iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000011315.6	ENSRNOT00000080089.1	ENSRNOP00000072279.1
ENSRNOG00000011315.6	ENSRNOT00000015257.5	ENSRNOP00000015257.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.50e-06	26.5	104	137

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrt 32
           gH++ +tcl++  s+ +l+s+  Dg+ik+W++ +
   Q: 104  GHSEAITCLEWdqSGSRLLSADADGQIKCWSMAD 137
           8**********965599*************9765 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAAPDPGRWG ECGPRPPGRL GARGGQEPGT VLGAVGMMDL AYVCEWEKWA KSTYCPSLPL 60
ACAWSCRNLI AFTTDLRNDD QDLTHMIHIL DTEHPWEVHS VSSGHSEAIT CLEWDQSGSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCTGCGCCT GGTCCTGCAG GAACCTCATT GCCTTCACCA CAGACCTACG CAATGATGAC 60
CAGGGTAAGT GCTAGTTCTG TTTCCCTGAC TGGGACCTGG GGATTGAGAC CAAGTGGGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR021665--Mediator_Med16
IPR011041--Quinoprot_gluc/sorb_DH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF11635--Med16

SMART

SM00320--WD40

Gene Ontology

GO:0016592--C:mediator complex
GO:0016020--C:membrane
GO:0003824--F:catalytic activity
GO:0004872--F:receptor activity
GO:0030375--F:thyroid hormone receptor coactivator activity
GO:0003713--F:transcription coactivator activity
GO:0030521--P:androgen receptor signaling pathway
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0006367--P:transcription initiation from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011407	Astyanax mexicanus	72.03	0.00e+00	1172.00
IUUC-Bta-012729	Bos taurus	89.88	0.00e+00	1459.00
IUUC-Cja-019000	Callithrix jacchus	92.06	3.00e-94	337.00
IUUC-Cfa-020876	Canis familiaris	92.87	0.00e+00	1519.00
IUUC-Cpo-021655	Cavia porcellus	92.16	0.00e+00	1497.00
IUUC-Dre-027473	Danio rerio	74.65	0.00e+00	1243.00
IUUC-Dno-029564	Dasypus novemcinctus	90.34	0.00e+00	1027.00
IUUC-Eca-033914	Equus caballus	93.52	0.00e+00	894.00
IUUC-Fca-036338	Felis catus	94.58	0.00e+00	826.00
IUUC-Fal-037249	Ficedula albicollis	84.58	0.00e+00	1439.00
IUUC-Gmo-039447	Gadus morhua	71.79	3.00e-167	582.00
IUUC-Gga-041100	Gallus gallus	84.71	0.00e+00	1356.00
IUUC-Gac-042603	Gasterosteus aculeatus	72.28	1.00e-160	560.00
IUUC-Ggo-044794	Gorilla gorilla	92.50	0.00e+00	1120.00
IUUC-Hsa-045722	Homo sapiens	92.44	0.00e+00	823.00
IUUC-Itr-048948	Ictidomys tridecemlineatus	93.01	0.00e+00	1516.00
IUUC-Loc-052871	Lepisosteus oculatus	77.70	0.00e+00	1278.00
IUUC-Mcc-055201	Macaca mulatta	91.97	0.00e+00	1121.00
IUUC-Mga-059807	Meleagris gallopavo	81.40	0.00e+00	1345.00
IUUC-Mmr-060781	Microcebus murinus	91.15	0.00e+00	1508.00
IUUC-Mpu-066388	Mustela putorius furo	92.15	0.00e+00	1505.00
IUUC-Ont-072316	Oreochromis niloticus	76.33	0.00e+00	1238.00
IUUC-Ola-086721	Oryzias latipes	74.67	0.00e+00	1209.00
IUUC-Oga-088875	Otolemur garnettii	93.05	0.00e+00	1504.00
IUUC-Oar-090444	Ovis aries	91.44	0.00e+00	1490.00
IUUC-Ptr-091117	Pan troglodytes	93.41	0.00e+00	809.00
IUUC-Pan-091807	Papio anubis	92.80	0.00e+00	1435.00
IUUC-Pfo-097356	Poecilia formosa	76.30	0.00e+00	1240.00
IUUC-Pab-097953	Pongo abelii	90.94	0.00e+00	1082.00
IUUC-Pca-100896	Procavia capensis	91.30	0.00e+00	1465.00
IUUC-Tgu-116750	Taeniopygia guttata	84.01	0.00e+00	1431.00
IUUC-Tru-118405	Takifugu rubripes	75.24	0.00e+00	1262.00
IUUC-Tni-120217	Tetraodon nigroviridis	77.27	0.00e+00	959.00
IUUC-Ttr-129222	Tursiops truncatus	91.00	0.00e+00	1472.00
IUUC-Xtr-132084	Xenopus tropicalis	80.15	0.00e+00	1269.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence