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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105352
UUCD1 version UUC-RaN-00542
Ensembl Protein ID ENSRNOP00000016647.4
UniProt Accession F1LSC5; F1LSC5_RAT
Genbank Protein ID ENSRNOP00000016647
Protein Name E3 ubiquitin-protein ligase TRIM23
Genbank Nucleotide ID AC129167
Gene Name Trim23
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000012354.7 ENSRNOT00000016649.6 ENSRNOP00000016647.4
ENSRNOG00000012354.7 ENSRNOT00000016596.6 ENSRNOP00000016597.6
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 97.74 0.00e+00 1156.00 IUUC-Hsa-045801
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAALAVNKPG AGVDSGRQGS RGTAVVKVLE CGVCEDVFSL QGDKVPRLLL CGHTVCHDCL 60
TRLPLHGRAI RCPFDRQVTD LGDSGVWGLK KNFALLELLE RLQNGHIGQY GAAEEALGIS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105352|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCGGCACGCG CCGAGGCTTC TGGGTAGGTC GCTCAACCCC TCCTCTCAGT TAAAGGCTCT 60
ACTGCAGCTG TGCCGCTGCT CCTTCCAGGA TGGCTGCCCT CGCTGTAAAC AAGCCCGGAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105352|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0342--GTP-binding
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR003649--Bbox_C
IPR027417--P-loop_NTPase
IPR005225--Small_GTP-bd_dom
IPR024156--Small_GTPase_ARF
IPR006689--Small_GTPase_ARF/SAR
IPR000315--Znf_B-box
IPR013087--Znf_C2H2_type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS51417--ARF
PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2
PS50157--ZINC_FINGER_C2H2_2
Pfam

PF00025--Arf
PF00643--zf-B_box
PF14634--zf-RING_5
PRINTS

PR00328--SAR1GTPBP
SMART

SM00502--BBC
SM00336--BBOX
SM00184--RING
Gene Ontology

GO:0005622--C:intracellular
GO:0005525--F:GTP binding
GO:0008270--F:zinc ion binding
GO:0007264--P:small GTPase mediated signal transduction
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001685 Ailuropoda melanoleuca 98.44 0.00e+00 1132.00
IUUC-Apl-003280 Anas platyrhynchos 94.95 0.00e+00 1090.00
IUUC-Aca-004587 Anolis carolinensis 92.04 0.00e+00 1006.00
IUUC-Ame-010760 Astyanax mexicanus 88.89 0.00e+00 1055.00
IUUC-Bta-013139 Bos taurus 96.03 0.00e+00 1106.00
IUUC-Cel-018197 Caenorhabditis elegans 36.53 4.00e-96 345.00
IUUC-Cja-019407 Callithrix jacchus 97.56 0.00e+00 1122.00
IUUC-Cfa-020758 Canis familiaris 97.89 0.00e+00 1116.00
IUUC-Cpo-022050 Cavia porcellus 97.56 0.00e+00 1157.00
IUUC-Csa-023938 Chlorocebus sabaeus 97.74 0.00e+00 1123.00
IUUC-Cho-024793 Choloepus hoffmanni 76.63 0.00e+00 746.00
IUUC-Cin-025424 Ciona intestinalis 56.97 0.00e+00 635.00
IUUC-Csv-025949 Ciona savignyi 56.13 2.00e-180 625.00
IUUC-Dre-028835 Danio rerio 88.70 0.00e+00 1050.00
IUUC-Dno-029080 Dasypus novemcinctus 89.18 0.00e+00 1027.00
IUUC-Dor-031092 Dipodomys ordii 90.94 0.00e+00 1061.00
IUUC-Ete-033169 Echinops telfairi 84.15 0.00e+00 945.00
IUUC-Eca-033509 Equus caballus 98.78 0.00e+00 1137.00
IUUC-Eeu-034669 Erinaceus europaeus 99.12 4.00e-132 464.00
IUUC-Fca-035813 Felis catus 98.61 0.00e+00 1139.00
IUUC-Fal-037222 Ficedula albicollis 92.78 0.00e+00 1098.00
IUUC-Gmo-038996 Gadus morhua 88.26 0.00e+00 1048.00
IUUC-Gga-040181 Gallus gallus 93.94 0.00e+00 1113.00
IUUC-Gac-041763 Gasterosteus aculeatus 87.56 0.00e+00 1039.00
IUUC-Ggo-044808 Gorilla gorilla 91.84 0.00e+00 1058.00
IUUC-Hsa-045801 Homo sapiens 97.74 0.00e+00 1123.00
IUUC-Itr-048568 Ictidomys tridecemlineatus 98.43 0.00e+00 1132.00
IUUC-Lch-049531 Latimeria chalumnae 92.04 0.00e+00 1062.00
IUUC-Loc-052929 Lepisosteus oculatus 89.46 0.00e+00 1062.00
IUUC-Laf-053593 Loxodonta africana 98.43 0.00e+00 1134.00
IUUC-Mcc-055065 Macaca mulatta 97.74 0.00e+00 1123.00
IUUC-Meu-056372 Macropus eugenii 98.67 7.00e-131 460.00
IUUC-Mga-059665 Meleagris gallopavo 95.16 0.00e+00 959.00
IUUC-Mmr-061643 Microcebus murinus 98.43 0.00e+00 1131.00
IUUC-Mdo-062624 Monodelphis domestica 94.02 0.00e+00 1111.00
IUUC-Mmu-064210 Mus musculus 99.30 0.00e+00 1174.00
IUUC-Mpu-066292 Mustela putorius furo 98.73 0.00e+00 1093.00
IUUC-Mlu-066952 Myotis lucifugus 98.26 0.00e+00 1130.00
IUUC-Nle-069002 Nomascus leucogenys 97.74 0.00e+00 1123.00
IUUC-Opr-070405 Ochotona princeps 88.85 0.00e+00 1034.00
IUUC-Ont-071487 Oreochromis niloticus 88.89 0.00e+00 1049.00
IUUC-Oan-073274 Ornithorhynchus anatinus 95.95 0.00e+00 982.00
IUUC-Ocu-074788 Oryctolagus cuniculus 98.26 0.00e+00 1129.00
IUUC-Ola-086339 Oryzias latipes 87.48 0.00e+00 1041.00
IUUC-Oga-089037 Otolemur garnettii 98.26 0.00e+00 1131.00
IUUC-Oar-089458 Ovis aries 98.21 0.00e+00 1107.00
IUUC-Pan-092120 Papio anubis 97.06 0.00e+00 1110.00
IUUC-Psi-093157 Pelodiscus sinensis 92.75 0.00e+00 1104.00
IUUC-Pfo-096904 Poecilia formosa 88.13 0.00e+00 1040.00
IUUC-Pab-098358 Pongo abelii 97.74 0.00e+00 1123.00
IUUC-Pva-102674 Pteropus vampyrus 96.69 0.00e+00 1110.00
IUUC-Sha-106532 Sarcophilus harrisii 86.89 2.00e-61 227.00
IUUC-Sar-113483 Sorex araneus 95.65 6.00e-151 527.00
IUUC-Ssc-116170 Sus scrofa 98.61 0.00e+00 1138.00
IUUC-Tgu-116968 Taeniopygia guttata 93.22 0.00e+00 1092.00
IUUC-Tru-118246 Takifugu rubripes 88.29 0.00e+00 1038.00
IUUC-Tni-120692 Tetraodon nigroviridis 90.16 0.00e+00 1032.00
IUUC-Ttr-128956 Tursiops truncatus 98.43 0.00e+00 1134.00
IUUC-Vpa-130291 Vicugna pacos 91.64 0.00e+00 1068.00
IUUC-Xtr-132331 Xenopus tropicalis 91.48 0.00e+00 917.00
Created Date 25-Jun-2017

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