iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105571

Ensembl Protein ID

ENSRNOP00000022271.5

UniProt Accession

F1LNV7; F1LNV7_RAT

Genbank Protein ID

ENSRNOP00000022271

Protein Name

General transcription factor 3C polypeptide 1

Genbank Nucleotide ID

AC122963

Gene Name

Gtf3c1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000016218.7	ENSRNOT00000022271.6	ENSRNOP00000022271.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	22.76	2.80e-01	33.90	IUUC-Sce-106188

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MDALESLLDE VALEGLDGLC LPALWSRLES RSPAFPLPLE PYTQEFLWRA LVTHPGISFY 60
EEPRERPDLQ LQDRYEEIDL ETGILESRRD PVTLEDVYPI HMILENKDGI QGSCRYFKER 120

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Nucleotide Sequence
(Fasta)

CCGGGCGCTG CTAACTGAAG AGGCCATGGA CGCGCTCGAG TCGTTGTTGG ACGAGGTGGC 60
CCTGGAGGGG CTCGACGGCC TGTGCCTGCC CGCGCTGTGG AGCCGCCTGG AATCCCGCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR007309--TFIIIC_Bblock-bd

Pfam

PF04182--B-block_TFIIIC

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0016020--C:membrane
GO:0005730--C:nucleolus
GO:0000127--C:transcription factor TFIIIC complex

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001476	Ailuropoda melanoleuca	76.56	0.00e+00	3050.00
IUUC-Apl-004061	Anas platyrhynchos	61.89	0.00e+00	2395.00
IUUC-Cja-019252	Callithrix jacchus	83.71	0.00e+00	2368.00
IUUC-Cfa-020574	Canis familiaris	74.24	0.00e+00	2889.00
IUUC-Cpo-021734	Cavia porcellus	74.43	0.00e+00	2844.00
IUUC-Csa-023992	Chlorocebus sabaeus	76.91	0.00e+00	3061.00
IUUC-Fal-036950	Ficedula albicollis	65.31	0.00e+00	1592.00
IUUC-Gac-041783	Gasterosteus aculeatus	27.27	1.00e+00	29.30
IUUC-Ggo-045640	Gorilla gorilla	76.44	0.00e+00	2914.00
IUUC-Hsa-046368	Homo sapiens	76.68	0.00e+00	3026.00
IUUC-Itr-048444	Ictidomys tridecemlineatus	80.38	0.00e+00	3146.00
IUUC-Mcc-054783	Macaca mulatta	76.33	0.00e+00	3041.00
IUUC-Mmu-064164	Mus musculus	96.60	0.00e+00	2666.00
IUUC-Mpu-066051	Mustela putorius furo	74.06	0.00e+00	2890.00
IUUC-Nle-069462	Nomascus leucogenys	80.40	0.00e+00	2638.00
IUUC-Ptr-091115	Pan troglodytes	77.72	0.00e+00	2875.00
IUUC-Pab-097831	Pongo abelii	74.34	0.00e+00	2881.00
IUUC-Sce-106188	Saccharomyces cerevisiae	22.76	3.60e-02	33.90
IUUC-Tgu-116880	Taeniopygia guttata	62.01	0.00e+00	2436.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence