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Tag Content
UUCD2 ID IUUC-Cin-025782
UUCD1 version UUC-CiI-00379
Ensembl Protein ID ENSCINP00000012564.3
UniProt Accession F6YXI8; F6YXI8_CIOIN
Genbank Protein ID ENSCINP00000012564
Protein Name Ribosome biogenesis protein BOP1 homolog
Genbank Nucleotide ID EAAA01002273
Gene Name LOC100177341
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCING00000006069.3 ENSCINT00000012564.3 ENSCINP00000012564.3
ENSCING00000006069.3 ENSCINT00000012588.3 ENSCINP00000012588.3
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.60e-14 50.8 417 455
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++ v+ ++  ++   l+sGsdDg++++W++ t ++++
   Q: 417  GHQAMVRTISVdTTgQWLASGSDDGVVRIWEVQTARCVR 455
           67777888888755588*******************987 PP
   
Organism Ciona intestinalis
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
NLRLLHKTTS MKKKRPLSEL QTSILGENEE NLFTNKPIEE EESENEEENE ENAHSVAEES 60
ESDYSGLGED EDSDSDDSML GEEDSDVEEG EEVNEKSTEP TQHTEEKKET SEVVAKINEK 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cin-025782|E3,WD_repeat|Ciona intestinalis
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATTTACCAGA TTAATCTACG TTTGTTACAT AAAACTACAA GTATGAAGAA AAAGAGACCA 60
CTGAGTGAAT TACAGACCTC TATACTGGGA GAGAATGAGG TAAAACTTAA GTTTTTTTGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cin-025782|E3,WD_repeat|Ciona intestinalis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08145--BOP1NT
PF00400--WD40
SMART

SM01035--BOP1NT
SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001158 Aegilops tauschii 42.00 2.00e-124 438.00
IUUC-Aml-001507 Ailuropoda melanoleuca 50.85 0.00e+00 697.00
IUUC-Atr-003141 Amborella trichopoda 38.38 4.00e-81 293.00
IUUC-Apl-003545 Anas platyrhynchos 52.30 0.00e+00 645.00
IUUC-Aly-005649 Arabidopsis lyrata 43.54 6.00e-150 523.00
IUUC-Ath-007625 Arabidopsis thaliana 43.78 8.00e-148 516.00
IUUC-Ago-007958 Ashbya gossypii 42.18 5.00e-161 560.00
IUUC-Acl-008344 Aspergillus clavatus 41.58 9.00e-146 509.00
IUUC-Afl-008616 Aspergillus flavus 40.03 2.00e-149 521.00
IUUC-Afu-009083 Aspergillus fumigatus 42.62 1.00e-143 502.00
IUUC-Ani-009365 Aspergillus nidulans 42.09 1.00e-148 518.00
IUUC-Ang-009796 Aspergillus niger 41.19 9.00e-145 506.00
IUUC-Aor-010015 Aspergillus oryzae 40.03 2.00e-149 521.00
IUUC-Ate-010537 Aspergillus terreus 41.55 2.00e-150 525.00
IUUC-Ame-011767 Astyanax mexicanus 59.51 1.00e-102 364.00
IUUC-Bgr-012286 Blumeria graminis 42.79 2.00e-150 524.00
IUUC-Bta-013569 Bos taurus 55.30 0.00e+00 744.00
IUUC-Bci-013820 Botrytis cinerea 42.51 4.00e-145 507.00
IUUC-Bdi-014477 Brachypodium distachyon 45.09 6.00e-156 542.00
IUUC-Bol-016099 Brassica oleracea 42.94 4.00e-148 517.00
IUUC-Bra-017174 Brassica rapa 43.25 6.00e-149 520.00
IUUC-Cel-018201 Caenorhabditis elegans 41.95 2.00e-141 494.00
IUUC-Cja-019009 Callithrix jacchus 50.69 0.00e+00 650.00
IUUC-Cfa-020173 Canis familiaris 51.05 0.00e+00 682.00
IUUC-Cpo-021796 Cavia porcellus 54.22 0.00e+00 721.00
IUUC-Cre-022650 Chlamydomonas reinhardtii 44.29 1.00e-84 305.00
IUUC-Csa-023440 Chlorocebus sabaeus 54.99 0.00e+00 750.00
IUUC-Csv-026352 Ciona savignyi 72.53 0.00e+00 1012.00
IUUC-Cgl-026393 Colletotrichum gloeosporioides 38.14 6.00e-117 413.00
IUUC-Cne-027004 Cryptococcus neoformans 43.77 2.00e-165 574.00
IUUC-Cme-027242 Cyanidioschyzon merolae 35.08 4.00e-111 394.00
IUUC-Dre-028658 Danio rerio 58.72 0.00e+00 817.00
IUUC-Dno-028883 Dasypus novemcinctus 54.92 0.00e+00 743.00
IUUC-Dor-031031 Dipodomys ordii 55.08 0.00e+00 760.00
IUUC-Dse-031443 Dothistroma septosporum 40.65 4.00e-149 520.00
IUUC-Dme-031786 Drosophila melanogaster 46.92 0.00e+00 681.00
IUUC-Eca-033677 Equus caballus 55.30 0.00e+00 739.00
IUUC-Eeu-035310 Erinaceus europaeus 51.51 2.00e-168 584.00
IUUC-Fca-035888 Felis catus 54.38 0.00e+00 739.00
IUUC-Fal-037438 Ficedula albicollis 49.58 6.00e-160 555.00
IUUC-Fox-037973 Fusarium oxysporum 42.13 1.00e-155 541.00
IUUC-Fso-038187 Fusarium solani 41.74 3.00e-155 541.00
IUUC-Gmo-039114 Gadus morhua 52.75 0.00e+00 691.00
IUUC-Ggr-039746 Gaeumannomyces graminis 41.87 4.00e-155 540.00
IUUC-Gga-040631 Gallus gallus 53.76 7.00e-119 418.00
IUUC-Gac-042582 Gasterosteus aculeatus 57.36 0.00e+00 754.00
IUUC-Gma-044215 Glycine max 42.86 2.00e-144 504.00
IUUC-Ggo-045587 Gorilla gorilla 55.05 0.00e+00 752.00
IUUC-Hsa-046319 Homo sapiens 55.15 0.00e+00 752.00
IUUC-Hvu-047526 Hordeum vulgare 44.63 5.00e-147 513.00
IUUC-Itr-048683 Ictidomys tridecemlineatus 54.69 0.00e+00 738.00
IUUC-Kpa-049221 Komagataella pastoris 43.92 1.00e-85 309.00
IUUC-Lch-049640 Latimeria chalumnae 58.72 0.00e+00 831.00
IUUC-Lpe-051135 Leersia perrieri 46.02 2.00e-81 295.00
IUUC-Loc-051930 Lepisosteus oculatus 59.88 0.00e+00 825.00
IUUC-Lma-053290 Leptosphaeria maculans 43.42 3.00e-147 514.00
IUUC-Laf-053903 Loxodonta africana 50.23 0.00e+00 640.00
IUUC-Mcc-055471 Macaca mulatta 54.84 0.00e+00 746.00
IUUC-Meu-056190 Macropus eugenii 53.91 0.00e+00 721.00
IUUC-Mor-057135 Magnaporthe oryzae 42.92 2.00e-149 521.00
IUUC-Mpo-057475 Magnaporthe poae 40.36 7.00e-145 506.00
IUUC-Mtr-058689 Medicago truncatula 39.33 2.00e-132 464.00
IUUC-Mla-059149 Melampsora laricipopulina 44.58 9.00e-163 565.00
IUUC-Mga-059645 Meleagris gallopavo 48.92 3.00e-72 263.00
IUUC-Mvi-060485 Microbotryum violaceum 40.58 3.00e-143 502.00
IUUC-Mmr-061674 Microcebus murinus 55.20 0.00e+00 728.00
IUUC-Mdo-062973 Monodelphis domestica 54.22 0.00e+00 743.00
IUUC-Mmu-064180 Mus musculus 52.40 0.00e+00 753.00
IUUC-Mac-064535 Musa acuminata 38.55 5.00e-96 344.00
IUUC-Mpu-066406 Mustela putorius furo 55.91 0.00e+00 752.00
IUUC-Mlu-067795 Myotis lucifugus 55.91 0.00e+00 718.00
IUUC-Nfi-068516 Neosartorya fischeri 40.69 6.00e-136 476.00
IUUC-Ncr-068767 Neurospora crassa 43.14 6.00e-142 496.00
IUUC-Opr-071084 Ochotona princeps 49.20 4.00e-83 300.00
IUUC-Ont-071614 Oreochromis niloticus 57.98 0.00e+00 796.00
IUUC-Oba-075980 Oryza barthii 45.43 4.00e-80 291.00
IUUC-Obr-076799 Oryza brachyantha 45.62 2.00e-152 531.00
IUUC-Ogl-077134 Oryza glaberrima 45.01 4.00e-147 513.00
IUUC-Ogu-078655 Oryza glumaepatula 43.01 7.00e-141 493.00
IUUC-Oin-079654 Oryza indica 44.70 9.00e-147 512.00
IUUC-Olo-080706 Oryza longistaminata 45.43 8.00e-81 293.00
IUUC-Ome-081716 Oryza meridionalis 45.43 1.00e-80 292.00
IUUC-Oni-082508 Oryza nivara 41.95 7.00e-136 476.00
IUUC-Opu-083707 Oryza punctata 45.43 9.00e-81 293.00
IUUC-Oru-084453 Oryza rufipogon 45.43 8.00e-81 293.00
IUUC-Osa-085811 Oryza sativa 45.01 4.00e-147 513.00
IUUC-Ola-087361 Oryzias latipes 58.63 0.00e+00 821.00
IUUC-Oga-088015 Otolemur garnettii 54.53 0.00e+00 754.00
IUUC-Oar-090058 Ovis aries 61.85 4.00e-64 237.00
IUUC-Ptr-090631 Pan troglodytes 52.92 1.00e-91 328.00
IUUC-Pan-092306 Papio anubis 54.99 0.00e+00 751.00
IUUC-Pma-094622 Petromyzon marinus 57.95 0.00e+00 808.00
IUUC-Pno-094794 Phaeosphaeria nodorum 39.70 3.00e-138 484.00
IUUC-Ppa-095528 Physcomitrella patens 40.13 9.00e-94 336.00
IUUC-Pfo-096682 Poecilia formosa 58.41 0.00e+00 818.00
IUUC-Pab-097939 Pongo abelii 53.67 0.00e+00 655.00
IUUC-Pop-099043 Populus trichocarpa 43.18 2.00e-136 477.00
IUUC-Pca-100333 Procavia capensis 53.46 0.00e+00 733.00
IUUC-Ppe-102078 Prunus persica 42.63 1.00e-144 505.00
IUUC-Pgr-103525 Puccinia graminis 43.17 7.00e-152 530.00
IUUC-Ptt-103929 Puccinia triticina 42.60 7.00e-147 513.00
IUUC-Pte-104029 Pyrenophora teres 43.57 8.00e-159 552.00
IUUC-Pyt-104446 Pyrenophora triticirepentis 43.42 2.00e-158 551.00
IUUC-Rno-105248 Rattus norvegicus 55.45 0.00e+00 748.00
IUUC-Sce-106381 Saccharomyces cerevisiae 43.11 3.00e-156 544.00
IUUC-Sha-106519 Sarcophilus harrisii 54.57 0.00e+00 743.00
IUUC-Sja-107908 Schizosaccharomyces japonicus 41.06 1.00e-141 495.00
IUUC-Spo-108071 Schizosaccharomyces pombe 39.01 6.00e-133 466.00
IUUC-Smo-109604 Selaginella moellendorffii 46.06 4.00e-153 533.00
IUUC-Sit-109742 Setaria italica 45.16 1.00e-156 545.00
IUUC-Sly-110970 Solanum lycopersicum 47.14 6.00e-84 303.00
IUUC-Stu-112593 Solanum tuberosum 44.31 1.00e-151 528.00
IUUC-Sar-113123 Sorex araneus 49.00 3.00e-90 323.00
IUUC-Sbi-113945 Sorghum bicolor 44.70 6.00e-153 533.00
IUUC-Sre-115188 Sporisorium reilianum 41.18 8.00e-150 523.00
IUUC-Ssc-115352 Sus scrofa 55.20 0.00e+00 749.00
IUUC-Tru-117685 Takifugu rubripes 58.70 0.00e+00 814.00
IUUC-Tni-119982 Tetraodon nigroviridis 57.82 0.00e+00 774.00
IUUC-Tca-121664 Theobroma cacao 43.69 1.00e-153 535.00
IUUC-Tre-122229 Trichoderma reesei 42.79 4.00e-142 496.00
IUUC-Tvi-122576 Trichoderma virens 42.66 1.00e-144 505.00
IUUC-Tae-124110 Triticum aestivum 44.09 9.00e-139 486.00
IUUC-Tur-126781 Triticum urartu 42.00 1.00e-119 422.00
IUUC-Tme-127080 Tuber melanosporum 45.30 4.00e-170 590.00
IUUC-Ttr-128514 Tursiops truncatus 52.04 4.00e-143 500.00
IUUC-Uma-129556 Ustilago maydis 41.20 4.00e-146 510.00
IUUC-Vda-129715 Verticillium dahliae 40.37 2.00e-148 518.00
IUUC-Vvi-131211 Vitis vinifera 39.52 1.00e-136 478.00
IUUC-Xma-133883 Xiphophorus maculatus 57.70 0.00e+00 785.00
IUUC-Yli-134438 Yarrowia lipolytica 41.99 5.00e-145 506.00
IUUC-Zma-135341 Zea mays 41.67 7.00e-88 317.00
Created Date 25-Jun-2017

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