iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107794

Ensembl Protein ID

EEB05516

UniProt Accession

B6JVW5; B6JVW5_SCHJY

Genbank Protein ID

EEB05516.1

Protein Name

U4/U6 X U5 tri-snRNP complex subunit Prp4 family protein

Genbank Nucleotide ID

KE651166

Gene Name

SJAG_00531

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_00531	EEB05516	EEB05516

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-32	107.4	350	382
UBD/Beta-Prp	7.60e-51	171.0	177	471

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           H++ + c+++ ++   lv+Gs D t +vWD+r+
   Q: 350  HASAIVCMDWaPNgYQLVTGSVDDTARVWDVRK 382
           99*********77688**************986 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.........ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
            ++v  + d +++a+g ++g +k+wd+t+++  r + gh++ v+ v+++p  +          l++g+ D+++++w+  + +++++l+gh ++v  ++f+p
   Q: 177  TSVVRLTGDAKMFASGNWSGQVKIWDTTSMSEQRLYRGHTDRVSGVDWHPAVSswdsnservCLASGAADNLVCLWSGASATPLRVLRGHLARVGRVAFHP 277
           5566678899*******************99977779*****88888777666666667777*************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvk 205
            g  l+s+s d t r+wd+e+g++l  +++gh + v +v++++dg+ll+sG+lD + r+Wd++tg+ +  l   h +++ ++++ +ng +lv+gs d t +
   Q: 278  GGTLLASASYDTTWRMWDVEQGTELL-MQEGHAEGVASVAWQGDGSLLASGGLDAIGRVWDVRTGQSVMVLDA-HASAIVCMDWAPNGYQLVTGSVDDTAR 376
           99************************.********************************************98.*************************** PP
   S: 206  lwdlqtgecvrtlnghtdnvksvrfs....pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav..lsfg.dnvlvlgsedskvniwk 293
           +wd+++ +      +h++ v++vrf      +   lv+ + Dg +r+Wd+    l++ ++ ++s+v+sv++  ++ + ++vlv+ ++d +++++ 
   Q: 377  VWDVRKVTQSCMIPAHKSLVSDVRFVrgaeYEAACLVTSGYDGHVRVWDTLDWSLVHDFEIPESKVMSVDAsiVDKKrGPVLVSSGFDRTARLFT 471
           *****666666799************44444445589999*******************************665555799***********9985 PP

Organism

Schizosaccharomyces japonicus

Protein Sequence
(Fasta)

MNQQIGLEDL ETRAFTEGRT RATKEQAAYF AEKERETRLA ELKVPVEDVG VREALRALKQ 60
PVTLFGENAL DRRLRLQQLM YEAAEKAGFP RTTTESPAES MDVDAESESY IRGTPELLET 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCTAATACA CACCATGAAC CAACAAATCG GCTTGGAGGA CCTGGAAACA CGCGCGTTCA 60
CGGAGGGAAG GACGCGCGCT ACCAAAGAAC AGGCCGCGTA TTTTGCGGAA AAAGAACGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0000398--P:mRNA splicing, via spliceosome
GO:0034247--P:snoRNA splicing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	35.93	7.00e-66	242.00
IUUC-Aml-001737	Ailuropoda melanoleuca	35.25	2.00e-78	284.00
IUUC-Atr-002828	Amborella trichopoda	34.76	5.00e-69	253.00
IUUC-Apl-003723	Anas platyrhynchos	35.84	6.00e-79	286.00
IUUC-Aca-004972	Anolis carolinensis	36.06	3.00e-77	280.00
IUUC-Aly-006531	Arabidopsis lyrata	34.62	2.00e-58	218.00
IUUC-Ath-007367	Arabidopsis thaliana	34.24	7.00e-71	259.00
IUUC-Ago-007893	Ashbya gossypii	37.64	1.00e-60	225.00
IUUC-Acl-008236	Aspergillus clavatus	38.85	8.00e-75	272.00
IUUC-Afl-008522	Aspergillus flavus	36.22	3.00e-81	293.00
IUUC-Afu-008904	Aspergillus fumigatus	39.45	4.00e-77	280.00
IUUC-Ani-009198	Aspergillus nidulans	38.67	9.00e-84	301.00
IUUC-Ang-009662	Aspergillus niger	39.47	2.00e-80	291.00
IUUC-Aor-009881	Aspergillus oryzae	37.42	3.00e-81	293.00
IUUC-Ate-010333	Aspergillus terreus	38.73	4.00e-75	273.00
IUUC-Ame-011697	Astyanax mexicanus	36.20	3.00e-81	293.00
IUUC-Bgr-012254	Blumeria graminis	39.67	2.00e-96	344.00
IUUC-Bta-012615	Bos taurus	35.25	2.00e-78	284.00
IUUC-Bci-013720	Botrytis cinerea	38.77	6.00e-88	315.00
IUUC-Bdi-014302	Brachypodium distachyon	35.08	5.00e-70	256.00
IUUC-Bol-015594	Brassica oleracea	33.48	4.00e-59	220.00
IUUC-Bra-017465	Brassica rapa	33.70	1.00e-59	221.00
IUUC-Cel-018632	Caenorhabditis elegans	36.53	8.00e-69	252.00
IUUC-Cja-019747	Callithrix jacchus	35.25	1.00e-78	285.00
IUUC-Cfa-020288	Canis familiaris	35.25	2.00e-78	284.00
IUUC-Cpo-021440	Cavia porcellus	34.81	3.00e-76	276.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	35.89	3.00e-54	203.00
IUUC-Csa-023139	Chlorocebus sabaeus	36.76	1.00e-63	234.00
IUUC-Cho-024481	Choloepus hoffmanni	34.59	8.00e-75	272.00
IUUC-Cin-025106	Ciona intestinalis	35.54	2.00e-79	287.00
IUUC-Csv-026087	Ciona savignyi	34.44	2.00e-74	271.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	36.81	7.00e-83	300.00
IUUC-Cne-026793	Cryptococcus neoformans	38.94	2.00e-92	330.00
IUUC-Dre-028723	Danio rerio	36.16	9.00e-80	288.00
IUUC-Dno-029299	Dasypus novemcinctus	35.25	1.00e-78	285.00
IUUC-Dse-031562	Dothistroma septosporum	36.67	3.00e-80	290.00
IUUC-Dme-031783	Drosophila melanogaster	34.22	2.00e-67	248.00
IUUC-Ete-032669	Echinops telfairi	35.92	2.00e-79	287.00
IUUC-Eca-033566	Equus caballus	35.25	2.00e-78	284.00
IUUC-Eeu-034524	Erinaceus europaeus	42.74	8.00e-55	205.00
IUUC-Fca-036215	Felis catus	35.25	2.00e-78	284.00
IUUC-Fal-037018	Ficedula albicollis	37.43	3.00e-72	263.00
IUUC-Fox-037936	Fusarium oxysporum	38.00	5.00e-83	299.00
IUUC-Fso-038366	Fusarium solani	39.20	3.00e-90	323.00
IUUC-Gmo-038966	Gadus morhua	33.33	1.00e-53	201.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.94	1.00e-80	291.00
IUUC-Gga-040797	Gallus gallus	35.84	4.00e-79	286.00
IUUC-Gac-042598	Gasterosteus aculeatus	34.49	2.00e-68	251.00
IUUC-Gma-044097	Glycine max	34.23	3.00e-64	237.00
IUUC-Ggo-044682	Gorilla gorilla	35.25	2.00e-78	284.00
IUUC-Hsa-045804	Homo sapiens	35.25	2.00e-78	284.00
IUUC-Hvu-047567	Hordeum vulgare	34.36	4.00e-62	229.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	35.48	5.00e-79	286.00
IUUC-Kpa-049369	Komagataella pastoris	31.33	1.00e-56	211.00
IUUC-Lch-050074	Latimeria chalumnae	34.58	3.00e-68	250.00
IUUC-Lpe-051333	Leersia perrieri	35.55	2.00e-65	241.00
IUUC-Loc-052164	Lepisosteus oculatus	36.42	2.00e-81	293.00
IUUC-Lma-053088	Leptosphaeria maculans	37.08	3.00e-78	283.00
IUUC-Laf-053460	Loxodonta africana	35.25	1.00e-78	284.00
IUUC-Mcc-055859	Macaca mulatta	35.25	2.00e-78	284.00
IUUC-Meu-056134	Macropus eugenii	35.25	4.00e-79	286.00
IUUC-Mor-057251	Magnaporthe oryzae	38.66	3.00e-85	306.00
IUUC-Mpo-057375	Magnaporthe poae	42.52	6.00e-52	195.00
IUUC-Mtr-057656	Medicago truncatula	35.24	1.00e-62	231.00
IUUC-Mla-059145	Melampsora laricipopulina	41.00	3.00e-89	320.00
IUUC-Mga-059855	Meleagris gallopavo	35.84	4.00e-79	286.00
IUUC-Mvi-060372	Microbotryum violaceum	37.09	1.00e-69	255.00
IUUC-Mmr-060826	Microcebus murinus	35.25	3.00e-78	283.00
IUUC-Mdo-062119	Monodelphis domestica	35.25	3.00e-79	287.00
IUUC-Mmu-063351	Mus musculus	35.48	1.00e-78	285.00
IUUC-Mac-064846	Musa acuminata	33.79	9.00e-58	215.00
IUUC-Mpu-066006	Mustela putorius furo	35.25	2.00e-78	284.00
IUUC-Mlu-067722	Myotis lucifugus	35.70	2.00e-79	288.00
IUUC-Nfi-068399	Neosartorya fischeri	40.26	2.00e-82	298.00
IUUC-Ncr-068711	Neurospora crassa	38.81	4.00e-90	323.00
IUUC-Nle-069982	Nomascus leucogenys	35.25	1.00e-78	285.00
IUUC-Opr-070596	Ochotona princeps	35.25	1.00e-78	285.00
IUUC-Ont-072374	Oreochromis niloticus	37.73	2.00e-76	277.00
IUUC-Oan-073166	Ornithorhynchus anatinus	37.36	2.00e-68	250.00
IUUC-Ocu-074371	Oryctolagus cuniculus	35.25	1.00e-78	285.00
IUUC-Oba-075083	Oryza barthii	35.15	2.00e-63	234.00
IUUC-Obr-076405	Oryza brachyantha	34.86	3.00e-63	233.00
IUUC-Ogl-077683	Oryza glaberrima	35.15	2.00e-63	234.00
IUUC-Ogu-078486	Oryza glumaepatula	35.15	7.00e-64	236.00
IUUC-Oin-079679	Oryza indica	35.31	6.00e-66	243.00
IUUC-Olo-080243	Oryza longistaminata	38.49	6.00e-57	212.00
IUUC-Ome-081230	Oryza meridionalis	35.21	5.00e-66	243.00
IUUC-Oni-082961	Oryza nivara	35.21	4.00e-66	243.00
IUUC-Opu-083189	Oryza punctata	35.37	3.00e-64	237.00
IUUC-Oru-084353	Oryza rufipogon	35.31	5.00e-66	243.00
IUUC-Osa-085458	Oryza sativa	35.21	5.00e-66	243.00
IUUC-Ola-086940	Oryzias latipes	36.64	2.00e-77	281.00
IUUC-Olu-087580	Ostreococcus lucimarinus	34.15	1.00e-55	208.00
IUUC-Oga-088703	Otolemur garnettii	33.70	2.00e-72	264.00
IUUC-Oar-089829	Ovis aries	35.25	3.00e-78	283.00
IUUC-Ptr-090838	Pan troglodytes	35.25	2.00e-78	284.00
IUUC-Pan-092261	Papio anubis	35.18	6.00e-77	279.00
IUUC-Psi-093020	Pelodiscus sinensis	34.96	2.00e-78	284.00
IUUC-Pno-094858	Phaeosphaeria nodorum	38.69	2.00e-77	280.00
IUUC-Ppa-095531	Physcomitrella patens	36.75	2.00e-74	271.00
IUUC-Pfo-096812	Poecilia formosa	33.72	2.00e-57	214.00
IUUC-Pab-097805	Pongo abelii	36.26	1.00e-60	225.00
IUUC-Pop-100051	Populus trichocarpa	33.91	2.00e-64	238.00
IUUC-Pca-100152	Procavia capensis	35.25	3.00e-78	283.00
IUUC-Ppe-101244	Prunus persica	33.11	5.00e-63	233.00
IUUC-Pva-102529	Pteropus vampyrus	33.92	8.00e-72	262.00
IUUC-Pgr-103550	Puccinia graminis	35.32	5.00e-90	322.00
IUUC-Ptt-103951	Puccinia triticina	35.22	3.00e-79	287.00
IUUC-Pte-104151	Pyrenophora teres	36.09	3.00e-72	263.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	37.83	6.00e-74	269.00
IUUC-Rno-105747	Rattus norvegicus	35.48	2.00e-78	284.00
IUUC-Sce-106418	Saccharomyces cerevisiae	32.15	7.00e-67	245.00
IUUC-Sha-107334	Sarcophilus harrisii	35.25	4.00e-79	286.00
IUUC-Spo-108189	Schizosaccharomyces pombe	51.39	5.00e-136	475.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	39.19	1.00e-87	315.00
IUUC-Smo-109578	Selaginella moellendorffii	33.95	7.00e-67	246.00
IUUC-Sit-110102	Setaria italica	34.99	2.00e-65	241.00
IUUC-Sly-111668	Solanum lycopersicum	34.97	2.00e-67	247.00
IUUC-Stu-111928	Solanum tuberosum	34.97	2.00e-67	248.00
IUUC-Sar-113266	Sorex araneus	38.71	2.00e-62	231.00
IUUC-Sbi-114134	Sorghum bicolor	34.99	3.00e-66	243.00
IUUC-Sre-115114	Sporisorium reilianum	41.51	3.00e-87	313.00
IUUC-Ssc-115443	Sus scrofa	35.25	2.00e-78	284.00
IUUC-Tgu-117157	Taeniopygia guttata	35.84	8.00e-80	288.00
IUUC-Tru-118587	Takifugu rubripes	37.01	2.00e-76	277.00
IUUC-Tsy-119157	Tarsius syrichta	36.81	8.00e-67	245.00
IUUC-Tni-120427	Tetraodon nigroviridis	36.11	2.00e-76	277.00
IUUC-Tca-121368	Theobroma cacao	33.60	6.00e-67	246.00
IUUC-Tre-122074	Trichoderma reesei	39.83	2.00e-90	323.00
IUUC-Tvi-122349	Trichoderma virens	37.83	1.00e-88	318.00
IUUC-Tae-124256	Triticum aestivum	35.36	3.00e-60	224.00
IUUC-Tur-126532	Triticum urartu	37.24	2.00e-64	237.00
IUUC-Tme-126951	Tuber melanosporum	41.10	2.00e-92	331.00
IUUC-Tbe-128136	Tupaia belangeri	33.04	2.00e-67	247.00
IUUC-Ttr-129169	Tursiops truncatus	33.45	2.00e-42	164.00
IUUC-Uma-129399	Ustilago maydis	41.09	6.00e-87	312.00
IUUC-Vda-129842	Verticillium dahliae	39.29	1.00e-88	318.00
IUUC-Vpa-130440	Vicugna pacos	35.25	1.00e-78	285.00
IUUC-Vvi-131075	Vitis vinifera	34.91	2.00e-66	244.00
IUUC-Xma-133002	Xiphophorus maculatus	37.91	2.00e-62	230.00
IUUC-Yli-134569	Yarrowia lipolytica	34.10	9.00e-74	268.00
IUUC-Zma-135799	Zea mays	32.91	2.00e-61	228.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence