iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ggr-039746

Ensembl Protein ID

GGTG_06035T0

UniProt Accession

J3NXM9; J3NXM9_GAGT3

Genbank Protein ID

EJT76111.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

ADBI01000528

Gene Name

ERB1; GGTG_06035

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GGTG_06035	GGTG_06035T0	GGTG_06035T0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-11	42.6	413	443

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH ++v++ a  ++   l++G+dDgti++W 
   Q: 413  GHDGRVRSAAVdPTgLWLATGGDDGTIRIWM 443
           8**********977677*************5 PP

Organism

Gaeumannomyces graminis

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MGPQLASRKR KLPSKAVEES DDEIIDGLLD GALSQSEDDD EADESEPGEG EGEDDEEDAT 60
SDLEEEDSFK RALKGAEALE DGATNGAGDE DDDDRPNYRI VEDANGGVRY VYDEIDPVYD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGGCAGAA AAAAAAAAGA TCAAAAAAAA AAGGCTACTG GCGTCGCATC CAGAAAATCC 60
GGCGCCAATT GTTGTGCAGT TTCGACGGTC ACCAACAACC TCTCGTCCAC ATCCCACAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	39.19	4.00e-115	407.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.72	4.00e-131	460.00
IUUC-Atr-003141	Amborella trichopoda	37.58	1.00e-76	278.00
IUUC-Apl-003545	Anas platyrhynchos	39.12	9.00e-120	422.00
IUUC-Aly-005649	Arabidopsis lyrata	40.94	5.00e-137	480.00
IUUC-Ath-007625	Arabidopsis thaliana	41.03	6.00e-130	456.00
IUUC-Ago-007958	Ashbya gossypii	52.07	0.00e+00	727.00
IUUC-Acl-008344	Aspergillus clavatus	63.97	0.00e+00	855.00
IUUC-Afl-008616	Aspergillus flavus	59.47	0.00e+00	880.00
IUUC-Afu-009083	Aspergillus fumigatus	59.25	0.00e+00	835.00
IUUC-Ani-009365	Aspergillus nidulans	64.26	0.00e+00	870.00
IUUC-Ang-009796	Aspergillus niger	63.40	0.00e+00	855.00
IUUC-Aor-010015	Aspergillus oryzae	59.47	0.00e+00	881.00
IUUC-Ate-010537	Aspergillus terreus	61.74	0.00e+00	878.00
IUUC-Ame-011767	Astyanax mexicanus	45.10	9.00e-66	241.00
IUUC-Bgr-012286	Blumeria graminis	65.45	0.00e+00	1013.00
IUUC-Bta-013569	Bos taurus	42.36	8.00e-144	502.00
IUUC-Bci-013820	Botrytis cinerea	66.36	0.00e+00	971.00
IUUC-Bdi-014477	Brachypodium distachyon	42.66	8.00e-145	505.00
IUUC-Bol-016099	Brassica oleracea	41.19	3.00e-137	480.00
IUUC-Bra-017174	Brassica rapa	41.03	5.00e-137	481.00
IUUC-Cel-018201	Caenorhabditis elegans	38.33	1.00e-112	398.00
IUUC-Cja-019009	Callithrix jacchus	42.33	4.00e-89	320.00
IUUC-Cfa-020173	Canis familiaris	37.98	9.00e-128	449.00
IUUC-Cpo-021796	Cavia porcellus	42.48	1.00e-143	501.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	43.01	2.00e-129	454.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.63	2.00e-150	524.00
IUUC-Cin-025782	Ciona intestinalis	41.81	7.00e-152	529.00
IUUC-Csv-026352	Ciona savignyi	42.08	1.00e-152	531.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	62.58	0.00e+00	816.00
IUUC-Cne-027004	Cryptococcus neoformans	46.72	1.00e-179	622.00
IUUC-Cme-027242	Cyanidioschyzon merolae	36.63	9.00e-112	395.00
IUUC-Dre-028658	Danio rerio	41.98	5.00e-154	536.00
IUUC-Dno-028883	Dasypus novemcinctus	42.66	7.00e-146	509.00
IUUC-Dor-031031	Dipodomys ordii	42.00	1.00e-148	518.00
IUUC-Dse-031443	Dothistroma septosporum	59.22	0.00e+00	806.00
IUUC-Dme-031786	Drosophila melanogaster	42.16	2.00e-152	531.00
IUUC-Eca-033677	Equus caballus	43.31	3.00e-145	507.00
IUUC-Eeu-035310	Erinaceus europaeus	39.05	4.00e-111	393.00
IUUC-Fca-035888	Felis catus	41.19	8.00e-146	509.00
IUUC-Fal-037438	Ficedula albicollis	42.06	7.00e-122	429.00
IUUC-Fox-037973	Fusarium oxysporum	74.22	0.00e+00	1035.00
IUUC-Fso-038187	Fusarium solani	71.43	0.00e+00	1062.00
IUUC-Gmo-039114	Gadus morhua	41.05	4.00e-141	493.00
IUUC-Gga-040631	Gallus gallus	40.51	1.00e-78	285.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.08	8.00e-147	512.00
IUUC-Gma-044307	Glycine max	40.58	6.00e-142	496.00
IUUC-Ggo-045587	Gorilla gorilla	42.03	1.00e-149	521.00
IUUC-Hsa-046319	Homo sapiens	42.36	2.00e-149	521.00
IUUC-Hvu-047526	Hordeum vulgare	41.22	4.00e-135	473.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	42.66	4.00e-146	510.00
IUUC-Kpa-049221	Komagataella pastoris	48.97	0.00e+00	682.00
IUUC-Lch-049640	Latimeria chalumnae	42.19	5.00e-161	560.00
IUUC-Lpe-051135	Leersia perrieri	39.75	4.00e-123	433.00
IUUC-Loc-051930	Lepisosteus oculatus	42.36	4.00e-158	550.00
IUUC-Lma-053290	Leptosphaeria maculans	66.33	0.00e+00	920.00
IUUC-Laf-053903	Loxodonta africana	38.97	4.00e-123	434.00
IUUC-Mcc-055471	Macaca mulatta	42.48	2.00e-150	525.00
IUUC-Meu-056190	Macropus eugenii	42.48	4.00e-149	520.00
IUUC-Mor-057135	Magnaporthe oryzae	79.77	0.00e+00	1204.00
IUUC-Mpo-057475	Magnaporthe poae	93.32	0.00e+00	1321.00
IUUC-Mtr-058689	Medicago truncatula	38.42	4.00e-126	444.00
IUUC-Mla-059149	Melampsora laricipopulina	47.90	2.00e-180	624.00
IUUC-Mga-059645	Meleagris gallopavo	35.41	3.00e-44	170.00
IUUC-Mvi-060485	Microbotryum violaceum	46.75	3.00e-157	548.00
IUUC-Mmr-061674	Microcebus murinus	42.36	6.00e-143	499.00
IUUC-Mdo-062973	Monodelphis domestica	42.05	3.00e-153	533.00
IUUC-Mmu-064180	Mus musculus	42.48	1.00e-148	518.00
IUUC-Mac-064535	Musa acuminata	36.88	2.00e-85	308.00
IUUC-Mpu-066406	Mustela putorius furo	42.63	2.00e-148	518.00
IUUC-Mlu-067795	Myotis lucifugus	42.20	2.00e-137	481.00
IUUC-Nfi-068516	Neosartorya fischeri	61.82	0.00e+00	802.00
IUUC-Ncr-068767	Neurospora crassa	74.26	0.00e+00	974.00
IUUC-Opr-071084	Ochotona princeps	46.44	2.00e-58	218.00
IUUC-Ont-071614	Oreochromis niloticus	44.34	1.00e-160	558.00
IUUC-Oba-075980	Oryza barthii	39.22	1.00e-121	429.00
IUUC-Obr-076799	Oryza brachyantha	41.94	3.00e-139	487.00
IUUC-Ogl-077134	Oryza glaberrima	41.88	4.00e-134	470.00
IUUC-Ogu-078655	Oryza glumaepatula	40.16	3.00e-126	444.00
IUUC-Oin-079654	Oryza indica	41.88	7.00e-134	469.00
IUUC-Olo-080706	Oryza longistaminata	39.69	2.00e-123	434.00
IUUC-Ome-081716	Oryza meridionalis	35.56	4.00e-72	264.00
IUUC-Oni-082508	Oryza nivara	39.53	9.00e-121	426.00
IUUC-Opu-083707	Oryza punctata	39.53	6.00e-122	429.00
IUUC-Oru-084453	Oryza rufipogon	39.69	2.00e-123	434.00
IUUC-Osa-085811	Oryza sativa	41.72	1.00e-133	468.00
IUUC-Ola-087361	Oryzias latipes	43.67	4.00e-159	553.00
IUUC-Oga-088015	Otolemur garnettii	42.01	9.00e-151	525.00
IUUC-Oar-090058	Ovis aries	50.90	1.00e-47	182.00
IUUC-Ptr-090631	Pan troglodytes	39.49	7.00e-62	229.00
IUUC-Pan-092306	Papio anubis	42.63	4.00e-149	520.00
IUUC-Pma-094622	Petromyzon marinus	43.15	6.00e-157	545.00
IUUC-Pno-094794	Phaeosphaeria nodorum	62.18	0.00e+00	864.00
IUUC-Ppa-095528	Physcomitrella patens	38.23	2.00e-83	301.00
IUUC-Pfo-096682	Poecilia formosa	43.43	4.00e-165	573.00
IUUC-Pab-097939	Pongo abelii	42.69	1.00e-134	471.00
IUUC-Pop-099043	Populus trichocarpa	42.08	1.00e-128	452.00
IUUC-Pca-100333	Procavia capensis	41.57	1.00e-142	499.00
IUUC-Ppe-102078	Prunus persica	41.25	2.00e-132	464.00
IUUC-Pgr-103525	Puccinia graminis	46.57	7.00e-165	572.00
IUUC-Ptt-103929	Puccinia triticina	46.27	3.00e-158	550.00
IUUC-Pte-104029	Pyrenophora teres	66.97	0.00e+00	956.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	66.33	0.00e+00	961.00
IUUC-Rno-105248	Rattus norvegicus	43.62	2.00e-149	521.00
IUUC-Sce-106381	Saccharomyces cerevisiae	50.29	0.00e+00	718.00
IUUC-Sha-106519	Sarcophilus harrisii	42.97	1.00e-156	545.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	48.21	3.00e-167	580.00
IUUC-Spo-108071	Schizosaccharomyces pombe	46.47	3.00e-159	553.00
IUUC-Smo-109604	Selaginella moellendorffii	41.12	9.00e-121	426.00
IUUC-Sit-109742	Setaria italica	42.23	2.00e-142	497.00
IUUC-Sly-110970	Solanum lycopersicum	42.90	6.00e-73	266.00
IUUC-Stu-112593	Solanum tuberosum	40.91	5.00e-137	479.00
IUUC-Sar-113123	Sorex araneus	49.15	1.00e-59	221.00
IUUC-Sbi-113945	Sorghum bicolor	41.76	2.00e-138	484.00
IUUC-Sre-115188	Sporisorium reilianum	44.03	7.00e-162	563.00
IUUC-Ssc-115352	Sus scrofa	42.36	1.00e-147	514.00
IUUC-Tru-117685	Takifugu rubripes	44.57	4.00e-164	570.00
IUUC-Tni-119982	Tetraodon nigroviridis	43.62	7.00e-155	539.00
IUUC-Tca-121664	Theobroma cacao	40.03	2.00e-138	484.00
IUUC-Tre-122229	Trichoderma reesei	71.64	0.00e+00	903.00
IUUC-Tvi-122576	Trichoderma virens	72.32	0.00e+00	918.00
IUUC-Tae-124110	Triticum aestivum	41.44	3.00e-129	454.00
IUUC-Tur-126781	Triticum urartu	38.86	2.00e-110	391.00
IUUC-Tme-127080	Tuber melanosporum	63.55	0.00e+00	868.00
IUUC-Ttr-128514	Tursiops truncatus	39.34	2.00e-90	325.00
IUUC-Uma-129556	Ustilago maydis	43.93	3.00e-158	551.00
IUUC-Vda-129715	Verticillium dahliae	74.56	0.00e+00	1033.00
IUUC-Vvi-131211	Vitis vinifera	39.97	8.00e-125	439.00
IUUC-Xma-133883	Xiphophorus maculatus	43.43	2.00e-160	558.00
IUUC-Yli-134438	Yarrowia lipolytica	49.23	0.00e+00	662.00
IUUC-Zma-135341	Zea mays	37.55	1.00e-127	448.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence