iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
miRTarBase	microRNA	TRANSFAC	RepTar
RAID2
Post-translational Modifications (PTMs)
PHOSIDA
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-20	71.7	265	300

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf....sdtl.....lvsGsdDgtikvWD 29
           +Htd+v+ + +       +     ++s++ Dg++ +W+
   Q: 265  THTDPVYQVLWlpepR--HshrfqVLSAATDGKVLLWR 300
           5***********6651..3445679************8 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MAMCASPRPF RRVGSAGAAA LAAGGAGGAE RRGRPAPLQD ETLGVASVPS QWRSVQGIRG 60
ETKSCQTAGI ATAESSAQAR THADAQVQTE APEEPAAMAP VSQYDTLRLE AFLRRVEAMV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGACCGTCG CCATGGCAAT GTGCGCGTCG CCCAGGCCTT TTCGGCGCGT TGGAAGCGCT 60
GGAGCTGCTG CCCTGGCTGC TGGCGGGGCT GGCGGCGCCG AACGGCGAGG GCGGCCTGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005868--C:cytoplasmic dynein complex
GO:0005829--C:cytosol
GO:0060271--P:cilium assembly

KEGG

mmu:71820

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002326	Ailuropoda melanoleuca	85.24	0.00e+00	848.00
IUUC-Apl-004015	Anas platyrhynchos	67.79	0.00e+00	637.00
IUUC-Ame-010762	Astyanax mexicanus	53.01	3.00e-147	515.00
IUUC-Bta-013392	Bos taurus	84.52	0.00e+00	890.00
IUUC-Cja-019374	Callithrix jacchus	84.55	0.00e+00	847.00
IUUC-Cfa-020365	Canis familiaris	86.14	0.00e+00	828.00
IUUC-Csa-023810	Chlorocebus sabaeus	85.54	0.00e+00	882.00
IUUC-Cho-024515	Choloepus hoffmanni	79.68	4.00e-167	580.00
IUUC-Cin-025690	Ciona intestinalis	29.71	9.00e-56	211.00
IUUC-Csv-026220	Ciona savignyi	30.75	2.00e-53	203.00
IUUC-Dre-028439	Danio rerio	51.40	6.00e-146	510.00
IUUC-Dno-029916	Dasypus novemcinctus	84.95	0.00e+00	862.00
IUUC-Dor-030853	Dipodomys ordii	83.61	0.00e+00	895.00
IUUC-Eca-033204	Equus caballus	83.79	0.00e+00	806.00
IUUC-Fca-036470	Felis catus	86.52	0.00e+00	843.00
IUUC-Fal-037484	Ficedula albicollis	64.99	0.00e+00	664.00
IUUC-Gmo-039252	Gadus morhua	49.11	6.00e-138	484.00
IUUC-Gga-040701	Gallus gallus	65.55	2.00e-173	602.00
IUUC-Gac-041440	Gasterosteus aculeatus	49.70	2.00e-138	486.00
IUUC-Ggo-044509	Gorilla gorilla	84.92	0.00e+00	843.00
IUUC-Hsa-046030	Homo sapiens	85.09	0.00e+00	840.00
IUUC-Itr-048001	Ictidomys tridecemlineatus	86.22	0.00e+00	900.00
IUUC-Lch-050603	Latimeria chalumnae	57.72	2.00e-168	585.00
IUUC-Loc-052914	Lepisosteus oculatus	51.31	2.00e-134	472.00
IUUC-Laf-053957	Loxodonta africana	82.09	0.00e+00	719.00
IUUC-Mcc-054805	Macaca mulatta	85.35	0.00e+00	885.00
IUUC-Meu-056115	Macropus eugenii	79.00	0.00e+00	832.00
IUUC-Mga-059377	Meleagris gallopavo	66.24	0.00e+00	652.00
IUUC-Mmr-061203	Microcebus murinus	88.12	0.00e+00	886.00
IUUC-Mdo-062646	Monodelphis domestica	79.20	0.00e+00	809.00
IUUC-Mpu-065923	Mustela putorius furo	81.67	0.00e+00	825.00
IUUC-Mlu-067705	Myotis lucifugus	85.35	0.00e+00	886.00
IUUC-Nle-069635	Nomascus leucogenys	85.15	0.00e+00	798.00
IUUC-Opr-070939	Ochotona princeps	69.15	8.00e-151	526.00
IUUC-Ont-072205	Oreochromis niloticus	47.90	7.00e-129	454.00
IUUC-Oan-073427	Ornithorhynchus anatinus	73.31	0.00e+00	699.00
IUUC-Ocu-074234	Oryctolagus cuniculus	85.24	0.00e+00	846.00
IUUC-Ola-086461	Oryzias latipes	49.60	2.00e-136	479.00
IUUC-Oga-088616	Otolemur garnettii	87.72	0.00e+00	714.00
IUUC-Ptr-090563	Pan troglodytes	84.95	0.00e+00	843.00
IUUC-Pan-092105	Papio anubis	85.74	0.00e+00	863.00
IUUC-Psi-093169	Pelodiscus sinensis	65.31	0.00e+00	680.00
IUUC-Pma-094688	Petromyzon marinus	38.09	1.00e-86	313.00
IUUC-Pfo-096136	Poecilia formosa	49.20	8.00e-122	430.00
IUUC-Pab-098286	Pongo abelii	84.75	0.00e+00	846.00
IUUC-Pca-100577	Procavia capensis	79.60	0.00e+00	777.00
IUUC-Pva-103194	Pteropus vampyrus	86.22	0.00e+00	909.00
IUUC-Rno-105958	Rattus norvegicus	95.53	0.00e+00	956.00
IUUC-Sha-107438	Sarcophilus harrisii	80.84	0.00e+00	813.00
IUUC-Ssc-116210	Sus scrofa	84.33	0.00e+00	869.00
IUUC-Tgu-116704	Taeniopygia guttata	64.97	0.00e+00	666.00
IUUC-Tru-117530	Takifugu rubripes	47.68	4.00e-125	441.00
IUUC-Tni-120848	Tetraodon nigroviridis	45.08	7.00e-104	370.00
IUUC-Ttr-128697	Tursiops truncatus	88.75	0.00e+00	724.00
IUUC-Xtr-132843	Xenopus tropicalis	59.24	1.00e-176	612.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence