 221.00
IUUC-Ogu-078847 Oryza glumaepatula 39.08 5.00e-57 214.00
IUUC-Oin-079495 Oryza indica 39.44 4.00e-59 221.00
IUUC-Olo-080268 Oryza longistaminata 39.08 6.00e-57 214.00
IUUC-Ome-081709 Oryza meridionalis 38.85 2.00e-50 192.00
IUUC-Oni-082749 Oryza nivara 39.44 4.00e-59 221.00
IUUC-Opu-084023 Oryza punctata 32.75 9.00e-40 157.00
IUUC-Oru-084764 Oryza rufipogon 39.08 5.00e-57 214.00
IUUC-Osa-086009 Oryza sativa 39.44 6.00e-59 221.00
IUUC-Ola-086463 Oryzias latipes 60.96 5.00e-132 463.00
IUUC-Olu-087897 Ostreococcus lucimarinus 31.23 2.00e-43 169.00
IUUC-Oga-089114 Otolemur garnettii 88.95 0.00e+00 691.00
IUUC-Ptr-090556 Pan troglodytes 89.32 0.00e+00 715.00
IUUC-Pan-092828 Papio anubis 88.54 0.00e+00 709.00
IUUC-Psi-093609 Pelodiscus sinensis 76.10 0.00e+00 1049.00
IUUC-Pma-094413 Petromyzon marinus 54.29 4.00e-103 367.00
IUUC-Ppa-095422 Physcomitrella patens 41.47 5.00e-67 248.00
IUUC-Pfo-096389 Poecilia formosa 65.68 3.00e-134 471.00
IUUC-Pab-098095 Pongo abelii 89.32 0.00e+00 711.00
IUUC-Pop-099612 Populus trichocarpa 38.52 2.00e-54 206.00
IUUC-Pca-100408 Procavia capensis 89.23 0.00e+00 679.00
IUUC-Ppe-101931 Prunus persica 38.64 5.00e-54 204.00
IUUC-Pva-102549 Pteropus vampyrus 90.36 0.00e+00 689.00
IUUC-Sha-107299 Sarcophilus harrisii 87.75 0.00e+00 1252.00
IUUC-Sja-107829 Schizosaccharomyces japonicus 29.45 5.00e-22 98.60
IUUC-Spo-108122 Schizosaccharomyces pombe 29.82 1.00e-27 116.00
IUUC-Smo-109613 Selaginella moellendorffii 40.21 3.00e-52 198.00
IUUC-Sit-110263 Setaria italica 38.03 4.00e-56 211.00
IUUC-Sly-110988 Solanum lycopersicum 37.46 7.00e-53 201.00
IUUC-Stu-112713 Solanum tuberosum 37.81 6.00e-54 204.00
IUUC-Sbi-114617 Sorghum bicolor 37.32 6.00e-54 204.00
IUUC-Sre-115136 Sporisorium reilianum 30.68 1.00e-12 67.80
IUUC-Ssc-116268 Sus scrofa 90.75 0.00e+00 1375.00
IUUC-Tgu-116720 Taeniopygia guttata 78.10 0.00e+00 976.00
IUUC-Tru-117977 Takifugu rubripes 66.67 2.00e-133 468.00
IUUC-Tsy-119121 Tarsius syrichta 87.78 4.00e-114 404.00
IUUC-Tni-119904 Tetraodon nigroviridis 69.05 3.00e-136 478.00
IUUC-Tca-121718 Theobroma cacao 40.28 6.00e-59 221.00
IUUC-Tae-124219 Triticum aestivum 37.54 2.00e-54 206.00
IUUC-Tme-126922 Tuber melanosporum 22.71 5.00e-14 72.80
IUUC-Tbe-127276 Tupaia belangeri 92.59 2.00e-159 554.00
IUUC-Uma-129505 Ustilago maydis 31.71 3.00e-13 69.70
IUUC-Vpa-130276 Vicugna pacos 91.63 2.00e-135 474.00
IUUC-Vvi-131377 Vitis vinifera 39.58 2.00e-57 218.00
IUUC-Xtr-132529 Xenopus tropicalis 75.09 0.00e+00 1174.00
IUUC-Xma-134177 Xiphophorus maculatus 65.38 1.00e-126 446.00
IUUC-Yli-134665 Yarrowia lipolytica 25.10 5.00e-07 48.50
Created Date 25-Jun-2017

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