iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bta-013458

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

THO complex 6 homolog

Genbank Nucleotide ID

DAAA02057322

Gene Name

THOC6; BOS_22422

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000001415.4	ENSBTAT00000001855.4	ENSBTAP00000001855.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-13	51.1	166	205

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
           gHtd ++cla+   ++ ++sG+ Dg +++WDlrt + +++
   Q: 166  GHTDYIHCLALreRSPEVLSGGEDGAVRLWDLRTAKEVQT 205
           8**********98559******************998875 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

MERAAQQAVP LGQMEVFQAL QRLHMTIFSQ SVSPCGKFLA AGNNYGQIAI FSLSAALSSE 60
AKEESKKPMV TFQAHDGPVY SMVSTDRHLL SAGDGEVKAW LWAEILKKGC KELWRRQPPY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTCTCTTG ATGGAGCGAG CGGCGCAGCA AGCGGTGCCT CTGGGTCAGG TGAGGGGGGG 60
CGATGCGCAG TGCCTTCTGG GATTTGTAGT TCACGCCCGG CTCCGAAGGG GCACGGCAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005622--C:intracellular
GO:0000784--C:nuclear chromosome, telomeric region
GO:0016607--C:nuclear speck
GO:0000445--C:THO complex part of transcription export complex
GO:0007417--P:central nervous system development
GO:0043066--P:negative regulation of apoptotic process
GO:0046784--P:viral mRNA export from host cell nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001101	Aegilops tauschii	29.03	2.00e-28	119.00
IUUC-Aml-001693	Ailuropoda melanoleuca	96.19	6.00e-179	619.00
IUUC-Atr-002699	Amborella trichopoda	29.20	3.00e-23	102.00
IUUC-Aca-004231	Anolis carolinensis	69.82	4.00e-126	444.00
IUUC-Aly-006385	Arabidopsis lyrata	29.55	2.00e-27	116.00
IUUC-Ath-006723	Arabidopsis thaliana	29.04	2.00e-27	116.00
IUUC-Ame-010813	Astyanax mexicanus	64.65	8.00e-88	316.00
IUUC-Bdi-014935	Brachypodium distachyon	28.63	3.00e-28	119.00
IUUC-Bol-015442	Brassica oleracea	29.39	1.00e-27	117.00
IUUC-Bra-017807	Brassica rapa	30.09	3.00e-28	119.00
IUUC-Cja-019061	Callithrix jacchus	95.61	3.00e-177	613.00
IUUC-Cfa-021146	Canis familiaris	95.89	2.00e-179	621.00
IUUC-Cpo-022512	Cavia porcellus	95.89	6.00e-180	622.00
IUUC-Csa-023055	Chlorocebus sabaeus	95.31	1.00e-178	618.00
IUUC-Cho-024693	Choloepus hoffmanni	94.85	2.00e-97	347.00
IUUC-Cin-025181	Ciona intestinalis	36.02	2.00e-57	216.00
IUUC-Csv-025852	Ciona savignyi	35.22	2.00e-49	189.00
IUUC-Dre-028221	Danio rerio	60.25	6.00e-118	416.00
IUUC-Dno-029200	Dasypus novemcinctus	89.95	1.00e-86	311.00
IUUC-Dor-030863	Dipodomys ordii	94.13	4.00e-176	610.00
IUUC-Dme-032016	Drosophila melanogaster	27.59	4.00e-36	145.00
IUUC-Eca-034363	Equus caballus	96.77	0.00e+00	627.00
IUUC-Fca-036546	Felis catus	96.19	1.00e-179	622.00
IUUC-Gmo-038513	Gadus morhua	57.94	3.00e-107	381.00
IUUC-Gac-042606	Gasterosteus aculeatus	56.52	2.00e-110	392.00
IUUC-Gma-043171	Glycine max	27.85	3.00e-31	129.00
IUUC-Ggo-044877	Gorilla gorilla	96.48	6.00e-180	622.00
IUUC-Hsa-045813	Homo sapiens	95.89	7.00e-180	622.00
IUUC-Hvu-047782	Hordeum vulgare	31.08	2.00e-20	91.70
IUUC-Itr-047876	Ictidomys tridecemlineatus	95.89	4.00e-179	620.00
IUUC-Lch-049506	Latimeria chalumnae	64.13	4.00e-119	421.00
IUUC-Lpe-051203	Leersia perrieri	29.28	6.00e-24	104.00
IUUC-Loc-052451	Lepisosteus oculatus	50.92	1.00e-88	319.00
IUUC-Laf-053864	Loxodonta africana	94.72	2.00e-176	611.00
IUUC-Mcc-055705	Macaca mulatta	88.32	5.00e-153	533.00
IUUC-Meu-055926	Macropus eugenii	90.55	9.00e-157	545.00
IUUC-Mtr-058556	Medicago truncatula	28.53	4.00e-31	129.00
IUUC-Mmr-060836	Microcebus murinus	95.60	7.00e-179	619.00
IUUC-Mdo-062534	Monodelphis domestica	90.85	3.00e-156	544.00
IUUC-Mmu-063560	Mus musculus	94.72	1.00e-175	608.00
IUUC-Mac-065134	Musa acuminata	27.42	2.00e-25	109.00
IUUC-Mpu-066031	Mustela putorius furo	97.07	0.00e+00	628.00
IUUC-Mlu-068051	Myotis lucifugus	92.38	3.00e-169	587.00
IUUC-Nle-069080	Nomascus leucogenys	95.31	3.00e-178	617.00
IUUC-Opr-070787	Ochotona princeps	90.03	7.00e-165	572.00
IUUC-Ont-071952	Oreochromis niloticus	55.28	2.00e-109	388.00
IUUC-Oan-073334	Ornithorhynchus anatinus	83.70	1.00e-118	419.00
IUUC-Oba-075175	Oryza barthii	29.83	7.00e-25	107.00
IUUC-Obr-076393	Oryza brachyantha	30.39	1.00e-24	107.00
IUUC-Ogl-077603	Oryza glaberrima	34.75	4.00e-18	84.70
IUUC-Ogu-078211	Oryza glumaepatula	29.83	9.00e-25	107.00
IUUC-Oin-079554	Oryza indica	29.83	4.00e-25	108.00
IUUC-Olo-080922	Oryza longistaminata	31.85	2.00e-22	100.00
IUUC-Ome-081127	Oryza meridionalis	23.20	1.00e-11	64.70
IUUC-Oni-082376	Oryza nivara	29.83	9.00e-25	107.00
IUUC-Opu-083163	Oryza punctata	29.28	3.00e-24	106.00
IUUC-Oru-084311	Oryza rufipogon	29.83	1.00e-24	107.00
IUUC-Osa-085762	Oryza sativa	34.75	7.00e-18	84.30
IUUC-Oga-088804	Otolemur garnettii	94.72	2.00e-176	611.00
IUUC-Oar-090095	Ovis aries	99.41	0.00e+00	646.00
IUUC-Ptr-090731	Pan troglodytes	96.19	7.00e-180	622.00
IUUC-Pan-092595	Papio anubis	95.91	8.00e-178	615.00
IUUC-Psi-093866	Pelodiscus sinensis	70.63	6.00e-118	416.00
IUUC-Pma-094236	Petromyzon marinus	59.88	5.00e-116	410.00
IUUC-Pfo-096095	Poecilia formosa	56.21	1.00e-105	376.00
IUUC-Pab-098385	Pongo abelii	95.89	3.00e-179	620.00
IUUC-Pop-099433	Populus trichocarpa	26.85	1.00e-28	120.00
IUUC-Pca-101119	Procavia capensis	93.61	3.00e-114	404.00
IUUC-Ppe-101677	Prunus persica	28.23	3.00e-26	112.00
IUUC-Pva-102726	Pteropus vampyrus	95.89	2.00e-179	621.00
IUUC-Rno-105576	Rattus norvegicus	95.31	7.00e-177	612.00
IUUC-Sha-106774	Sarcophilus harrisii	91.16	9.00e-158	549.00
IUUC-Sit-109988	Setaria italica	27.08	3.00e-26	112.00
IUUC-Sly-110864	Solanum lycopersicum	28.97	3.00e-27	116.00
IUUC-Sar-113060	Sorex araneus	86.69	1.00e-126	445.00
IUUC-Sbi-114699	Sorghum bicolor	28.30	5.00e-27	115.00
IUUC-Ssc-116445	Sus scrofa	96.48	1.00e-180	625.00
IUUC-Tru-117834	Takifugu rubripes	58.07	1.00e-113	402.00
IUUC-Tni-119651	Tetraodon nigroviridis	57.14	9.00e-113	399.00
IUUC-Tca-121318	Theobroma cacao	26.61	6.00e-27	114.00
IUUC-Tae-124184	Triticum aestivum	29.03	3.00e-28	119.00
IUUC-Tur-126226	Triticum urartu	29.83	9.00e-26	110.00
IUUC-Tbe-128079	Tupaia belangeri	81.65	5.00e-107	380.00
IUUC-Ttr-128391	Tursiops truncatus	92.69	3.00e-169	587.00
IUUC-Vvi-131148	Vitis vinifera	26.61	5.00e-24	105.00
IUUC-Xtr-132743	Xenopus tropicalis	61.08	2.00e-114	405.00
IUUC-Xma-133722	Xiphophorus maculatus	56.52	1.00e-110	392.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence