iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/ATG8	8.10e-47	158.6	14	117

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/ATG8

   S: 1    krkeevekirdkfpdkiPvivekakkekipeldkkkylvPsdltvgqlvkiirkrlqlraedalfllvnnslvsvsatlaeiyeeekdedgflyvaya 98
           krk+e+ +ir+k+ d++Pvivek +k++ip++dkkkylvP+dltvgq+v++irkr+ql ae+a+f++v+n+l+++ a+++ iy+e+k+edgflyv+y+
   Q: 14   KRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYS 111
           699*********************************************************************************************** PP
   S: 99   seetfG 104
           +e+tfG
   Q: 112  GENTFG 117
           *****9 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton.

Protein Sequence
(Fasta)

MSNVSFRQDH DFEKRKAEAL RIREKYSDRV PVIVEKSEKS DIPNIDKKKY LVPADLTVGQ 60
FVYVIRKRIQ LSAEKAIFIF VDNVLPPTGA MMSTIYDENK EEDGFLYVTY SGENTFGSSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTCACTAAT TCGATAATCT TTCGGTAAAC AAAAAAGGAA AAGGTTACAC GAATTGTATA 60
TATACACATA TAACTGTGAC GATCGCAGTC GAAGATTAAT TGAATCACAC AAAGTCGAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0493--Microtubule
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0833--Ubl conjugation pathway
KW-0926--Vacuole

Interpro

IPR004241--Atg8-like
IPR029071--Ubiquitin-rel_dom

Pfam

PF02991--Atg8

Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0031410--C:cytoplasmic vesicle
GO:0005874--C:microtubule
GO:0006914--P:autophagy
GO:0015031--P:protein transport

KEGG

ath:AT3G60640

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003994	Anas platyrhynchos	58.41	8.00e-38	147.00
IUUC-Cho-025008	Choloepus hoffmanni	53.98	8.00e-35	137.00
IUUC-Dre-028351	Danio rerio	59.82	5.00e-38	149.00
IUUC-Ete-032671	Echinops telfairi	59.82	5.00e-38	148.00
IUUC-Gga-040919	Gallus gallus	58.41	8.00e-38	147.00
IUUC-Itr-048838	Ictidomys tridecemlineatus	58.26	2.00e-38	149.00
IUUC-Loc-052290	Lepisosteus oculatus	58.12	1.00e-38	150.00
IUUC-Laf-054203	Loxodonta africana	59.82	6.00e-38	148.00
IUUC-Mcc-055307	Macaca mulatta	59.82	6.00e-38	148.00
IUUC-Mga-060108	Meleagris gallopavo	56.90	6.00e-38	148.00
IUUC-Mmr-061776	Microcebus murinus	59.82	6.00e-38	148.00
IUUC-Oar-089989	Ovis aries	59.82	6.00e-38	148.00
IUUC-Psi-093055	Pelodiscus sinensis	58.41	8.00e-38	147.00
IUUC-Pca-100230	Procavia capensis	59.82	6.00e-38	148.00
IUUC-Pva-103103	Pteropus vampyrus	58.41	8.00e-38	147.00
IUUC-Sha-106656	Sarcophilus harrisii	59.82	6.00e-38	148.00
IUUC-Sja-107857	Schizosaccharomyces japonicus	78.45	4.00e-51	192.00
IUUC-Sar-113670	Sorex araneus	54.46	1.00e-33	133.00
IUUC-Tru-118632	Takifugu rubripes	60.53	5.00e-39	152.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence