iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Rno-105655

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Similar to RIKEN cDNA 1500041N16, isoform CRA_a; WD repeat domain-containing protein 83

Genbank Nucleotide ID

AABR07072634

Gene Name

Wdr83; RGD1306947; rCG_51096

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000004287.6	ENSRNOT00000005917.5	ENSRNOP00000005917.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-33	112.8	107	142
UBD/Beta-Prp	8.60e-50	170.0	18	161

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH+++v+ ++f  + t ++sGs D ++++WD r+ +
   Q: 107  GHAGKVNTVQFnEEaTVILSGSIDSSVRCWDCRSRK 142
           8**********54489***************98865 PP

UBD/Beta-Prp

   S: 129  leetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrt 217
           l+ tl+  +g+v+ v+++ dgn++ +++ D+t++lW+  +g+llrt +g h   v   + + +  +l sg+ d+tv lwd+ tg++vr+
   Q: 18   LK-TLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSG-HGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRK 104
           55.7777788999999999999999999999999999999999999998.999999998666668999999999999999999999999 PP
   S: 218  lnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdl..lktlqlhnssvisvav 272
           ++gh   v+ v+f ++ + ++sgs D s+r+Wd+rs+++  ++tl   ++ ++sv+v
   Q: 105  FRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPepVQTLDEARDGISSVKV 161
           999999999999999999999999999999999988865226777777777777776 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAFPEPKPRA PELPRKQLKT LDCGQGAVRA VRFNVDGNYC LTCGSDKTLK LWNPLRGTLL 60
RTYSGHGYEV LDAAGSFDNS HLCSGGGDKT VVLWDVATGQ VVRKFRGHAG KVNTVQFNEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTTAAGCT TGGAAGGAAG GCGGTCTCTA TACAAACAGC AGTAAAGCGG GAAGCGGACT 60
AATAAACTTA AAGTATGGCT TTTCCTGAGC CAAAGCCGCG GGCACCGGAG CTGCCGCGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005737--C:cytoplasm
GO:0000398--P:mRNA splicing, via spliceosome

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002160	Ailuropoda melanoleuca	92.04	5.00e-175	606.00
IUUC-Atr-002647	Amborella trichopoda	50.34	1.00e-90	325.00
IUUC-Aca-004948	Anolis carolinensis	79.62	1.00e-145	508.00
IUUC-Aly-006489	Arabidopsis lyrata	50.51	1.00e-81	296.00
IUUC-Ath-007099	Arabidopsis thaliana	50.84	1.00e-81	296.00
IUUC-Acl-008374	Aspergillus clavatus	36.62	9.00e-50	190.00
IUUC-Afl-008506	Aspergillus flavus	37.67	7.00e-51	194.00
IUUC-Afu-009098	Aspergillus fumigatus	32.75	8.00e-44	171.00
IUUC-Ang-009705	Aspergillus niger	33.55	8.00e-45	174.00
IUUC-Aor-010031	Aspergillus oryzae	37.67	6.00e-51	194.00
IUUC-Ame-011056	Astyanax mexicanus	72.35	7.00e-139	486.00
IUUC-Bgr-012109	Blumeria graminis	41.55	4.00e-56	211.00
IUUC-Bta-012476	Bos taurus	92.38	3.00e-175	607.00
IUUC-Bci-013860	Botrytis cinerea	35.47	4.00e-45	175.00
IUUC-Bdi-014565	Brachypodium distachyon	49.83	5.00e-88	317.00
IUUC-Bol-016204	Brassica oleracea	50.51	3.00e-81	294.00
IUUC-Bra-018093	Brassica rapa	50.51	4.00e-81	294.00
IUUC-Cel-018500	Caenorhabditis elegans	48.46	1.00e-83	302.00
IUUC-Cja-019279	Callithrix jacchus	93.02	2.00e-165	574.00
IUUC-Cfa-020516	Canis familiaris	91.75	4.00e-175	606.00
IUUC-Cpo-021427	Cavia porcellus	90.48	7.00e-164	569.00
IUUC-Cre-022775	Chlamydomonas reinhardtii	45.48	7.00e-74	270.00
IUUC-Csa-023449	Chlorocebus sabaeus	92.38	1.00e-165	575.00
IUUC-Cin-025637	Ciona intestinalis	59.39	3.00e-108	384.00
IUUC-Cgl-026458	Colletotrichum gloeosporioides	36.81	3.00e-50	192.00
IUUC-Cne-026994	Cryptococcus neoformans	35.50	4.00e-50	191.00
IUUC-Dre-028239	Danio rerio	73.25	8.00e-132	462.00
IUUC-Dno-029408	Dasypus novemcinctus	91.11	9.00e-174	602.00
IUUC-Dor-030684	Dipodomys ordii	89.27	4.00e-108	384.00
IUUC-Dse-031344	Dothistroma septosporum	46.27	2.00e-55	209.00
IUUC-Dme-031634	Drosophila melanogaster	48.61	1.00e-77	282.00
IUUC-Ete-033126	Echinops telfairi	84.76	1.00e-157	548.00
IUUC-Eca-034356	Equus caballus	82.54	9.00e-150	522.00
IUUC-Eeu-035196	Erinaceus europaeus	89.94	3.00e-78	285.00
IUUC-Fca-036231	Felis catus	91.43	8.00e-174	602.00
IUUC-Fox-038076	Fusarium oxysporum	37.76	1.00e-54	206.00
IUUC-Fso-038093	Fusarium solani	36.67	3.00e-47	182.00
IUUC-Gmo-039056	Gadus morhua	73.31	7.00e-134	469.00
IUUC-Ggr-039981	Gaeumannomyces graminis	33.74	4.00e-44	171.00
IUUC-Gga-041042	Gallus gallus	76.85	2.00e-147	514.00
IUUC-Gac-042638	Gasterosteus aculeatus	74.18	6.00e-138	483.00
IUUC-Gma-042689	Glycine max	51.02	6.00e-90	323.00
IUUC-Ggo-044720	Gorilla gorilla	93.02	2.00e-166	577.00
IUUC-Hsa-046056	Homo sapiens	93.33	5.00e-167	580.00
IUUC-Hvu-047675	Hordeum vulgare	47.55	8.00e-86	310.00
IUUC-Itr-048733	Ictidomys tridecemlineatus	91.45	3.00e-167	580.00
IUUC-Lch-050634	Latimeria chalumnae	77.63	1.00e-131	462.00
IUUC-Lpe-051470	Leersia perrieri	50.17	3.00e-88	318.00
IUUC-Loc-052452	Lepisosteus oculatus	76.57	9.00e-134	469.00
IUUC-Lma-053235	Leptosphaeria maculans	41.99	6.00e-29	121.00
IUUC-Laf-054315	Loxodonta africana	92.38	2.00e-165	575.00
IUUC-Mcc-054923	Macaca mulatta	92.38	9.00e-166	575.00
IUUC-Mor-056936	Magnaporthe oryzae	38.18	3.00e-47	182.00
IUUC-Mtr-058595	Medicago truncatula	51.55	3.00e-89	322.00
IUUC-Mla-058902	Melampsora laricipopulina	40.57	1.00e-61	229.00
IUUC-Mvi-060471	Microbotryum violaceum	42.62	5.00e-71	260.00
IUUC-Mmr-061665	Microcebus murinus	92.38	9.00e-176	608.00
IUUC-Mdo-062750	Monodelphis domestica	81.98	5.00e-134	470.00
IUUC-Mmu-063750	Mus musculus	97.46	0.00e+00	638.00
IUUC-Mac-065441	Musa acuminata	51.02	2.00e-89	322.00
IUUC-Mpu-066863	Mustela putorius furo	90.79	2.00e-173	600.00
IUUC-Mlu-067645	Myotis lucifugus	90.16	1.00e-171	595.00
IUUC-Nfi-068549	Neosartorya fischeri	36.04	4.00e-48	185.00
IUUC-Ncr-068816	Neurospora crassa	34.91	4.00e-41	162.00
IUUC-Nle-069457	Nomascus leucogenys	93.02	1.00e-166	578.00
IUUC-Opr-070874	Ochotona princeps	89.04	2.00e-74	271.00
IUUC-Ont-071674	Oreochromis niloticus	73.95	2.00e-122	431.00
IUUC-Oan-073391	Ornithorhynchus anatinus	80.06	4.00e-152	530.00
IUUC-Ocu-074186	Oryctolagus cuniculus	89.84	3.00e-166	577.00
IUUC-Oba-075414	Oryza barthii	51.25	2.00e-84	305.00
IUUC-Obr-076739	Oryza brachyantha	49.15	1.00e-86	312.00
IUUC-Ogl-076962	Oryza glaberrima	50.17	3.00e-87	315.00
IUUC-Ogu-078831	Oryza glumaepatula	50.17	2.00e-87	315.00
IUUC-Oin-079985	Oryza indica	49.83	3.00e-87	315.00
IUUC-Ome-081333	Oryza meridionalis	48.57	4.00e-80	291.00
IUUC-Oni-082558	Oryza nivara	49.83	3.00e-87	315.00
IUUC-Opu-084091	Oryza punctata	50.51	6.00e-89	320.00
IUUC-Oru-085253	Oryza rufipogon	49.82	6.00e-81	293.00
IUUC-Osa-086077	Oryza sativa	49.83	3.00e-87	315.00
IUUC-Ola-086946	Oryzias latipes	72.93	4.00e-136	477.00
IUUC-Olu-087604	Ostreococcus lucimarinus	40.32	1.00e-54	206.00
IUUC-Oga-088681	Otolemur garnettii	91.00	3.00e-171	593.00
IUUC-Oar-089913	Ovis aries	91.43	3.00e-172	597.00
IUUC-Ptr-091343	Pan troglodytes	92.70	1.00e-164	572.00
IUUC-Pan-092078	Papio anubis	92.38	1.00e-165	575.00
IUUC-Psi-093190	Pelodiscus sinensis	79.42	4.00e-152	530.00
IUUC-Pno-095078	Phaeosphaeria nodorum	40.58	9.00e-55	207.00
IUUC-Ppa-095777	Physcomitrella patens	48.99	5.00e-87	314.00
IUUC-Pfo-097153	Poecilia formosa	74.59	8.00e-130	456.00
IUUC-Pab-098307	Pongo abelii	91.77	2.00e-163	568.00
IUUC-Pop-099315	Populus trichocarpa	52.70	2.00e-84	305.00
IUUC-Pca-100538	Procavia capensis	90.33	2.00e-144	504.00
IUUC-Ppe-101632	Prunus persica	50.00	5.00e-90	323.00
IUUC-Pva-102484	Pteropus vampyrus	92.70	8.00e-177	612.00
IUUC-Pgr-103495	Puccinia graminis	40.29	8.00e-64	236.00
IUUC-Ptt-103975	Puccinia triticina	39.56	2.00e-62	232.00
IUUC-Pte-104354	Pyrenophora teres	37.55	1.00e-42	167.00
IUUC-Pyt-104692	Pyrenophora triticirepentis	38.27	1.00e-42	166.00
IUUC-Sha-107130	Sarcophilus harrisii	80.51	4.00e-108	383.00
IUUC-Sja-107933	Schizosaccharomyces japonicus	40.91	9.00e-58	216.00
IUUC-Spo-108131	Schizosaccharomyces pombe	40.36	6.00e-58	217.00
IUUC-Ssl-108405	Sclerotinia sclerotiorum	35.47	2.00e-45	176.00
IUUC-Smo-109004	Selaginella moellendorffii	48.81	5.00e-81	293.00
IUUC-Sit-110508	Setaria italica	50.85	8.00e-89	320.00
IUUC-Sly-111093	Solanum lycopersicum	48.65	5.00e-80	290.00
IUUC-Stu-112380	Solanum tuberosum	48.65	6.00e-80	290.00
IUUC-Sar-113127	Sorex araneus	85.52	3.00e-70	258.00
IUUC-Sbi-114461	Sorghum bicolor	49.83	3.00e-87	315.00
IUUC-Sre-115020	Sporisorium reilianum	37.01	3.00e-41	163.00
IUUC-Ssc-115632	Sus scrofa	93.25	3.00e-174	603.00
IUUC-Tru-118039	Takifugu rubripes	70.92	4.00e-127	447.00
IUUC-Tsy-119239	Tarsius syrichta	94.08	4.00e-94	337.00
IUUC-Tni-120097	Tetraodon nigroviridis	69.59	4.00e-125	440.00
IUUC-Tca-121695	Theobroma cacao	52.72	5.00e-93	334.00
IUUC-Tre-122182	Trichoderma reesei	36.16	1.00e-48	186.00
IUUC-Tvi-122429	Trichoderma virens	36.36	1.00e-51	197.00
IUUC-Tae-125136	Triticum aestivum	51.53	2.00e-90	325.00
IUUC-Tur-126216	Triticum urartu	51.52	2.00e-89	322.00
IUUC-Tme-127030	Tuber melanosporum	42.28	9.00e-60	223.00
IUUC-Tbe-127686	Tupaia belangeri	92.06	3.00e-101	361.00
IUUC-Ttr-128770	Tursiops truncatus	92.06	7.00e-175	605.00
IUUC-Uma-129446	Ustilago maydis	35.39	4.00e-37	149.00
IUUC-Vda-129680	Verticillium dahliae	38.93	3.00e-42	164.00
IUUC-Vvi-131292	Vitis vinifera	52.56	2.00e-91	328.00
IUUC-Xtr-132204	Xenopus tropicalis	75.80	1.00e-146	512.00
IUUC-Xma-133727	Xiphophorus maculatus	73.31	2.00e-129	455.00
IUUC-Zma-135908	Zea mays	49.83	7.00e-82	296.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence